Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0013147

Physical Location & Seq

Genomic Coordinates Reverse (-)

25167500 .. 25167781

Gene Structure 282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0266700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGAAGGCGGGATCTGTGAGCAGAGAGCCCCATGGCTTGCACACGCACCTGAATCGAAACAGAGACTTCGCCGGCAGCCGTTTCAGGATGTCGGTGATGATATCCTCCGGAATCTCCAGATTCATGTTCTGGGTTGTTATTGTTTCATCTTCTTCTCTTCCATCAAACATGTTTTGGTTTATCACTCGATTCGGGTTTTGGGTTTGGTTTAGGGTCGATACATCTCCATCTTCTTCTTCTTGCAGAGGCATCGGCTTCTGGGTCCTTGTTCTCTTCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

93

Amino Acids

10.73

Weight (kDa)

11.7

Isoelectric Point (pI)

42.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10020
fragaria_vesca	FvH4_5g33170
malus_domestica	MD08G1214700.v1.1 MD15G1397600.v1.1
prunus_persica	Prupe.1G546200_v2.0.a1 Prupe.1G546200_v2.0.a1
pyrus_communis	pycom08g18450
rosa_chinensis	RchiOBHm_Chr7g0231461
rosa_laevigata	RLG00000001417
rosa_multiflora	Rmu_sc0001377.1_g000004
rosa_roxburghii	Rroxscaffold_3G00229250
rosa_rugosa	Rorug07G0266600 Rorug07G0266700
rosa_samantha	Rh7AG421100 Rh7BG395600 Rh7CG441200 Rh7DG413600
rosa_wichuraiana	Rw7G034750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	107
AciI	CCGC	1 cut(s)	8
AclWI	GGATC	1 cut(s)	19
AflIII	ACRYGT	1 cut(s)	168
Alw26I	GTCTC	1 cut(s)	57
AlwI	GGATC	1 cut(s)	19
Aor13HI	TCCGGA	1 cut(s)	107
ApeKI	GCWGC	1 cut(s)	75
AspS9I	GGNCC	1 cut(s)	262
AsuHPI	GGTGA	1 cut(s)	106
AvaII	GGWCC	1 cut(s)	262
BanII	GRGCYC	1 cut(s)	30
BbvI	GCAGC	1 cut(s)	87
BccI	CCATC	2 cut(s)	169, 235
BceAI	ACGGC	1 cut(s)	63
BcgI	CGANNNNNNTGC	4 cut(s)	35, 69, 232, 266
BcoDI	GTCTC	1 cut(s)	57
BisI	GCNGC	1 cut(s)	76
BlsI	GCNGC	1 cut(s)	77
Bme18I	GGWCC	1 cut(s)	262
BmgT120I	GGNCC	1 cut(s)	262
BmiI	GGNNCC	1 cut(s)	263
BmsI	GCATC	1 cut(s)	258
BpmI	CTGGAG	1 cut(s)	100
BsaJI	CCNNGG	1 cut(s)	31
BsaWI	WCCGGW	1 cut(s)	107
Bse118I	RCCGGY	1 cut(s)	71
BseAI	TCCGGA	1 cut(s)	107
BseDI	CCNNGG	1 cut(s)	31
BseGI	GGATG	1 cut(s)	93
BseXI	GCAGC	1 cut(s)	87
BsiSI	CCGG	2 cut(s)	72, 108
BsmAI	GTCTC	1 cut(s)	57
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp13I	TCCGGA	1 cut(s)	107
Bsp143I	GATC	1 cut(s)	11
Bsp19I	CCATGG	1 cut(s)	31
BspACI	CCGC	1 cut(s)	8
BspEI	TCCGGA	1 cut(s)	107
BspLI	GGNNCC	1 cut(s)	263
BspPI	GGATC	1 cut(s)	19
BsrFI	RCCGGY	1 cut(s)	71
BssAI	RCCGGY	1 cut(s)	71
BssECI	CCNNGG	1 cut(s)	31
BssMI	GATC	1 cut(s)	11
BssT1I	CCWWGG	1 cut(s)	31
Bst6I	CTCTTC	2 cut(s)	162, 278
BstC8I	GCNNGC	2 cut(s)	38, 73
BstDSI	CCRYGG	1 cut(s)	31
BstF5I	GGATG	1 cut(s)	93
BstKTI	GATC	1 cut(s)	14
BstMAI	GTCTC	1 cut(s)	57
BstMBI	GATC	1 cut(s)	11
BstNSI	RCATGY	1 cut(s)	172
BstV1I	GCAGC	1 cut(s)	87
BstX2I	RGATCY	1 cut(s)	11
BstYI	RGATCY	1 cut(s)	11
BtgI	CCRYGG	1 cut(s)	31
BtsCI	GGATG	1 cut(s)	93
Cac8I	GCNNGC	2 cut(s)	38, 73
Cfr10I	RCCGGY	1 cut(s)	71
Cfr13I	GGNCC	1 cut(s)	262
CviAII	CATG	3 cut(s)	32, 124, 169
CviJI	RGCY	4 cut(s)	28, 36, 78, 255
CviKI_1	RGCY	4 cut(s)	28, 36, 78, 255
DpnI	GATC	1 cut(s)	13
DpnII	GATC	1 cut(s)	11
Eam1104I	CTCTTC	2 cut(s)	162, 278
EarI	CTCTTC	2 cut(s)	162, 278
Eco130I	CCWWGG	1 cut(s)	31
Eco24I	GRGCYC	1 cut(s)	30
Eco32I	GATATC	1 cut(s)	102
Eco47I	GGWCC	1 cut(s)	262
EcoO109I	RGGNCCY	1 cut(s)	262
EcoRV	GATATC	1 cut(s)	102
EcoT14I	CCWWGG	1 cut(s)	31
EcoT38I	GRGCYC	1 cut(s)	30
ErhI	CCWWGG	1 cut(s)	31
FaeI	CATG	3 cut(s)	35, 127, 172
FaiI	YATR	3 cut(s)	33, 125, 170
FatI	CATG	3 cut(s)	31, 123, 168
Fnu4HI	GCNGC	1 cut(s)	76
FokI	GGATG	1 cut(s)	100
FriOI	GRGCYC	1 cut(s)	30
Fsp4HI	GCNGC	1 cut(s)	76
GluI	GCNGC	1 cut(s)	76
GsuI	CTGGAG	1 cut(s)	100
HapII	CCGG	2 cut(s)	72, 108
Hin1II	CATG	3 cut(s)	35, 127, 172
HinfI	GANTC	4 cut(s)	52, 111, 120, 189
HpaII	CCGG	2 cut(s)	72, 108
HphI	GGTGA	1 cut(s)	106
Hpy188III	TCNNGA	3 cut(s)	85, 108, 117
HpyCH4V	TGCA	2 cut(s)	40, 243
Hsp92II	CATG	3 cut(s)	35, 127, 172
Kpn2I	TCCGGA	1 cut(s)	107
KroI	GCCGGC	1 cut(s)	71
KroNI	GCCGGC	1 cut(s)	73
Kzo9I	GATC	1 cut(s)	11
LpnPI	CCDG	7 cut(s)	62, 70, 85, 115, 121, 130, 244
Lsp1109I	GCAGC	1 cut(s)	87
LweI	GCATC	1 cut(s)	258
MalI	GATC	1 cut(s)	13
MboI	GATC	1 cut(s)	11
MboII	GAAGA	7 cut(s)	141, 144, 149, 222, 225, 228, 265
MflI	RGATCY	1 cut(s)	11
MhlI	GDGCHC	1 cut(s)	30
MnlI	CCTC	2 cut(s)	115, 239
MroI	TCCGGA	1 cut(s)	107
MroNI	GCCGGC	1 cut(s)	71
MspI	CCGG	2 cut(s)	72, 108
NaeI	GCCGGC	1 cut(s)	73
NcoI	CCATGG	1 cut(s)	31
NdeII	GATC	1 cut(s)	11
NgoMIV	GCCGGC	1 cut(s)	71
NlaIII	CATG	3 cut(s)	35, 127, 172
NlaIV	GGNNCC	1 cut(s)	263
NspI	RCATGY	1 cut(s)	172
PciI	ACATGT	1 cut(s)	168
PdiI	GCCGGC	1 cut(s)	73
PfeI	GAWTC	4 cut(s)	52, 111, 120, 189
PkrI	GCNGC	1 cut(s)	77
PpuMI	RGGWCCY	1 cut(s)	262
PscI	ACATGT	1 cut(s)	168
Psp5II	RGGWCCY	1 cut(s)	262
PspN4I	GGNNCC	1 cut(s)	263
PspPI	GGNCC	1 cut(s)	262
PspPPI	RGGWCCY	1 cut(s)	262
PsuI	RGATCY	1 cut(s)	11
SatI	GCNGC	1 cut(s)	76
Sau3AI	GATC	1 cut(s)	11
Sau96I	GGNCC	1 cut(s)	262
SduI	GDGCHC	1 cut(s)	30
SetI	ASST	1 cut(s)	51
SfaNI	GCATC	1 cut(s)	258
SinI	GGWCC	1 cut(s)	262
SsiI	CCGC	1 cut(s)	8
StyI	CCWWGG	1 cut(s)	31
TaqI	TCGA	4 cut(s)	55, 187, 216, 276
TfiI	GAWTC	4 cut(s)	52, 111, 120, 189
TseI	GCWGC	1 cut(s)	75
TspDTI	ATGAA	3 cut(s)	17, 112, 135
VpaK11BI	GGWCC	1 cut(s)	262
XceI	RCATGY	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.