AT4G10020

Belongs to the short-chain dehydrogenases reductases (SDR) family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
6268273 .. 6270434
2162 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G10020.1

Sequence Viewer

Length: 1170 bp
ATGGTGGATCTATTGAACTCGGTGATGAACCTGGTGGCGCCTCCAGCGACCATGGTGGTGATGGCCTTTGCATGGCCATTACTGTCTTTCATTAGCTTCTCCGAACGGGCTTACAACTCTTATTTCGCCACCGAAAATATGGAAGATAAAGTAGTTGTCATCACCGGAGCTTCATCGGCCATTGGAGAGCAAATAGCATATGAATATGCAAAAAGAGGAGCGAATTTGGTGTTGGTGGCGAGGAGAGAGCAGAGACTGAGAGTTGTGAGTAATAAGGCTAAACAGATTGGAGCCAACCATGTGATCATCATCGCTGCTGATGTCATCAAAGAAGATGACTGCCGCCGTTTTATCACCCAAGCCGTCAACTATTACGGCCGCGTGGATCATCTAGTGAATACAGCGAGTCTTGGACACACTTTTTACTTTGAGGAAGTGAGTGACACGACTGTGTTTCCACATTTGCTGGACATAAACTTCTGGGGGAATGTTTATCCGACATACGTAGCGTTGCCATACCTTCACCAGACGAATGGCCGAATAGTCGTGAATGCATCGGTTGAAAACTGGTTGCCTCTACCACGGATGAGTCTTTATTCTGCTGCAAAAGCAGCATTAGTCAACTTCTATGAGACGCTGCGTTTCGAGCTAAATGGAGACGTTGGTATAACTATCGCGACTCACGGGTGGATTGGCAGTGAGATGAGTGGAGGAAAGTTCATGCTAGAAGAAGGTGCTGAGATGCAATGGAAGGAAGAGAGAGAAGTACCTGCAAATGGTGGACCGCTAGAGGAATTTGCAAAGATGATTGTGGCAGGAGCTTGTAGGGGAGATGCATATGTGAAGTTTCCAAACTGGTACGATGTCTTTCTCCTCTATCGAGTCTTCACACCGAATGTACTGAGATGGACATTCAAGTTGTTACTGTCTACTGAGGGTACACGTAGAAGCTCCCTTGTTGGGGTCGGGTCAGGTATGCCTGTGGATGAATCCTCTTCACAAATGAAACTTATGCTTGAAGGAGGACCACCTCGAGTTCCTGCAAGCCCACCTAGGTATACCGCAAGCCCACCTCATTATACCGCAAGCCCACCACGGTATCCTGCAAGCCCACCTCGGTATCCTGCGAGCCCACCTCGGTTTTCACAGTTTAATATCCAAGAGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

389

Amino Acids

43.44

Weight (kDa)

6.41

Isoelectric Point (pI)

46.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 50 - 236 3.3e-38 short chain dehydrogenase
KR PF08659 52 - 150 7.7e-07 KR domain
adh_short_C2 PF13561 56 - 235 7.1e-22 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013147)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 778
AccB1I GGYRCC 1 cut(s) 37
AccI GTMKAC 2 cut(s) 929, 1058
AccII CGCG 2 cut(s) 381, 677
AciI CCGC 5 cut(s) 343, 379, 785, 1062, 1083
AclWI GGATC 2 cut(s) 15, 393
AcoI YGGCCR 4 cut(s) 74, 177, 376, 535
AcsI RAATTY 2 cut(s) 223, 794
AcyI GRCGYC 1 cut(s) 38
AfaI GTAC 4 cut(s) 768, 860, 900, 940
AfiI CCNNNNNNNGG 4 cut(s) 72, 776, 960, 961
AflIII ACRYGT 1 cut(s) 941
AgsI TTSAA 4 cut(s) 16, 563, 916, 1019
AjnI CCWGG 1 cut(s) 30
AjuI GAANNNNNNNTTGG 2 cut(s) 215, 247
AleI CACNNNNGTG 1 cut(s) 449
AluBI AGCT 5 cut(s) 96, 170, 649, 821, 951
AluI AGCT 5 cut(s) 96, 170, 649, 821, 951
Alw26I GTCTC 3 cut(s) 247, 626, 651
AlwI GGATC 2 cut(s) 15, 393
AlwNI CAGNNNCTG 1 cut(s) 256
Ama87I CYCGRG 1 cut(s) 1032
AoxI GGCC 5 cut(s) 63, 74, 177, 376, 535
ApeKI GCWGC 4 cut(s) 314, 602, 611, 637
ApoI RAATTY 2 cut(s) 223, 794
AspA2I CCTAGG 1 cut(s) 1052
AspLEI GCGC 1 cut(s) 40
AspS9I GGNCC 2 cut(s) 782, 1025
AsuHPI GGTGA 5 cut(s) 34, 70, 154, 346, 515
AvaI CYCGRG 1 cut(s) 1032
AvaII GGWCC 2 cut(s) 782, 1025
AvrII CCTAGG 1 cut(s) 1052
BaeI ACNNNNGTAYC 4 cut(s) 1082, 1103, 1115, 1136
BalI TGGCCA 1 cut(s) 76
BanI GGYRCC 1 cut(s) 37
BanII GRGCYC 1 cut(s) 1133
BbsI GAAGAC 1 cut(s) 877
BbvI GCAGC 4 cut(s) 301, 589, 623, 624
BccI CCATC 2 cut(s) 55, 900
BceAI ACGGC 3 cut(s) 330, 347, 391
BciT130I CCWGG 1 cut(s) 32
BciVI GTATCC 2 cut(s) 1110, 1131
BclI TGATCA 1 cut(s) 303
BcoDI GTCTC 3 cut(s) 247, 626, 651
BfaI CTAG 4 cut(s) 392, 725, 788, 1053
BfoI RGCGCY 1 cut(s) 41
BfuAI ACCTGC 1 cut(s) 778
BfuI GTATCC 2 cut(s) 1110, 1131
BisI GCNGC 6 cut(s) 315, 343, 379, 603, 612, 638
BlnI CCTAGG 1 cut(s) 1052
BlsI GCNGC 6 cut(s) 316, 344, 380, 604, 613, 639
Bme1390I CCNGG 1 cut(s) 32
Bme18I GGWCC 2 cut(s) 782, 1025
BmeT110I CYCGRG 1 cut(s) 1032
BmgT120I GGNCC 2 cut(s) 782, 1025
BmiI GGNNCC 2 cut(s) 39, 292
BmrFI CCNGG 1 cut(s) 32
BmsI GCATC 3 cut(s) 563, 732, 823
BpiI GAAGAC 1 cut(s) 877
BplI GAGNNNNNCTC 2 cut(s) 1120, 1152
BpmI CTGGAG 1 cut(s) 27
BsaAI YACGTR 2 cut(s) 505, 944
BsaBI GATNNNNATC 1 cut(s) 308
BsaHI GRCGYC 1 cut(s) 38
BsaJI CCNNGG 6 cut(s) 51, 581, 1052, 1094, 1115, 1136
BsaWI WCCGGW 1 cut(s) 164
Bsc4I CCNNNNNNNGG 4 cut(s) 72, 776, 960, 961
Bse1I ACTGG 2 cut(s) 572, 860
Bse3DI GCAATG 1 cut(s) 752
Bse8I GATNNNNATC 1 cut(s) 308
BseBI CCWGG 1 cut(s) 32
BseDI CCNNGG 6 cut(s) 51, 581, 1052, 1094, 1115, 1136
BseGI GGATG 2 cut(s) 591, 991
BseJI GATNNNNATC 1 cut(s) 308
BseLI CCNNNNNNNGG 4 cut(s) 72, 776, 960, 961
BseMI GCAATG 1 cut(s) 752
BseMII CTCAG 4 cut(s) 248, 729, 893, 924
BseNI ACTGG 2 cut(s) 572, 860
BseRI GAGGAG 3 cut(s) 231, 256, 863
BseX3I CGGCCG 1 cut(s) 376
BseXI GCAGC 4 cut(s) 301, 589, 623, 624
Bsh1236I CGCG 2 cut(s) 381, 677
Bsh1285I CGRYCG 1 cut(s) 379
BshFI GGCC 5 cut(s) 65, 76, 179, 378, 537
BshNI GGYRCC 1 cut(s) 37
BsiEI CGRYCG 1 cut(s) 379
BsiHKCI CYCGRG 1 cut(s) 1032
BsiSI CCGG 1 cut(s) 165
BslI CCNNNNNNNGG 4 cut(s) 72, 776, 960, 961
BsmAI GTCTC 3 cut(s) 247, 626, 651
BsmBI CGTCTC 2 cut(s) 626, 651
BsmI GAATGC 1 cut(s) 556
BsnI GGCC 5 cut(s) 65, 76, 179, 378, 537
BsoBI CYCGRG 1 cut(s) 1032
Bsp1286I GDGCHC 1 cut(s) 1133
Bsp143I GATC 3 cut(s) 7, 303, 385
Bsp19I CCATGG 1 cut(s) 51
Bsp68I TCGCGA 1 cut(s) 677
BspACI CCGC 5 cut(s) 343, 379, 785, 1062, 1083
BspANI GGCC 5 cut(s) 65, 76, 179, 378, 537
BspCNI CTCAG 4 cut(s) 249, 730, 894, 925
BspFNI CGCG 2 cut(s) 381, 677
BspLI GGNNCC 2 cut(s) 39, 292
BspMI ACCTGC 1 cut(s) 778
BspPI GGATC 2 cut(s) 15, 393
BspT107I GGYRCC 1 cut(s) 37
BsrDI GCAATG 1 cut(s) 752
BsrI ACTGG 2 cut(s) 572, 860
BssECI CCNNGG 6 cut(s) 51, 581, 1052, 1094, 1115, 1136
BssMI GATC 3 cut(s) 7, 303, 385
BssNAI GTATAC 1 cut(s) 1059
BssNI GRCGYC 1 cut(s) 38
BssT1I CCWWGG 2 cut(s) 51, 1052
Bst1107I GTATAC 1 cut(s) 1059
Bst2UI CCWGG 1 cut(s) 32
Bst4CI ACNGT 5 cut(s) 84, 451, 927, 1098, 1149
Bst6I CTCTTC 2 cut(s) 750, 1000
BstACI GRCGYC 1 cut(s) 38
BstBAI YACGTR 2 cut(s) 505, 944
BstC8I GCNNGC 5 cut(s) 1045, 1066, 1087, 1108, 1129
BstDEI CTNAG 4 cut(s) 257, 738, 902, 933
BstDSI CCRYGG 3 cut(s) 51, 581, 1094
BstF5I GGATG 2 cut(s) 591, 991
BstFNI CGCG 2 cut(s) 381, 677
BstH2I RGCGCY 1 cut(s) 41
BstHHI GCGC 1 cut(s) 40
BstKTI GATC 3 cut(s) 10, 306, 388
BstMAI GTCTC 3 cut(s) 247, 626, 651
BstMBI GATC 3 cut(s) 7, 303, 385
BstMCI CGRYCG 1 cut(s) 379
BstMWI GCNNNNNNNGC 5 cut(s) 44, 176, 608, 611, 646
BstNI CCWGG 1 cut(s) 32
BstSCI CCNGG 1 cut(s) 30
BstSNI TACGTA 1 cut(s) 505
BstUI CGCG 2 cut(s) 381, 677
BstV1I GCAGC 4 cut(s) 301, 589, 623, 624
BstV2I GAAGAC 1 cut(s) 877
BstX2I RGATCY 1 cut(s) 7
BstXI CCANNNNNNTGG 1 cut(s) 533
BstYI RGATCY 1 cut(s) 7
BstZ17I GTATAC 1 cut(s) 1059
BstZI CGGCCG 1 cut(s) 376
BsuI GTATCC 2 cut(s) 1110, 1131
BsuRI GGCC 5 cut(s) 65, 76, 179, 378, 537
BtgI CCRYGG 3 cut(s) 51, 581, 1094
BtgZI GCGATG 1 cut(s) 295
BtsCI GGATG 2 cut(s) 591, 991
BtsI GCAGTG 1 cut(s) 703
BtsIMutI CAGTG 1 cut(s) 703
BtuMI TCGCGA 1 cut(s) 677
BveI ACCTGC 1 cut(s) 778
Cac8I GCNNGC 5 cut(s) 1045, 1066, 1087, 1108, 1129
CaiI CAGNNNCTG 1 cut(s) 256
CfoI GCGC 1 cut(s) 40
Cfr13I GGNCC 2 cut(s) 782, 1025
CseI GACGC 1 cut(s) 643
CsiI ACCWGGT 1 cut(s) 30
Csp6I GTAC 4 cut(s) 767, 859, 899, 939
CviAII CATG 4 cut(s) 52, 72, 299, 721
CviQI GTAC 4 cut(s) 767, 859, 899, 939
DdeI CTNAG 4 cut(s) 257, 738, 902, 933
DinI GGCGCC 1 cut(s) 39
DpnI GATC 3 cut(s) 9, 305, 387
DpnII GATC 3 cut(s) 7, 303, 385
EaeI YGGCCR 4 cut(s) 74, 177, 376, 535
EagI CGGCCG 1 cut(s) 376
Eam1104I CTCTTC 2 cut(s) 750, 1000
EarI CTCTTC 2 cut(s) 750, 1000
EclXI CGGCCG 1 cut(s) 376
Eco105I TACGTA 1 cut(s) 505
Eco130I CCWWGG 2 cut(s) 51, 1052
Eco24I GRGCYC 1 cut(s) 1133
Eco47I GGWCC 2 cut(s) 782, 1025
Eco52I CGGCCG 1 cut(s) 376
Eco88I CYCGRG 1 cut(s) 1032
EcoRII CCWGG 1 cut(s) 30
EcoT14I CCWWGG 2 cut(s) 51, 1052
EcoT22I ATGCAT 2 cut(s) 556, 838
EcoT38I GRGCYC 1 cut(s) 1133
EgeI GGCGCC 1 cut(s) 39
EheI GGCGCC 1 cut(s) 39
ErhI CCWWGG 2 cut(s) 51, 1052
Esp3I CGTCTC 2 cut(s) 626, 651
FaeI CATG 4 cut(s) 55, 75, 302, 724
FatI CATG 4 cut(s) 51, 71, 298, 720
FauNDI CATATG 2 cut(s) 199, 838
FbaI TGATCA 1 cut(s) 303
FblI GTMKAC 2 cut(s) 929, 1058
Fnu4HI GCNGC 6 cut(s) 315, 343, 379, 603, 612, 638
FokI GGATG 2 cut(s) 598, 998
FriOI GRGCYC 1 cut(s) 1133
Fsp4HI GCNGC 6 cut(s) 315, 343, 379, 603, 612, 638
FspBI CTAG 4 cut(s) 392, 725, 788, 1053
GlaI GCGC 1 cut(s) 39
GluI GCNGC 6 cut(s) 315, 343, 379, 603, 612, 638
GsuI CTGGAG 1 cut(s) 27
HaeII RGCGCY 1 cut(s) 41
HaeIII GGCC 5 cut(s) 65, 76, 179, 378, 537
HapII CCGG 1 cut(s) 165
HgaI GACGC 1 cut(s) 643
HhaI GCGC 1 cut(s) 40
Hin1I GRCGYC 1 cut(s) 38
Hin1II CATG 4 cut(s) 55, 75, 302, 724
Hin6I GCGC 1 cut(s) 38
HinP1I GCGC 1 cut(s) 38
HincII GTYRAC 2 cut(s) 367, 622
HindII GTYRAC 2 cut(s) 367, 622
HinfI GANTC 5 cut(s) 406, 589, 679, 882, 989
HpaII CCGG 1 cut(s) 165
HphI GGTGA 5 cut(s) 34, 70, 154, 346, 515
Hpy166II GTNNAC 6 cut(s) 367, 622, 782, 930, 941, 1059
Hpy188I TCNGA 2 cut(s) 103, 498
Hpy188III TCNNGA 2 cut(s) 547, 676
Hpy8I GTNNAC 6 cut(s) 367, 622, 782, 930, 941, 1059
HpyAV CCTTC 4 cut(s) 530, 725, 745, 1013
HpyCH4III ACNGT 5 cut(s) 84, 451, 927, 1098, 1149
HpyCH4IV ACGT 3 cut(s) 504, 660, 943
HpyF10VI GCNNNNNNNGC 5 cut(s) 44, 176, 608, 611, 646
HpyF3I CTNAG 4 cut(s) 257, 738, 902, 933
HpySE526I ACGT 3 cut(s) 504, 660, 943
Hsp92I GRCGYC 1 cut(s) 38
Hsp92II CATG 4 cut(s) 55, 75, 302, 724
HspAI GCGC 1 cut(s) 38
KasI GGCGCC 1 cut(s) 37
Ksp22I TGATCA 1 cut(s) 303
Kzo9I GATC 3 cut(s) 7, 303, 385
LmnI GCTCC 5 cut(s) 167, 218, 290, 818, 956
Lsp1109I GCAGC 4 cut(s) 301, 589, 623, 624
LweI GCATC 3 cut(s) 563, 732, 823
MabI ACCWGGT 1 cut(s) 30
MaeI CTAG 4 cut(s) 392, 725, 788, 1053
MaeII ACGT 3 cut(s) 504, 660, 943
MaeIII GTNAC 2 cut(s) 440, 921
MalI GATC 3 cut(s) 9, 305, 387
MboI GATC 3 cut(s) 7, 303, 385
MboII GAAGA 6 cut(s) 155, 344, 740, 767, 877, 987
MflI RGATCY 1 cut(s) 7
MhlI GDGCHC 1 cut(s) 1133
MlsI TGGCCA 1 cut(s) 76
MluCI AATT 2 cut(s) 223, 794
MluNI TGGCCA 1 cut(s) 76
Mly113I GGCGCC 1 cut(s) 38
MlyI GAGTC 4 cut(s) 415, 598, 673, 891
MmeI TCCRAC 1 cut(s) 521
Mox20I TGGCCA 1 cut(s) 76
Mph1103I ATGCAT 2 cut(s) 556, 838
MscI TGGCCA 1 cut(s) 76
MseI TTAA 1 cut(s) 1152
MslI CAYNNNNRTG 2 cut(s) 56, 449
Msp20I TGGCCA 1 cut(s) 76
MspI CCGG 1 cut(s) 165
MspR9I CCNGG 1 cut(s) 32
Mva1269I GAATGC 1 cut(s) 556
MvaI CCWGG 1 cut(s) 32
MvnI CGCG 2 cut(s) 381, 677
MwoI GCNNNNNNNGC 5 cut(s) 44, 176, 608, 611, 646
NarI GGCGCC 1 cut(s) 38
NcoI CCATGG 1 cut(s) 51
NdeI CATATG 2 cut(s) 199, 838
NdeII GATC 3 cut(s) 7, 303, 385
NlaIII CATG 4 cut(s) 55, 75, 302, 724
NlaIV GGNNCC 2 cut(s) 39, 292
NmuCI GTSAC 1 cut(s) 440
NruI TCGCGA 1 cut(s) 677
NsiI ATGCAT 2 cut(s) 556, 838
OliI CACNNNNGTG 1 cut(s) 449
PaeR7I CTCGAG 1 cut(s) 1032
PctI GAATGC 1 cut(s) 556
PfeI GAWTC 1 cut(s) 989
PkrI GCNGC 6 cut(s) 316, 344, 380, 604, 613, 639
PleI GAGTC 4 cut(s) 414, 597, 673, 890
PluTI GGCGCC 1 cut(s) 41
PpsI GAGTC 4 cut(s) 414, 597, 673, 890
Ppu21I YACGTR 2 cut(s) 505, 944
Psp6I CCWGG 1 cut(s) 30
PspGI CCWGG 1 cut(s) 30
PspN4I GGNNCC 2 cut(s) 39, 292
PspPI GGNCC 2 cut(s) 782, 1025
PspXI VCTCGAGB 1 cut(s) 1032
PstNI CAGNNNCTG 1 cut(s) 256
PsuI RGATCY 1 cut(s) 7
RruI TCGCGA 1 cut(s) 677
RsaI GTAC 4 cut(s) 768, 860, 900, 940
RsaNI GTAC 4 cut(s) 767, 859, 899, 939
RseI CAYNNNNRTG 2 cut(s) 56, 449
SaqAI TTAA 1 cut(s) 1152
SatI GCNGC 6 cut(s) 315, 343, 379, 603, 612, 638
Sau3AI GATC 3 cut(s) 7, 303, 385
Sau96I GGNCC 2 cut(s) 782, 1025
SchI GAGTC 4 cut(s) 415, 598, 673, 891
ScrFI CCNGG 1 cut(s) 32
SduI GDGCHC 1 cut(s) 1133
SexAI ACCWGGT 1 cut(s) 30
SfaNI GCATC 3 cut(s) 563, 732, 823
SfoI GGCGCC 1 cut(s) 39
Sfr274I CTCGAG 1 cut(s) 1032
SinI GGWCC 2 cut(s) 782, 1025
SlaI CTCGAG 1 cut(s) 1032
SmiMI CAYNNNNRTG 2 cut(s) 56, 449
SmlI CTYRAG 1 cut(s) 1032
SmoI CTYRAG 1 cut(s) 1032
SnaBI TACGTA 1 cut(s) 505
Sse9I AATT 2 cut(s) 223, 794
SsiI CCGC 5 cut(s) 343, 379, 785, 1062, 1083
SspDI GGCGCC 1 cut(s) 37
SspMI CTAG 4 cut(s) 392, 725, 788, 1053
StyD4I CCNGG 1 cut(s) 30
StyI CCWWGG 2 cut(s) 51, 1052
TaaI ACNGT 5 cut(s) 84, 451, 927, 1098, 1149
TaiI ACGT 3 cut(s) 507, 663, 946
TaqI TCGA 3 cut(s) 645, 880, 1033
TasI AATT 2 cut(s) 223, 794
TatI WGTACW 1 cut(s) 898
TauI GCSGC 2 cut(s) 345, 381
TfiI GAWTC 1 cut(s) 989
Tru1I TTAA 1 cut(s) 1152
Tru9I TTAA 1 cut(s) 1152
TscAI CASTG 1 cut(s) 703
TseFI GTSAC 1 cut(s) 440
TseI GCWGC 4 cut(s) 314, 602, 611, 637
Tsp45I GTSAC 1 cut(s) 440
TspDTI ATGAA 7 cut(s) 41, 79, 162, 216, 709, 1002, 1019
TspGWI ACGGA 1 cut(s) 598
TspRI CASTG 1 cut(s) 703
VpaK11BI GGWCC 2 cut(s) 782, 1025
XapI RAATTY 2 cut(s) 223, 794
XcmI CCANNNNNNNNNTGG 2 cut(s) 58, 136
XhoI CTCGAG 1 cut(s) 1032
XmaJI CCTAGG 1 cut(s) 1052
XmiI GTMKAC 2 cut(s) 929, 1058
XspI CTAG 4 cut(s) 392, 725, 788, 1053
Zsp2I ATGCAT 2 cut(s) 556, 838
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.