Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006058

Physical Location & Seq

Genomic Coordinates Forward (+)

5815775 .. 5816922

Gene Structure 1148 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G09130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGACTATCTTCACAAGAGATTTCAGCCATCGGATCCTAGCATGTGTTTTATTGCCACTCTTCCTTTTCCAATGTTTGCCTTACGTAACTTGCCAGCAAGGGTCGGAATCAGCAGGTCGCAATGGAAAAAGTAAAGAGTCATCGATAATTGGGATCGTTTTGCTTTCGTTGTTCCTCTTACTTTTGGTCGTTTATTGCTTAAACTATGGATGTTGTATTGAAGAGAATGAGACAGGAGGTCATGAAGTGTTACACAGTAGAGTGAGGCGTGGGATTGACAAGGACGTCATCGAGTCCTTTCCGGCTTTCCTATATTCAGAGGTTAAAGCGTTCAAGATAGGCAACGGCGGAGTTGAATGTGCAATTTGTCTATGCGAGTTTGAAGACGAAGAGCCGCTACGTTGGATGCCTCCTTGTAGCCATACTTTCCATGCTAATTGCATTGACGAATGGCTCTCTTCTCGGTCCACATGTCCCGTCTGCCGTGCAAATTTGTCTCTGAAGTCCGGTGACAGCTTTCCACATCCGAGTATGGATGTTGAAACGGGAAATGCACAGAGAGGTGTTCAAGAATCCCCCGATGAGAGAAGCTTGACAGGTAGTAGTGTTACATGTAATAATAATGCAAATTATACAACACCTCGATCAAGATCTACAGGGTTATTGTCGAGCTGGCATGTGCCTGAGCTATTCCTCCCTCGATCTCATTCGACTGGACATTCATTGGTTCAACCATGTCAGAATATAGACCGATTCACACTGCAATTACCGGAGGAGGTGCAAAGACAATTGGTAAGCCTGAACCTGATAAAGAGAAGCCATATAGCCTTACCTCGAGCCAGGAGTTCTAGACAGGGCTACAGGAGCGGAAGCGTTGGGAACGAGAGAACCGGTTTCTCTCAAGGACGGCAAACACTCAGGCGAGCCATATCTACGTCGCTATCTTTCTCTTTTCAACCTGCTCCTGTTCGGTCCACACTTGACAGGGACAATCTAATGCGAGAGACTTCCCAAGCTAATGACAAAGATTTTGGTGAACGGTCATTCCAACGCCTCATGCCAGAGAAAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007584 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009814 GO:0009816 GO:0009987 GO:0009991 GO:0010033 GO:0010200 GO:0010243 GO:0010498 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031667 GO:0031668 GO:0031669 GO:0032446 GO:0033273 GO:0033591 GO:0033993 GO:0034284 GO:0036211 GO:0042221 GO:0042493 GO:0042742 GO:0043161 GO:0043170 GO:0043207 GO:0043412 GO:0043562 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0045087 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061630 GO:0061659 GO:0070647 GO:0071496 GO:0071704 GO:0071944 GO:0097305 GO:0098542 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

357

Amino Acids

40.0

Weight (kDa)

7.91

Isoelectric Point (pI)

61.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	119 - 162	2.4e-14	Ring finger domain
zf-RING_11	PF17123	119 - 148	1.6e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	119 - 161	2.3e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_5	PF14634	119 - 162	5.2e-07	zinc-RING finger domain
zf-RING_UBOX	PF13445	120 - 159	6.6e-07	RING-type zinc-finger
zf-C3HC4	PF00097	120 - 161	1.2e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	125 - 162	7.6e-08	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09110 AT4G09120 AT4G09130
fragaria_vesca	FvH4_1g20110
malus_domestica	MD15G1316800.v1.1
prunus_persica	Prupe.6G195100_v2.0.a1
pyrus_communis	pycom01g06440 pycom15g27950
rosa_chinensis	RchiOBHm_Chr2g0112141 RchiOBHm_Chr7g0233001
rosa_laevigata	RLG00000001306 RLG00000017954
rosa_multiflora	Rmu_sc0000360.1_g000026 Rmu_sc0001294.1_g000027 Rmu_ssc0000018.1_g000029
rosa_roxburghii	Rroxscaffold_2G00131730
rosa_rugosa	Rorug02G0178700
rosa_samantha	Rh2AG230700 Rh2BG244000 Rh2CG235300 Rh2DG238600 Rh7AG432600 Rh7BG405400 Rh7CG451900 Rh7DG421400
rosa_wichuraiana	Rw2G017900 Rw7G035670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	284
AatII	GACGTC	1 cut(s)	288
Acc36I	ACCTGC	2 cut(s)	104, 967
AccBSI	CCGCTC	1 cut(s)	867
AciI	CCGC	3 cut(s)	348, 395, 867
AclWI	GGATC	3 cut(s)	28, 41, 161
AcsI	RAATTY	1 cut(s)	490
AcuI	CTGAAG	1 cut(s)	521
AcyI	GRCGYC	1 cut(s)	285
AflIII	ACRYGT	2 cut(s)	470, 611
AgeI	ACCGGT	1 cut(s)	890
AgsI	TTSAA	8 cut(s)	221, 334, 356, 383, 542, 569, 731, 956
AhdI	GACNNNNNGTC	1 cut(s)	237
AjnI	CCWGG	1 cut(s)	839
AloI	GAACNNNNNNTCC	2 cut(s)	1029, 1061
AluBI	AGCT	5 cut(s)	516, 591, 672, 688, 1016
AluI	AGCT	5 cut(s)	516, 591, 672, 688, 1016
Alw26I	GTCTC	3 cut(s)	224, 501, 998
AlwI	GGATC	3 cut(s)	28, 41, 161
Ama87I	CYCGRG	1 cut(s)	834
ApoI	RAATTY	1 cut(s)	490
ArsI	GACNNNNNNTTYG	2 cut(s)	1013, 1045
AsiGI	ACCGGT	1 cut(s)	890
AspS9I	GGNCC	2 cut(s)	465, 972
AsuHPI	GGTGA	2 cut(s)	521, 1046
AvaI	CYCGRG	1 cut(s)	834
AvaII	GGWCC	2 cut(s)	465, 972
BamHI	GGATCC	1 cut(s)	33
BarI	GAAGNNNNNNTAC	2 cut(s)	381, 413
BbsI	GAAGAC	1 cut(s)	390
BccI	CCATC	1 cut(s)	36
BceAI	ACGGC	3 cut(s)	361, 468, 923
BciT130I	CCWGG	1 cut(s)	841
BcoDI	GTCTC	3 cut(s)	224, 501, 998
BfaI	CTAG	2 cut(s)	38, 849
BfmI	CTRYAG	2 cut(s)	654, 859
BfuAI	ACCTGC	2 cut(s)	104, 967
BglII	AGATCT	1 cut(s)	650
BisI	GCNGC	1 cut(s)	395
BlsI	GCNGC	1 cut(s)	396
Bme1390I	CCNGG	1 cut(s)	841
Bme18I	GGWCC	2 cut(s)	465, 972
BmeRI	GACNNNNNGTC	1 cut(s)	237
BmeT110I	CYCGRG	1 cut(s)	834
BmgT120I	GGNCC	2 cut(s)	465, 972
BmiI	GGNNCC	1 cut(s)	35
BmrFI	CCNGG	1 cut(s)	841
BmsI	GCATC	1 cut(s)	396
BpiI	GAAGAC	1 cut(s)	390
Bpu10I	CCTNAGC	1 cut(s)	684
BpuEI	CTTGAG	1 cut(s)	885
Bsa29I	ATCGAT	1 cut(s)	143
BsaAI	YACGTR	1 cut(s)	85
BsaBI	GATNNNNATC	1 cut(s)	649
BsaHI	GRCGYC	1 cut(s)	285
BsaWI	WCCGGW	3 cut(s)	506, 769, 890
Bse118I	RCCGGY	1 cut(s)	890
Bse1I	ACTGG	1 cut(s)	718
Bse3DI	GCAATG	1 cut(s)	127
Bse8I	GATNNNNATC	1 cut(s)	649
BseBI	CCWGG	1 cut(s)	841
BseCI	ATCGAT	1 cut(s)	143
BseGI	GGATG	4 cut(s)	215, 411, 523, 541
BseJI	GATNNNNATC	1 cut(s)	649
BseMI	GCAATG	1 cut(s)	127
BseMII	CTCAG	2 cut(s)	675, 931
BseNI	ACTGG	1 cut(s)	718
BseRI	GAGGAG	1 cut(s)	788
BshTI	ACCGGT	1 cut(s)	890
BshVI	ATCGAT	1 cut(s)	143
BsiHKCI	CYCGRG	1 cut(s)	834
BsiSI	CCGG	4 cut(s)	302, 507, 770, 891
BslFI	GGGAC	2 cut(s)	459, 1001
BsmAI	GTCTC	3 cut(s)	224, 501, 998
BsmFI	GGGAC	2 cut(s)	459, 1001
BsoBI	CYCGRG	1 cut(s)	834
Bsp143I	GATC	5 cut(s)	33, 153, 644, 650, 701
BspACI	CCGC	3 cut(s)	348, 395, 867
BspCNI	CTCAG	2 cut(s)	676, 930
BspDI	ATCGAT	1 cut(s)	143
BspHI	TCATGA	1 cut(s)	241
BspLI	GGNNCC	1 cut(s)	35
BspMI	ACCTGC	2 cut(s)	104, 967
BspPI	GGATC	3 cut(s)	28, 41, 161
BspQI	GCTCTTC	1 cut(s)	384
BsrBI	CCGCTC	1 cut(s)	867
BsrDI	GCAATG	1 cut(s)	127
BsrFI	RCCGGY	1 cut(s)	890
BsrI	ACTGG	1 cut(s)	718
BssAI	RCCGGY	1 cut(s)	890
BssMI	GATC	5 cut(s)	33, 153, 644, 650, 701
BssNI	GRCGYC	1 cut(s)	285
Bst2UI	CCWGG	1 cut(s)	841
Bst4CI	ACNGT	2 cut(s)	257, 1041
Bst6I	CTCTTC	4 cut(s)	65, 216, 384, 463
BstACI	GRCGYC	1 cut(s)	285
BstBAI	YACGTR	1 cut(s)	85
BstC8I	GCNNGC	3 cut(s)	95, 674, 924
BstDEI	CTNAG	2 cut(s)	684, 917
BstF5I	GGATG	4 cut(s)	215, 411, 523, 541
BstKTI	GATC	5 cut(s)	36, 156, 647, 653, 704
BstMAI	GTCTC	3 cut(s)	224, 501, 998
BstMBI	GATC	5 cut(s)	33, 153, 644, 650, 701
BstMWI	GCNNNNNNNGC	1 cut(s)	864
BstNI	CCWGG	1 cut(s)	841
BstNSI	RCATGY	4 cut(s)	45, 474, 615, 680
BstSCI	CCNGG	1 cut(s)	839
BstSFI	CTRYAG	2 cut(s)	654, 859
BstSNI	TACGTA	1 cut(s)	85
BstV2I	GAAGAC	1 cut(s)	390
BstX2I	RGATCY	2 cut(s)	33, 650
BstYI	RGATCY	2 cut(s)	33, 650
Bsu15I	ATCGAT	1 cut(s)	143
BsuTUI	ATCGAT	1 cut(s)	143
BtsCI	GGATG	4 cut(s)	215, 411, 523, 541
BtsI	GCAGTG	1 cut(s)	758
BtsIMutI	CAGTG	1 cut(s)	758
BveI	ACCTGC	2 cut(s)	104, 967
Cac8I	GCNNGC	3 cut(s)	95, 674, 924
CciI	TCATGA	1 cut(s)	241
Cfr10I	RCCGGY	1 cut(s)	890
Cfr13I	GGNCC	2 cut(s)	465, 972
ClaI	ATCGAT	1 cut(s)	143
CspAI	ACCGGT	1 cut(s)	890
CviAII	CATG	8 cut(s)	42, 242, 431, 471, 612, 677, 735, 1057
DdeI	CTNAG	2 cut(s)	684, 917
DpnI	GATC	5 cut(s)	35, 155, 646, 652, 703
DpnII	GATC	5 cut(s)	33, 153, 644, 650, 701
DrdI	GACNNNNNNGTC	1 cut(s)	284
DriI	GACNNNNNGTC	1 cut(s)	237
DseDI	GACNNNNNNGTC	1 cut(s)	284
Eam1104I	CTCTTC	4 cut(s)	65, 216, 384, 463
Eam1105I	GACNNNNNGTC	1 cut(s)	237
EarI	CTCTTC	4 cut(s)	65, 216, 384, 463
EciI	GGCGGA	1 cut(s)	363
Eco105I	TACGTA	1 cut(s)	85
Eco47I	GGWCC	2 cut(s)	465, 972
Eco57I	CTGAAG	1 cut(s)	521
Eco88I	CYCGRG	1 cut(s)	834
EcoRII	CCWGG	1 cut(s)	839
FaeI	CATG	8 cut(s)	45, 245, 434, 474, 615, 680, 738, 1060
FaqI	GGGAC	2 cut(s)	459, 1001
FatI	CATG	8 cut(s)	41, 241, 430, 470, 611, 676, 734, 1056
Fnu4HI	GCNGC	1 cut(s)	395
FokI	GGATG	4 cut(s)	222, 418, 510, 548
Fsp4HI	GCNGC	1 cut(s)	395
FspBI	CTAG	2 cut(s)	38, 849
GluI	GCNGC	1 cut(s)	395
HapII	CCGG	4 cut(s)	302, 507, 770, 891
Hin1I	GRCGYC	1 cut(s)	285
Hin1II	CATG	8 cut(s)	45, 245, 434, 474, 615, 680, 738, 1060
HindIII	AAGCTT	1 cut(s)	589
HinfI	GANTC	5 cut(s)	107, 137, 293, 572, 753
HpaII	CCGG	4 cut(s)	302, 507, 770, 891
HphI	GGTGA	2 cut(s)	521, 1046
Hpy166II	GTNNAC	3 cut(s)	468, 975, 1037
Hpy188I	TCNGA	6 cut(s)	33, 106, 319, 501, 528, 741
Hpy188III	TCNNGA	5 cut(s)	242, 334, 569, 648, 849
Hpy8I	GTNNAC	3 cut(s)	468, 975, 1037
Hpy99I	CGWCG	1 cut(s)	940
HpyCH4III	ACNGT	2 cut(s)	257, 1041
HpyCH4IV	ACGT	4 cut(s)	84, 285, 400, 935
HpyCH4V	TGCA	7 cut(s)	362, 441, 488, 554, 626, 763, 781
HpyF10VI	GCNNNNNNNGC	1 cut(s)	864
HpyF3I	CTNAG	2 cut(s)	684, 917
HpySE526I	ACGT	4 cut(s)	84, 285, 400, 935
Hsp92I	GRCGYC	1 cut(s)	285
Hsp92II	CATG	8 cut(s)	45, 245, 434, 474, 615, 680, 738, 1060
Kzo9I	GATC	5 cut(s)	33, 153, 644, 650, 701
LguI	GCTCTTC	1 cut(s)	384
LmnI	GCTCC	2 cut(s)	864, 967
LweI	GCATC	1 cut(s)	396
MaeI	CTAG	2 cut(s)	38, 849
MaeII	ACGT	4 cut(s)	84, 285, 400, 935
MaeIII	GTNAC	4 cut(s)	85, 249, 509, 607
MalI	GATC	5 cut(s)	35, 155, 646, 652, 703
MbiI	CCGCTC	1 cut(s)	867
MboI	GATC	5 cut(s)	33, 153, 644, 650, 701
MboII	GAAGA	5 cut(s)	52, 233, 395, 401, 450
MfeI	CAATTG	1 cut(s)	788
MflI	RGATCY	2 cut(s)	33, 650
MluCI	AATT	7 cut(s)	147, 363, 436, 490, 628, 764, 788
MlyI	GAGTC	2 cut(s)	146, 302
MmeI	TCCRAC	3 cut(s)	84, 383, 1072
MseI	TTAA	2 cut(s)	200, 324
MspI	CCGG	4 cut(s)	302, 507, 770, 891
MspR9I	CCNGG	1 cut(s)	841
MunI	CAATTG	1 cut(s)	788
MvaI	CCWGG	1 cut(s)	841
MwoI	GCNNNNNNNGC	1 cut(s)	864
NdeII	GATC	5 cut(s)	33, 153, 644, 650, 701
NlaIII	CATG	8 cut(s)	45, 245, 434, 474, 615, 680, 738, 1060
NlaIV	GGNNCC	1 cut(s)	35
NmuCI	GTSAC	1 cut(s)	509
NspI	RCATGY	4 cut(s)	45, 474, 615, 680
PaeR7I	CTCGAG	1 cut(s)	834
PagI	TCATGA	1 cut(s)	241
PciI	ACATGT	2 cut(s)	470, 611
PciSI	GCTCTTC	1 cut(s)	384
PfeI	GAWTC	3 cut(s)	107, 572, 753
PinAI	ACCGGT	1 cut(s)	890
PkrI	GCNGC	1 cut(s)	396
PleI	GAGTC	2 cut(s)	145, 301
PpsI	GAGTC	2 cut(s)	145, 301
Ppu21I	YACGTR	1 cut(s)	85
PscI	ACATGT	2 cut(s)	470, 611
Psp6I	CCWGG	1 cut(s)	839
PspGI	CCWGG	1 cut(s)	839
PspN4I	GGNNCC	1 cut(s)	35
PspPI	GGNCC	2 cut(s)	465, 972
PspXI	VCTCGAGB	1 cut(s)	834
PsuI	RGATCY	2 cut(s)	33, 650
SapI	GCTCTTC	1 cut(s)	384
SaqAI	TTAA	2 cut(s)	200, 324
SatI	GCNGC	1 cut(s)	395
Sau3AI	GATC	5 cut(s)	33, 153, 644, 650, 701
Sau96I	GGNCC	2 cut(s)	465, 972
SchI	GAGTC	2 cut(s)	146, 302
ScrFI	CCNGG	1 cut(s)	841
SfaNI	GCATC	1 cut(s)	396
SfcI	CTRYAG	2 cut(s)	654, 859
Sfr274I	CTCGAG	1 cut(s)	834
SinI	GGWCC	2 cut(s)	465, 972
SlaI	CTCGAG	1 cut(s)	834
SmlI	CTYRAG	2 cut(s)	834, 900
SmoI	CTYRAG	2 cut(s)	834, 900
SnaBI	TACGTA	1 cut(s)	85
Sse9I	AATT	7 cut(s)	147, 363, 436, 490, 628, 764, 788
SsiI	CCGC	3 cut(s)	348, 395, 867
SspMI	CTAG	2 cut(s)	38, 849
StyD4I	CCNGG	1 cut(s)	839
TaaI	ACNGT	2 cut(s)	257, 1041
TaiI	ACGT	4 cut(s)	87, 288, 403, 938
TaqI	TCGA	7 cut(s)	143, 291, 643, 668, 700, 710, 835
TaqII	GACCGA	3 cut(s)	453, 765, 960
TasI	AATT	7 cut(s)	147, 363, 436, 490, 628, 764, 788
TauI	GCSGC	1 cut(s)	397
TfiI	GAWTC	3 cut(s)	107, 572, 753
Tru1I	TTAA	2 cut(s)	200, 324
Tru9I	TTAA	2 cut(s)	200, 324
TscAI	CASTG	1 cut(s)	765
TseFI	GTSAC	1 cut(s)	509
Tsp45I	GTSAC	1 cut(s)	509
TspDTI	ATGAA	2 cut(s)	258, 711
TspRI	CASTG	1 cut(s)	765
VpaK11BI	GGWCC	2 cut(s)	465, 972
XapI	RAATTY	1 cut(s)	490
XbaI	TCTAGA	1 cut(s)	848
XceI	RCATGY	4 cut(s)	45, 474, 615, 680
XhoI	CTCGAG	1 cut(s)	834
XspI	CTAG	2 cut(s)	38, 849
ZraI	GACGTC	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.