Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006058

Physical Location & Seq

Genomic Coordinates Reverse (-)

57247844 .. 57248713

Gene Structure 870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20884

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGAATTTAAAGCCCTTCCATCTTCTGCTGCTCCACTTGCTGCTACAGCCACGCAGTCACGTCGTTGCGCAGGAAACCACTGAATCACAGCAGAACCTCAACTCCACAGTGGCAATTGTGATTGTGCTGCTAGTGTGCGCCTTGTGTACCTCGGTTGGCTTGTTCTCCATCTACAACCACCGTTGTGTGGAGGCGCACATAGATATAGCCGGCGAAGGTATCGATTCCTCCCTCCGTCCACAGCAACATCATCGAGGTCTGGAGGCGGCTGTCATCGAAAAGTTCCCTATCTTGCACTACGCAACCGTCAAGCACCTCAAGATCGGCAAGGGAGCATTGGAATGTGCAGTGTGCTTAAGCCAGTTCGAGGACTACGAAACCCTGCGTTTGCTGCCGAAATGCTACCACGTCTTCCACCCCCAATGCATCGACCCTTGGTTGGCTTCTCACCTCACGTGCCCTGTTTGCCGCGCCAACCTCGCGCCCGAGTCCAACAAGGCAGCACCAGAAAATGGTGCCTTTGTAATTGCGGATTTGGATGAGATAGTGATCGAGTCGCAGTCGGCGGGTCAGTCACCTACTCCGCTTGGACAGAACACGGAGAGCTATAGGTTGAGACTGCCGGAAGAGCTGGGGAGGCAGCTGCGTTCAAGTAGCTACGTCGAGGTAGTCTTTCCGAGGCTTGGGAGTTGCAGGAAGGGATACAGGTACGGTAGTGAAGGGAGTAGTAGCCAAGATGAGGATGGTCATCAATTGGGCCAGTGGGATTTAACCACCATGTTACCGCCGGTTATAGCTAGTAGTGGTGGTGCAGGTGAGATGAAGACGCTGTTAGCGCCTGATGAATCCATATGTCGGCTTCCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0042742 GO:0043161 GO:0043170 GO:0043207 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0045087 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

289

Amino Acids

31.77

Weight (kDa)

5.89

Isoelectric Point (pI)

58.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	114 - 157	9.9e-13	Ring finger domain
zf-RING_11	PF17123	114 - 143	7.5e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	114 - 156	2.2e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	115 - 156	1e-05	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	127 - 157	1.8e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09110 AT4G09120 AT4G09130
fragaria_vesca	FvH4_1g20110
malus_domestica	MD15G1316800.v1.1
prunus_persica	Prupe.6G195100_v2.0.a1
pyrus_communis	pycom01g06440 pycom15g27950
rosa_chinensis	RchiOBHm_Chr2g0112141 RchiOBHm_Chr7g0233001
rosa_laevigata	RLG00000001306 RLG00000017954
rosa_multiflora	Rmu_sc0000360.1_g000026 Rmu_sc0001294.1_g000027 Rmu_ssc0000018.1_g000029
rosa_roxburghii	Rroxscaffold_2G00131730
rosa_rugosa	Rorug02G0178700
rosa_samantha	Rh2AG230700 Rh2BG244000 Rh2CG235300 Rh2DG238600 Rh7AG432600 Rh7BG405400 Rh7CG451900 Rh7DG421400
rosa_wichuraiana	Rw2G017900 Rw7G035670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	803
Acc16I	TGCGCA	1 cut(s)	69
Acc36I	ACCTGC	1 cut(s)	803
AccB1I	GGYRCC	1 cut(s)	515
AccB7I	CCANNNNNTGG	1 cut(s)	512
AccII	CGCG	2 cut(s)	471, 482
AciI	CCGC	6 cut(s)	266, 469, 530, 566, 584, 785
AcsI	RAATTY	1 cut(s)	4
AcvI	CACGTG	1 cut(s)	456
AfaI	GTAC	2 cut(s)	148, 710
AfiI	CCNNNNNNNGG	7 cut(s)	187, 367, 439, 512, 683, 739, 855
AflII	CTTAAG	1 cut(s)	355
AgsI	TTSAA	1 cut(s)	651
AjiI	CACGTC	2 cut(s)	61, 409
AleI	CACNNNNGTG	1 cut(s)	183
AloI	GAACNNNNNNTCC	2 cut(s)	86, 118
AluBI	AGCT	5 cut(s)	606, 631, 643, 657, 797
AluI	AGCT	5 cut(s)	606, 631, 643, 657, 797
Alw26I	GTCTC	1 cut(s)	610
Ama87I	CYCGRG	1 cut(s)	485
AoxI	GGCC	1 cut(s)	757
ApeKI	GCWGC	7 cut(s)	28, 40, 127, 391, 500, 640, 643
ApoI	RAATTY	1 cut(s)	4
AspLEI	GCGC	6 cut(s)	70, 140, 196, 473, 484, 838
AspS9I	GGNCC	1 cut(s)	757
AsuHPI	GGTGA	3 cut(s)	440, 567, 827
AvaI	CYCGRG	1 cut(s)	485
BaeGI	GKGCMC	1 cut(s)	461
BaeI	ACNNNNGTAYC	2 cut(s)	700, 733
BanI	GGYRCC	1 cut(s)	515
BbrPI	CACGTG	1 cut(s)	456
BbsI	GAAGAC	2 cut(s)	403, 830
BbvI	GCAGC	7 cut(s)	15, 27, 114, 378, 512, 630, 652
BccI	CCATC	3 cut(s)	27, 176, 737
BcgI	CGANNNNNNTGC	4 cut(s)	43, 77, 233, 267
BciVI	GTATCC	1 cut(s)	695
BcoDI	GTCTC	1 cut(s)	610
BfaI	CTAG	2 cut(s)	131, 798
BfmI	CTRYAG	2 cut(s)	44, 607
BfoI	RGCGCY	1 cut(s)	839
BfrI	CTTAAG	1 cut(s)	355
BfuAI	ACCTGC	1 cut(s)	803
BfuI	GTATCC	1 cut(s)	695
BisI	GCNGC	9 cut(s)	29, 41, 128, 267, 392, 469, 501, 641, 644
BlsI	GCNGC	9 cut(s)	30, 42, 129, 268, 393, 470, 502, 642, 645
BmeT110I	CYCGRG	1 cut(s)	485
BmgBI	CACGTC	2 cut(s)	61, 409
BmgT120I	GGNCC	1 cut(s)	757
BmiI	GGNNCC	1 cut(s)	517
BmsI	GCATC	1 cut(s)	435
BpiI	GAAGAC	2 cut(s)	403, 830
BpmI	CTGGAG	1 cut(s)	281
BpuEI	CTTGAG	1 cut(s)	302
Bsa29I	ATCGAT	1 cut(s)	222
BsaAI	YACGTR	1 cut(s)	456
BsaBI	GATNNNNATC	2 cut(s)	548, 747
BsaJI	CCNNGG	3 cut(s)	150, 434, 677
BsaXI	ACNNNNNCTCC	2 cut(s)	86, 116
Bsc4I	CCNNNNNNNGG	7 cut(s)	187, 367, 439, 512, 683, 739, 855
Bse118I	RCCGGY	2 cut(s)	209, 787
Bse1I	ACTGG	2 cut(s)	361, 760
Bse8I	GATNNNNATC	2 cut(s)	548, 747
BseCI	ATCGAT	1 cut(s)	222
BseDI	CCNNGG	3 cut(s)	150, 434, 677
BseGI	GGATG	2 cut(s)	544, 748
BseJI	GATNNNNATC	2 cut(s)	548, 747
BseLI	CCNNNNNNNGG	7 cut(s)	187, 367, 439, 512, 683, 739, 855
BseNI	ACTGG	2 cut(s)	361, 760
BseSI	GKGCMC	1 cut(s)	461
BseXI	GCAGC	7 cut(s)	15, 27, 114, 378, 512, 630, 652
BseYI	CCCAGC	1 cut(s)	631
BsgI	GTGCAG	2 cut(s)	366, 831
Bsh1236I	CGCG	2 cut(s)	471, 482
BshFI	GGCC	1 cut(s)	759
BshNI	GGYRCC	1 cut(s)	515
BshVI	ATCGAT	1 cut(s)	222
BsiHKCI	CYCGRG	1 cut(s)	485
BsiSI	CCGG	3 cut(s)	210, 623, 788
BslI	CCNNNNNNNGG	7 cut(s)	187, 367, 439, 512, 683, 739, 855
BsmAI	GTCTC	1 cut(s)	610
BsnI	GGCC	1 cut(s)	759
BsoBI	CYCGRG	1 cut(s)	485
Bsp1286I	GDGCHC	1 cut(s)	461
Bsp143I	GATC	2 cut(s)	321, 549
BspACI	CCGC	6 cut(s)	266, 469, 530, 566, 584, 785
BspANI	GGCC	1 cut(s)	759
BspDI	ATCGAT	1 cut(s)	222
BspFNI	CGCG	2 cut(s)	471, 482
BspLI	GGNNCC	1 cut(s)	517
BspMI	ACCTGC	1 cut(s)	803
BspQI	GCTCTTC	1 cut(s)	621
BspT107I	GGYRCC	1 cut(s)	515
BspTI	CTTAAG	1 cut(s)	355
BsrFI	RCCGGY	2 cut(s)	209, 787
BsrI	ACTGG	2 cut(s)	361, 760
BssAI	RCCGGY	2 cut(s)	209, 787
BssECI	CCNNGG	3 cut(s)	150, 434, 677
BssMI	GATC	2 cut(s)	321, 549
BssT1I	CCWWGG	1 cut(s)	434
Bst4CI	ACNGT	4 cut(s)	109, 182, 307, 713
Bst6I	CTCTTC	1 cut(s)	621
BstAFI	CTTAAG	1 cut(s)	355
BstBAI	YACGTR	1 cut(s)	456
BstC8I	GCNNGC	1 cut(s)	211
BstF5I	GGATG	2 cut(s)	544, 748
BstFNI	CGCG	2 cut(s)	471, 482
BstH2I	RGCGCY	1 cut(s)	839
BstHHI	GCGC	6 cut(s)	70, 140, 196, 473, 484, 838
BstKTI	GATC	2 cut(s)	324, 552
BstMAI	GTCTC	1 cut(s)	610
BstMBI	GATC	2 cut(s)	321, 549
BstMWI	GCNNNNNNNGC	8 cut(s)	37, 46, 391, 465, 479, 628, 637, 835
BstSFI	CTRYAG	2 cut(s)	44, 607
BstSLI	GKGCMC	1 cut(s)	461
BstUI	CGCG	2 cut(s)	471, 482
BstV1I	GCAGC	7 cut(s)	15, 27, 114, 378, 512, 630, 652
BstV2I	GAAGAC	2 cut(s)	403, 830
Bsu15I	ATCGAT	1 cut(s)	222
BsuI	GTATCC	1 cut(s)	695
BsuRI	GGCC	1 cut(s)	759
BsuTUI	ATCGAT	1 cut(s)	222
BtrI	CACGTC	2 cut(s)	61, 409
BtsCI	GGATG	2 cut(s)	544, 748
BtsI	GCAGTG	1 cut(s)	354
BtsIMutI	CAGTG	4 cut(s)	78, 114, 354, 767
BveI	ACCTGC	1 cut(s)	803
Cac8I	GCNNGC	1 cut(s)	211
CfoI	GCGC	6 cut(s)	70, 140, 196, 473, 484, 838
Cfr10I	RCCGGY	2 cut(s)	209, 787
Cfr13I	GGNCC	1 cut(s)	757
ClaI	ATCGAT	1 cut(s)	222
CseI	GACGC	1 cut(s)	835
Csp6I	GTAC	2 cut(s)	147, 709
CviAII	CATG	1 cut(s)	778
CviQI	GTAC	2 cut(s)	147, 709
DpnI	GATC	2 cut(s)	323, 551
DpnII	GATC	2 cut(s)	321, 549
DraI	TTTAAA	1 cut(s)	9
Eam1104I	CTCTTC	1 cut(s)	621
EarI	CTCTTC	1 cut(s)	621
Eco130I	CCWWGG	1 cut(s)	434
Eco72I	CACGTG	1 cut(s)	456
Eco88I	CYCGRG	1 cut(s)	485
EcoT14I	CCWWGG	1 cut(s)	434
EcoT22I	ATGCAT	1 cut(s)	428
ErhI	CCWWGG	1 cut(s)	434
FaeI	CATG	1 cut(s)	781
FaiI	YATR	7 cut(s)	200, 206, 609, 779, 794, 851, 853
FatI	CATG	1 cut(s)	777
FauI	CCCGC	1 cut(s)	559
FauNDI	CATATG	1 cut(s)	851
Fnu4HI	GCNGC	9 cut(s)	29, 41, 128, 267, 392, 469, 501, 641, 644
FokI	GGATG	2 cut(s)	551, 755
Fsp4HI	GCNGC	9 cut(s)	29, 41, 128, 267, 392, 469, 501, 641, 644
FspBI	CTAG	2 cut(s)	131, 798
FspI	TGCGCA	1 cut(s)	69
GlaI	GCGC	6 cut(s)	69, 139, 195, 472, 483, 837
GluI	GCNGC	9 cut(s)	29, 41, 128, 267, 392, 469, 501, 641, 644
GsaI	CCCAGC	1 cut(s)	635
GsuI	CTGGAG	1 cut(s)	281
HaeII	RGCGCY	1 cut(s)	839
HaeIII	GGCC	1 cut(s)	759
HapII	CCGG	3 cut(s)	210, 623, 788
HgaI	GACGC	1 cut(s)	835
HhaI	GCGC	6 cut(s)	70, 140, 196, 473, 484, 838
Hin1II	CATG	1 cut(s)	781
Hin6I	GCGC	6 cut(s)	68, 138, 194, 471, 482, 836
HinP1I	GCGC	6 cut(s)	68, 138, 194, 471, 482, 836
HinfI	GANTC	5 cut(s)	83, 224, 488, 554, 845
HpaII	CCGG	3 cut(s)	210, 623, 788
HphI	GGTGA	3 cut(s)	440, 567, 827
Hpy166II	GTNNAC	2 cut(s)	147, 239
Hpy188I	TCNGA	1 cut(s)	678
Hpy188III	TCNNGA	2 cut(s)	260, 319
Hpy8I	GTNNAC	2 cut(s)	147, 239
Hpy99I	CGWCG	2 cut(s)	65, 665
HpyAV	CCTTC	4 cut(s)	25, 209, 691, 713
HpyCH4III	ACNGT	4 cut(s)	109, 182, 307, 713
HpyCH4IV	ACGT	4 cut(s)	60, 408, 455, 660
HpyCH4V	TGCA	5 cut(s)	295, 347, 426, 693, 812
HpyF10VI	GCNNNNNNNGC	8 cut(s)	37, 46, 391, 465, 479, 628, 637, 835
HpySE526I	ACGT	4 cut(s)	60, 408, 455, 660
Hsp92II	CATG	1 cut(s)	781
HspAI	GCGC	6 cut(s)	68, 138, 194, 471, 482, 836
KroI	GCCGGC	1 cut(s)	209
KroNI	GCCGGC	1 cut(s)	211
Kzo9I	GATC	2 cut(s)	321, 549
LguI	GCTCTTC	1 cut(s)	621
LmnI	GCTCC	2 cut(s)	36, 332
Lsp1109I	GCAGC	7 cut(s)	15, 27, 114, 378, 512, 630, 652
LweI	GCATC	1 cut(s)	435
MaeI	CTAG	2 cut(s)	131, 798
MaeII	ACGT	4 cut(s)	60, 408, 455, 660
MaeIII	GTNAC	3 cut(s)	56, 573, 780
MalI	GATC	2 cut(s)	323, 551
MboI	GATC	2 cut(s)	321, 549
MboII	GAAGA	4 cut(s)	14, 403, 638, 835
MfeI	CAATTG	2 cut(s)	114, 752
MhlI	GDGCHC	1 cut(s)	461
MluCI	AATT	4 cut(s)	4, 114, 525, 752
MlyI	GAGTC	2 cut(s)	497, 563
MmeI	TCCRAC	1 cut(s)	516
Mph1103I	ATGCAT	1 cut(s)	428
MroNI	GCCGGC	1 cut(s)	209
MseI	TTAA	3 cut(s)	8, 356, 770
MslI	CAYNNNNRTG	2 cut(s)	183, 340
MspA1I	CMGCKG	1 cut(s)	643
MspCI	CTTAAG	1 cut(s)	355
MspI	CCGG	3 cut(s)	210, 623, 788
MunI	CAATTG	2 cut(s)	114, 752
MvnI	CGCG	2 cut(s)	471, 482
MwoI	GCNNNNNNNGC	8 cut(s)	37, 46, 391, 465, 479, 628, 637, 835
NaeI	GCCGGC	1 cut(s)	211
NdeI	CATATG	1 cut(s)	851
NdeII	GATC	2 cut(s)	321, 549
NgoMIV	GCCGGC	1 cut(s)	209
NlaIII	CATG	1 cut(s)	781
NlaIV	GGNNCC	1 cut(s)	517
NmuCI	GTSAC	2 cut(s)	56, 573
NsbI	TGCGCA	1 cut(s)	69
NsiI	ATGCAT	1 cut(s)	428
OliI	CACNNNNGTG	1 cut(s)	183
PaqCI	CACCTGC	1 cut(s)	803
PciSI	GCTCTTC	1 cut(s)	621
PcsI	WCGNNNNNNNCGW	1 cut(s)	372
PdiI	GCCGGC	1 cut(s)	211
PfeI	GAWTC	3 cut(s)	83, 224, 845
PflMI	CCANNNNNTGG	1 cut(s)	512
PkrI	GCNGC	9 cut(s)	30, 42, 129, 268, 393, 470, 502, 642, 645
PleI	GAGTC	2 cut(s)	496, 562
PmaCI	CACGTG	1 cut(s)	456
PmlI	CACGTG	1 cut(s)	456
PpsI	GAGTC	2 cut(s)	496, 562
Ppu21I	YACGTR	1 cut(s)	456
PspCI	CACGTG	1 cut(s)	456
PspFI	CCCAGC	1 cut(s)	631
PspN4I	GGNNCC	1 cut(s)	517
PspPI	GGNCC	1 cut(s)	757
PvuII	CAGCTG	1 cut(s)	643
RsaI	GTAC	2 cut(s)	148, 710
RsaNI	GTAC	2 cut(s)	147, 709
RseI	CAYNNNNRTG	2 cut(s)	183, 340
SapI	GCTCTTC	1 cut(s)	621
SaqAI	TTAA	3 cut(s)	8, 356, 770
SatI	GCNGC	9 cut(s)	29, 41, 128, 267, 392, 469, 501, 641, 644
Sau3AI	GATC	2 cut(s)	321, 549
Sau96I	GGNCC	1 cut(s)	757
SchI	GAGTC	2 cut(s)	497, 563
SduI	GDGCHC	1 cut(s)	461
SfaNI	GCATC	1 cut(s)	435
SfcI	CTRYAG	2 cut(s)	44, 607
SmiMI	CAYNNNNRTG	2 cut(s)	183, 340
SmlI	CTYRAG	2 cut(s)	317, 355
SmoI	CTYRAG	2 cut(s)	317, 355
Sse9I	AATT	4 cut(s)	4, 114, 525, 752
SsiI	CCGC	6 cut(s)	266, 469, 530, 566, 584, 785
SspMI	CTAG	2 cut(s)	131, 798
StyI	CCWWGG	1 cut(s)	434
TaaI	ACNGT	4 cut(s)	109, 182, 307, 713
TaiI	ACGT	4 cut(s)	63, 411, 458, 663
TaqI	TCGA	7 cut(s)	222, 253, 276, 366, 429, 552, 663
TasI	AATT	4 cut(s)	4, 114, 525, 752
TauI	GCSGC	2 cut(s)	269, 471
TfiI	GAWTC	3 cut(s)	83, 224, 845
Tru1I	TTAA	3 cut(s)	8, 356, 770
Tru9I	TTAA	3 cut(s)	8, 356, 770
TscAI	CASTG	4 cut(s)	85, 114, 354, 767
TseFI	GTSAC	2 cut(s)	56, 573
TseI	GCWGC	7 cut(s)	28, 40, 127, 391, 500, 640, 643
Tsp45I	GTSAC	2 cut(s)	56, 573
TspDTI	ATGAA	3 cut(s)	17, 836, 858
TspGWI	ACGGA	2 cut(s)	224, 614
TspRI	CASTG	4 cut(s)	85, 114, 354, 767
Van91I	CCANNNNNTGG	1 cut(s)	512
Vha464I	CTTAAG	1 cut(s)	355
XapI	RAATTY	1 cut(s)	4
XcmI	CCANNNNNNNNNTGG	1 cut(s)	740
XspI	CTAG	2 cut(s)	131, 798
Zsp2I	ATGCAT	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.