Rh7DG413600

11-beta-hydroxysteroid dehydrogenase-like 5

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0013147
Physical Location & Seq
Forward (+)
58178476 .. 58181961
3486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG413600.1

Sequence Viewer

Length: 1296 bp
ATGAGCTTCCAAACCAACACGTGTTTCTCACAAACACTCATGCATGTAAGGATACTGCTGTTGATCTCACCATTTGCCACTACATGTCAAACTCGAATCGATCTTATCTCCAGCTTCCGTCCCAGTCTCTCATTTCGATCATCAATATCAGTTACCAGGTTAGCCAAAGGACCATATACTACTACTACCATCCATCTCTCCCAATTTCATAACCTAATGGATTTGCTTAACTCGGTTCTGAATTTCGTGGTGCCACCGGCAAGTTTGGTGATGCTGGCTTTTTCTTGGCCTGCACTGTGCTTCATCAGTGGTTGCGAGTGGCTTTACAACCAGTTCAATGGTGAAGATATGGAGGACAAAGTGGTTATAATTACTGGAGCTTCTTCTGGCATAGGGGAGCAAATTGCATATGAATATGCAAAGAGGCGGGCGAAGCTTGTATTAGTGGCAAGAAGAGAGACCAGGCTGCGAGGGATTGGTGAGAATGCAAGGTTCTTGGGTGCAAAGCATGTCTTGATAATTGCTGCAGATGTTGTCAAGGAGGAGGACTGTAGGAGATTCATTAATGAAACCATAAACATTTACGGCCGAGTGGATCATCTTGTAAACACAGTAAGCTTAGGACACACGTTCAGCTTTGAGGAAGTTACAGACACTTCTGTGTTTCCCCAGCTGTTGGACATAAATTTTTGGGGAAATGTTTATCCTACATATGTTGCTCTTCCTTACCTGCGTCAAACCCATGGAAAAGTCATTGTTAATGCTTCAGTTGAGAGCTGGTTACCTTTGCCGCGGATGAGTTTATATGCTGCGGCAAAGGCAGCTCTGGTCAACTTTTATGAGACACTGAGATTAGAAGTAAAAGACGACGTGGGGATAACAATTGCAACTCATGGATGGATTGTTAGTGAAATGTCAAGAGGCAAGTTCATGGTAGATGAGGGTGCTGAAATGCAATGGAAGGAAGAAAGAGAGGTACATGTGAGTGGTGGACCGGTGGAGGATTTTGCAAGGTTAATTGTAGCAGGGGCTTGCCGAGGAGATGCATACGTGAAGTATCCAAGCTGGTATGACATATTCCTGCTTTACAGGGTGTTTGCACCTAATATTCTGAATTGGACATTCCGCATGATTCTTCCTACACACGGTATGAGGAGAACTTCACTCATTGGCACGGGGAGGCCTATTTCATCTGAAGGTAGCTATGGAAAGCCTTTGTTGGAAGGAACTTCACCAAGGAGACTTCTTGTTAGTCCAACTTTCACTCCACTCAGTCATCAGCCCAAACTGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short

Protein Analysis

431

Amino Acids

48.59

Weight (kDa)

8.44

Isoelectric Point (pI)

39.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 120 - 307 9.7e-36 short chain dehydrogenase
adh_short_C2 PF13561 126 - 305 7e-20 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013147)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10020
fragaria_vesca FvH4_5g33170
malus_domestica MD08G1214700.v1.1 MD15G1397600.v1.1
prunus_persica Prupe.1G546200_v2.0.a1 Prupe.1G546200_v2.0.a1
pyrus_communis pycom08g18450
rosa_chinensis RchiOBHm_Chr7g0231461
rosa_laevigata RLG00000001417
rosa_multiflora Rmu_sc0001377.1_g000004
rosa_roxburghii Rroxscaffold_3G00229250
rosa_rugosa Rorug07G0266600 Rorug07G0266700
rosa_samantha Rh7AG421100 Rh7BG395600 Rh7CG441200 Rh7DG413600
rosa_wichuraiana Rw7G034750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 368
Acc36I ACCTGC 1 cut(s) 738
AccB1I GGYRCC 1 cut(s) 250
AccB7I CCANNNNNTGG 1 cut(s) 676
AccII CGCG 1 cut(s) 793
AciI CCGC 5 cut(s) 427, 791, 793, 812, 1126
AclWI GGATC 1 cut(s) 603
AcoI YGGCCR 1 cut(s) 586
AcsI RAATTY 2 cut(s) 241, 685
AcuI CTGAAG 2 cut(s) 750, 1215
AcvI CACGTG 1 cut(s) 21
AfaI GTAC 1 cut(s) 978
AfiI CCNNNNNNNGG 2 cut(s) 676, 1145
AflIII ACRYGT 5 cut(s) 18, 20, 83, 627, 979
AgeI ACCGGT 1 cut(s) 994
AgsI TTSAA 1 cut(s) 337
AjiI CACGTC 1 cut(s) 871
AjnI CCWGG 2 cut(s) 155, 461
AjuI GAANNNNNNNTTGG 2 cut(s) 8, 40
AleI CACNNNNGTG 1 cut(s) 659
Alw26I GTCTC 4 cut(s) 131, 452, 836, 1234
AlwI GGATC 1 cut(s) 603
AoxI GGCC 3 cut(s) 287, 586, 1181
ApeKI GCWGC 4 cut(s) 466, 524, 809, 821
ApoI RAATTY 2 cut(s) 241, 685
AseI ATTAAT 1 cut(s) 564
AsiGI ACCGGT 1 cut(s) 994
AspS9I GGNCC 2 cut(s) 170, 992
AsuHPI GGTGA 5 cut(s) 60, 280, 353, 491, 1224
AvaII GGWCC 2 cut(s) 170, 992
BaeI ACNNNNGTAYC 2 cut(s) 44, 77
BanI GGYRCC 1 cut(s) 250
BbrPI CACGTG 1 cut(s) 21
BbvI GCAGC 4 cut(s) 453, 511, 796, 833
BccI CCATC 3 cut(s) 197, 201, 891
BceAI ACGGC 1 cut(s) 601
BciT130I CCWGG 2 cut(s) 157, 463
BciVI GTATCC 2 cut(s) 45, 1068
BcoDI GTCTC 4 cut(s) 131, 452, 836, 1234
BfmI CTRYAG 2 cut(s) 525, 550
BfuAI ACCTGC 1 cut(s) 738
BfuI GTATCC 2 cut(s) 45, 1068
BisI GCNGC 6 cut(s) 467, 525, 791, 810, 813, 822
BlsI GCNGC 6 cut(s) 468, 526, 792, 811, 814, 823
Bme1390I CCNGG 2 cut(s) 157, 463
Bme18I GGWCC 2 cut(s) 170, 992
BmgBI CACGTC 1 cut(s) 871
BmgT120I GGNCC 2 cut(s) 170, 992
BmiI GGNNCC 1 cut(s) 252
BmrFI CCNGG 2 cut(s) 157, 463
BmrI ACTGGG 1 cut(s) 117
BmsI GCATC 2 cut(s) 261, 1033
BmuI ACTGGG 1 cut(s) 117
BpmI CTGGAG 2 cut(s) 94, 396
Bpu10I CCTNAGC 1 cut(s) 619
Bsa29I ATCGAT 1 cut(s) 99
BsaAI YACGTR 2 cut(s) 21, 1051
BsaI GGTCTC 1 cut(s) 452
BsaJI CCNNGG 4 cut(s) 742, 791, 1036, 1235
BsaWI WCCGGW 1 cut(s) 994
BsaXI ACNNNNNCTCC 2 cut(s) 1249, 1279
Bsc4I CCNNNNNNNGG 2 cut(s) 676, 1145
Bse118I RCCGGY 2 cut(s) 256, 994
Bse1I ACTGG 4 cut(s) 123, 331, 379, 1293
Bse3DI GCAATG 1 cut(s) 962
BseBI CCWGG 2 cut(s) 157, 463
BseCI ATCGAT 1 cut(s) 99
BseDI CCNNGG 4 cut(s) 742, 791, 1036, 1235
BseGI GGATG 3 cut(s) 189, 801, 902
BseLI CCNNNNNNNGG 2 cut(s) 676, 1145
BseMI GCAATG 1 cut(s) 962
BseMII CTCAG 2 cut(s) 839, 1285
BseNI ACTGG 4 cut(s) 123, 331, 379, 1293
BseRI GAGGAG 3 cut(s) 557, 1053, 1168
BseX3I CGGCCG 1 cut(s) 586
BseXI GCAGC 4 cut(s) 453, 511, 796, 833
BseYI CCCAGC 1 cut(s) 669
BsgI GTGCAG 1 cut(s) 276
Bsh1236I CGCG 1 cut(s) 793
Bsh1285I CGRYCG 1 cut(s) 589
BshFI GGCC 3 cut(s) 289, 588, 1183
BshNI GGYRCC 1 cut(s) 250
BshTI ACCGGT 1 cut(s) 994
BshVI ATCGAT 1 cut(s) 99
BsiEI CGRYCG 1 cut(s) 589
BsiSI CCGG 2 cut(s) 257, 995
BslFI GGGAC 1 cut(s) 105
BslI CCNNNNNNNGG 2 cut(s) 676, 1145
BsmAI GTCTC 4 cut(s) 131, 452, 836, 1234
BsmFI GGGAC 1 cut(s) 105
BsmI GAATGC 1 cut(s) 490
BsnI GGCC 3 cut(s) 289, 588, 1183
Bso31I GGTCTC 1 cut(s) 452
Bsp143I GATC 4 cut(s) 63, 100, 137, 595
Bsp19I CCATGG 1 cut(s) 742
BspACI CCGC 5 cut(s) 427, 791, 793, 812, 1126
BspANI GGCC 3 cut(s) 289, 588, 1183
BspCNI CTCAG 2 cut(s) 840, 1284
BspDI ATCGAT 1 cut(s) 99
BspFNI CGCG 1 cut(s) 793
BspLI GGNNCC 1 cut(s) 252
BspMAI CTGCAG 1 cut(s) 529
BspMI ACCTGC 1 cut(s) 738
BspPI GGATC 1 cut(s) 603
BspQI GCTCTTC 1 cut(s) 726
BspT107I GGYRCC 1 cut(s) 250
BspTNI GGTCTC 1 cut(s) 452
BsrDI GCAATG 1 cut(s) 962
BsrFI RCCGGY 2 cut(s) 256, 994
BsrI ACTGG 4 cut(s) 123, 331, 379, 1293
BssAI RCCGGY 2 cut(s) 256, 994
BssECI CCNNGG 4 cut(s) 742, 791, 1036, 1235
BssMI GATC 4 cut(s) 63, 100, 137, 595
BssT1I CCWWGG 2 cut(s) 742, 1235
Bst2UI CCWGG 2 cut(s) 157, 463
Bst4CI ACNGT 4 cut(s) 297, 551, 613, 1148
Bst6I CTCTTC 2 cut(s) 448, 726
BstBAI YACGTR 2 cut(s) 21, 1051
BstC8I GCNNGC 4 cut(s) 276, 291, 429, 1033
BstDEI CTNAG 3 cut(s) 619, 848, 1271
BstDSI CCRYGG 2 cut(s) 742, 791
BstEII GGTNACC 1 cut(s) 780
BstF5I GGATG 3 cut(s) 189, 801, 902
BstFNI CGCG 1 cut(s) 793
BstKTI GATC 4 cut(s) 66, 103, 140, 598
BstMAI GTCTC 4 cut(s) 131, 452, 836, 1234
BstMBI GATC 4 cut(s) 63, 100, 137, 595
BstMCI CGRYCG 1 cut(s) 589
BstMWI GCNNNNNNNGC 3 cut(s) 433, 818, 821
BstNI CCWGG 2 cut(s) 157, 463
BstNSI RCATGY 4 cut(s) 47, 87, 512, 983
BstPI GGTNACC 1 cut(s) 780
BstSCI CCNGG 2 cut(s) 155, 461
BstSFI CTRYAG 2 cut(s) 525, 550
BstUI CGCG 1 cut(s) 793
BstV1I GCAGC 4 cut(s) 453, 511, 796, 833
BstXI CCANNNNNNTGG 1 cut(s) 338
BstZI CGGCCG 1 cut(s) 586
Bsu15I ATCGAT 1 cut(s) 99
BsuI GTATCC 2 cut(s) 45, 1068
BsuRI GGCC 3 cut(s) 289, 588, 1183
BsuTUI ATCGAT 1 cut(s) 99
BtgI CCRYGG 2 cut(s) 742, 791
BtrI CACGTC 1 cut(s) 871
BtsCI GGATG 3 cut(s) 189, 801, 902
BtsIMutI CAGTG 3 cut(s) 293, 313, 845
BveI ACCTGC 1 cut(s) 738
Cac8I GCNNGC 4 cut(s) 276, 291, 429, 1033
Cfr10I RCCGGY 2 cut(s) 256, 994
Cfr13I GGNCC 2 cut(s) 170, 992
Cfr42I CCGCGG 1 cut(s) 794
ClaI ATCGAT 1 cut(s) 99
CseI GACGC 1 cut(s) 722
CsiI ACCWGGT 1 cut(s) 155
Csp6I GTAC 1 cut(s) 977
CspAI ACCGGT 1 cut(s) 994
CviAII CATG 9 cut(s) 40, 44, 84, 509, 743, 893, 931, 980, 1129
CviQI GTAC 1 cut(s) 977
DdeI CTNAG 3 cut(s) 619, 848, 1271
DpnI GATC 4 cut(s) 65, 102, 139, 597
DpnII GATC 4 cut(s) 63, 100, 137, 595
EaeI YGGCCR 1 cut(s) 586
EagI CGGCCG 1 cut(s) 586
Eam1104I CTCTTC 2 cut(s) 448, 726
EarI CTCTTC 2 cut(s) 448, 726
EclXI CGGCCG 1 cut(s) 586
Eco130I CCWWGG 2 cut(s) 742, 1235
Eco147I AGGCCT 1 cut(s) 1183
Eco31I GGTCTC 1 cut(s) 452
Eco47I GGWCC 2 cut(s) 170, 992
Eco52I CGGCCG 1 cut(s) 586
Eco57I CTGAAG 2 cut(s) 750, 1215
Eco72I CACGTG 1 cut(s) 21
Eco91I GGTNACC 1 cut(s) 780
EcoO65I GGTNACC 1 cut(s) 780
EcoRII CCWGG 2 cut(s) 155, 461
EcoT14I CCWWGG 2 cut(s) 742, 1235
EcoT22I ATGCAT 2 cut(s) 45, 1048
ErhI CCWWGG 2 cut(s) 742, 1235
FaeI CATG 9 cut(s) 43, 47, 87, 512, 746, 896, 934, 983, 1132
FalI AAGNNNNNCTT 2 cut(s) 497, 529
FaqI GGGAC 1 cut(s) 105
FatI CATG 9 cut(s) 39, 43, 83, 508, 742, 892, 930, 979, 1128
FauI CCCGC 1 cut(s) 420
FauNDI CATATG 2 cut(s) 409, 712
Fnu4HI GCNGC 6 cut(s) 467, 525, 791, 810, 813, 822
FokI GGATG 3 cut(s) 176, 808, 909
Fsp4HI GCNGC 6 cut(s) 467, 525, 791, 810, 813, 822
GluI GCNGC 6 cut(s) 467, 525, 791, 810, 813, 822
GsaI CCCAGC 1 cut(s) 673
GsuI CTGGAG 2 cut(s) 94, 396
HaeIII GGCC 3 cut(s) 289, 588, 1183
HapII CCGG 2 cut(s) 257, 995
HgaI GACGC 1 cut(s) 722
Hin1II CATG 9 cut(s) 43, 47, 87, 512, 746, 896, 934, 983, 1132
HincII GTYRAC 1 cut(s) 832
HindII GTYRAC 1 cut(s) 832
HindIII AAGCTT 2 cut(s) 434, 616
HinfI GANTC 3 cut(s) 96, 558, 1132
HpaII CCGG 2 cut(s) 257, 995
HphI GGTGA 5 cut(s) 60, 280, 353, 491, 1224
Hpy166II GTNNAC 3 cut(s) 607, 832, 992
Hpy188I TCNGA 3 cut(s) 240, 1113, 1195
Hpy188III TCNNGA 2 cut(s) 514, 918
Hpy8I GTNNAC 3 cut(s) 607, 832, 992
Hpy99I CGWCG 1 cut(s) 872
HpyAV CCTTC 3 cut(s) 955, 1190, 1217
HpyCH4III ACNGT 4 cut(s) 297, 551, 613, 1148
HpyCH4IV ACGT 4 cut(s) 20, 629, 870, 1050
HpyF10VI GCNNNNNNNGC 3 cut(s) 433, 818, 821
HpyF3I CTNAG 3 cut(s) 619, 848, 1271
HpySE526I ACGT 4 cut(s) 20, 629, 870, 1050
Hsp92II CATG 9 cut(s) 43, 47, 87, 512, 746, 896, 934, 983, 1132
KspI CCGCGG 1 cut(s) 794
Kzo9I GATC 4 cut(s) 63, 100, 137, 595
LguI GCTCTTC 1 cut(s) 726
LmnI GCTCC 2 cut(s) 377, 397
Lsp1109I GCAGC 4 cut(s) 453, 511, 796, 833
LweI GCATC 2 cut(s) 261, 1033
MabI ACCWGGT 1 cut(s) 155
MaeII ACGT 4 cut(s) 20, 629, 870, 1050
MaeIII GTNAC 3 cut(s) 151, 646, 780
MalI GATC 4 cut(s) 65, 102, 139, 597
MboI GATC 4 cut(s) 63, 100, 137, 595
MboII GAAGA 6 cut(s) 356, 375, 465, 713, 977, 1127
MfeI CAATTG 1 cut(s) 882
MluCI AATT 9 cut(s) 203, 241, 369, 402, 519, 685, 882, 1017, 1114
MmeI TCCRAC 3 cut(s) 657, 1200, 1280
Mph1103I ATGCAT 2 cut(s) 45, 1048
MseI TTAA 4 cut(s) 228, 564, 759, 1016
MslI CAYNNNNRTG 2 cut(s) 659, 984
MspA1I CMGCKG 2 cut(s) 673, 793
MspI CCGG 2 cut(s) 257, 995
MspR9I CCNGG 2 cut(s) 157, 463
MunI CAATTG 1 cut(s) 882
Mva1269I GAATGC 1 cut(s) 490
MvaI CCWGG 2 cut(s) 157, 463
MvnI CGCG 1 cut(s) 793
MwoI GCNNNNNNNGC 3 cut(s) 433, 818, 821
NcoI CCATGG 1 cut(s) 742
NdeI CATATG 2 cut(s) 409, 712
NdeII GATC 4 cut(s) 63, 100, 137, 595
NlaIII CATG 9 cut(s) 43, 47, 87, 512, 746, 896, 934, 983, 1132
NlaIV GGNNCC 1 cut(s) 252
NmeAIII GCCGAG 2 cut(s) 614, 1061
NsiI ATGCAT 2 cut(s) 45, 1048
NspI RCATGY 4 cut(s) 47, 87, 512, 983
OliI CACNNNNGTG 1 cut(s) 659
PceI AGGCCT 1 cut(s) 1183
PciI ACATGT 2 cut(s) 83, 979
PciSI GCTCTTC 1 cut(s) 726
PctI GAATGC 1 cut(s) 490
PfeI GAWTC 3 cut(s) 96, 558, 1132
PflMI CCANNNNNTGG 1 cut(s) 676
PinAI ACCGGT 1 cut(s) 994
PkrI GCNGC 6 cut(s) 468, 526, 792, 811, 814, 823
PmaCI CACGTG 1 cut(s) 21
PmlI CACGTG 1 cut(s) 21
Ppu21I YACGTR 2 cut(s) 21, 1051
PscI ACATGT 2 cut(s) 83, 979
PshBI ATTAAT 1 cut(s) 564
PsiI TTATAA 1 cut(s) 368
Psp6I CCWGG 2 cut(s) 155, 461
PspCI CACGTG 1 cut(s) 21
PspEI GGTNACC 1 cut(s) 780
PspFI CCCAGC 1 cut(s) 669
PspGI CCWGG 2 cut(s) 155, 461
PspN4I GGNNCC 1 cut(s) 252
PspPI GGNCC 2 cut(s) 170, 992
PstI CTGCAG 1 cut(s) 529
PvuII CAGCTG 1 cut(s) 673
RsaI GTAC 1 cut(s) 978
RsaNI GTAC 1 cut(s) 977
RseI CAYNNNNRTG 2 cut(s) 659, 984
SacII CCGCGG 1 cut(s) 794
SapI GCTCTTC 1 cut(s) 726
SaqAI TTAA 4 cut(s) 228, 564, 759, 1016
SatI GCNGC 6 cut(s) 467, 525, 791, 810, 813, 822
Sau3AI GATC 4 cut(s) 63, 100, 137, 595
Sau96I GGNCC 2 cut(s) 170, 992
ScrFI CCNGG 2 cut(s) 157, 463
SexAI ACCWGGT 1 cut(s) 155
SfaNI GCATC 2 cut(s) 261, 1033
SfcI CTRYAG 2 cut(s) 525, 550
Sfr303I CCGCGG 1 cut(s) 794
SgrBI CCGCGG 1 cut(s) 794
SinI GGWCC 2 cut(s) 170, 992
SmiMI CAYNNNNRTG 2 cut(s) 659, 984
Sse9I AATT 9 cut(s) 203, 241, 369, 402, 519, 685, 882, 1017, 1114
SseBI AGGCCT 1 cut(s) 1183
SsiI CCGC 5 cut(s) 427, 791, 793, 812, 1126
SspI AATATT 1 cut(s) 1108
StuI AGGCCT 1 cut(s) 1183
StyD4I CCNGG 2 cut(s) 155, 461
StyI CCWWGG 2 cut(s) 742, 1235
TaaI ACNGT 4 cut(s) 297, 551, 613, 1148
TaiI ACGT 4 cut(s) 23, 632, 873, 1053
TaqI TCGA 3 cut(s) 94, 99, 136
TasI AATT 9 cut(s) 203, 241, 369, 402, 519, 685, 882, 1017, 1114
TauI GCSGC 2 cut(s) 793, 815
TfiI GAWTC 3 cut(s) 96, 558, 1132
Tru1I TTAA 4 cut(s) 228, 564, 759, 1016
Tru9I TTAA 4 cut(s) 228, 564, 759, 1016
TscAI CASTG 3 cut(s) 300, 313, 852
TseI GCWGC 4 cut(s) 466, 524, 809, 821
TspDTI ATGAA 7 cut(s) 197, 292, 426, 550, 582, 919, 1179
TspGWI ACGGA 1 cut(s) 107
TspRI CASTG 3 cut(s) 300, 313, 852
Van91I CCANNNNNTGG 1 cut(s) 676
VpaK11BI GGWCC 2 cut(s) 170, 992
VspI ATTAAT 1 cut(s) 564
XapI RAATTY 2 cut(s) 241, 685
XceI RCATGY 4 cut(s) 47, 87, 512, 983
Zsp2I ATGCAT 2 cut(s) 45, 1048
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.