Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012939

Physical Location & Seq

Genomic Coordinates Reverse (-)

6284308 .. 6287293

Gene Structure 2986 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G10050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGATTCGTCTTCAAATTTGAATCCTCTTCGTGAAGATACCTCAGAGGAACATTTAGAACCCATAGAAGCTCCGGCGTCTGTCTTCGCCGCTCGTCCTCTTCGTCCTCCTTCTACGAATTCGTCGGAGAAGTATTCGCCTGTAGAATGGAAAAGCTATTTTGATAAAGAAGATGATATATCAATCACTGGCTCTGATGATGTGTTTCATGTGTATATGGCAGGAAATGAAGGACCTGTTGTCTTTTGTCTCCATGGTGGTGGCTACTCTGGGCTCTCGTTTTCTATAGTAGCAAGTAAAATTAAGGAGAAAGCACGTGTGGTTGCGATGGACTTGAGAGGGCACGGTAAATCGGTTTCGGAGAACGAATTGGAGTTATCGCTTGAGACAATGAGCAATGATGTTTTGGCTGTCATTAAGGAATTGTATGGAGACTCTCCTCCAGCTATTGTGCTAGTTGGTCACAGCATGGGAGGTTCGGTCGCTGTGCAAGTTGCTGCAAACAAAACATTGCCTAGCTTGGCTGGGCTTGTCGTTGTGGATGTTGTTGAGGGTACTGCTATTTCCTCATTGATTCACATGCAGAAAATTCTTTCAAACAGAATGCAACATTTTCCCAGCATCGAAAAAGCAATTGAATACAGCGTTAGAGGAGGGTCATTAAGAAACATTGATTCAGCCCGTGTCTCTATCCCCACAACTCTCAAATATGATGATTCAAAGCATTGCTACGTTTACCGAACACGTCTAGAGGAAACAGAGCAATATTGGAAAGGCTGGTACGATGGTCTCTCAGAGAAGTTTTTGTCATCCCCAGTTCCGAAACTCTTGCTATTAGCTGGAACTGATAGGTTGGACAGGACCCTCACAATTGGTCAAATGCAAGGAAAGTTTCAGATGATTGTGGTCAAACACACCGGACATGCCATACAGGAAGATGTACCGGAGGAGTTTGCGAATCTAGTTCTGAATTTCATATCACGTAACAGAATTGGTCCTCATGGTGTTGAGATACCAGGAATGTGGAAACCTTCACAACAGACTAAGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0006464 GO:0006482 GO:0006807 GO:0008150 GO:0008152 GO:0008214 GO:0009987 GO:0010921 GO:0016787 GO:0016788 GO:0019208 GO:0019220 GO:0019222 GO:0019538 GO:0019888 GO:0019899 GO:0019902 GO:0019903 GO:0030234 GO:0031323 GO:0031399 GO:0032268 GO:0035303 GO:0035304 GO:0036211 GO:0043170 GO:0043412 GO:0043666 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051336 GO:0051721 GO:0051722 GO:0051723 GO:0052689 GO:0060255 GO:0065007 GO:0065009 GO:0070988 GO:0071704 GO:0080090 GO:0098772 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_6

Protein Analysis

350

Amino Acids

38.56

Weight (kDa)

5.69

Isoelectric Point (pI)

43.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	79 - 313	1.3e-17	alpha/beta hydrolase fold
Hydrolase_4	PF12146	80 - 180	3.1e-12	Serine aminopeptidase, S33
Abhydrolase_6	PF12697	81 - 320	5.9e-26	Alpha/beta hydrolase family
Thioesterase	PF00975	81 - 167	9.9e-08	Thioesterase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012939)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10050 AT4G10050
fragaria_vesca	FvH4_5g33360 FvH4_5g33360
malus_domestica	MD08G1213000.v1.1 MD15G1395500.v1.1
prunus_persica	Prupe.1G544300_v2.0.a1 Prupe.1G544300_v2.0.a1 Prupe.1G544300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0232091
rosa_laevigata	RLG00000001392
rosa_multiflora	Rmu_sc0000616.1_g000007 Rmu_sc0004618.1_g000006
rosa_roxburghii	Rroxscaffold_3G00228820
rosa_rugosa	Rorug07G0269000
rosa_samantha	Rh7BG397600 Rh7CG443900
rosa_wichuraiana	Rw7G035030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	92
AciI	CCGC	1 cut(s)	90
AcsI	RAATTY	4 cut(s)	16, 118, 588, 970
AcvI	CACGTG	1 cut(s)	317
AcyI	GRCGYC	1 cut(s)	77
AfaI	GTAC	3 cut(s)	556, 782, 942
AflIII	ACRYGT	2 cut(s)	316, 743
AgsI	TTSAA	5 cut(s)	15, 22, 597, 638, 720
AhdI	GACNNNNNGTC	1 cut(s)	239
AjiI	CACGTC	1 cut(s)	746
AjnI	CCWGG	1 cut(s)	1015
AluBI	AGCT	5 cut(s)	71, 156, 446, 519, 839
AluI	AGCT	5 cut(s)	71, 156, 446, 519, 839
Alw26I	GTCTC	5 cut(s)	254, 380, 426, 691, 794
ApeKI	GCWGC	1 cut(s)	497
ApoI	RAATTY	4 cut(s)	16, 118, 588, 970
AspS9I	GGNCC	3 cut(s)	233, 861, 995
AvaII	GGWCC	3 cut(s)	233, 861, 995
BaeGI	GKGCMC	1 cut(s)	345
BaeI	ACNNNNGTAYC	2 cut(s)	772, 805
BanII	GRGCYC	1 cut(s)	276
BbrPI	CACGTG	1 cut(s)	317
BbsI	GAAGAC	2 cut(s)	3, 76
BbvI	GCAGC	1 cut(s)	484
BccI	CCATC	2 cut(s)	322, 779
BcgI	CGANNNNNNTGC	2 cut(s)	811, 845
BciT130I	CCWGG	1 cut(s)	1017
BcoDI	GTCTC	5 cut(s)	254, 380, 426, 691, 794
BfaI	CTAG	4 cut(s)	455, 516, 749, 962
BfmI	CTRYAG	2 cut(s)	141, 285
BisI	GCNGC	2 cut(s)	90, 498
BlsI	GCNGC	2 cut(s)	91, 499
Bme1390I	CCNGG	1 cut(s)	1017
Bme18I	GGWCC	3 cut(s)	233, 861, 995
BmeRI	GACNNNNNGTC	1 cut(s)	239
BmgBI	CACGTC	1 cut(s)	746
BmgT120I	GGNCC	3 cut(s)	233, 861, 995
BmiI	GGNNCC	1 cut(s)	863
BmrFI	CCNGG	1 cut(s)	1017
BmrI	ACTGGG	1 cut(s)	809
BmsI	GCATC	1 cut(s)	630
BmuI	ACTGGG	1 cut(s)	809
BpiI	GAAGAC	2 cut(s)	3, 76
BpmI	CTGGAG	1 cut(s)	426
BpuEI	CTTGAG	2 cut(s)	355, 404
BsaAI	YACGTR	2 cut(s)	317, 983
BsaHI	GRCGYC	1 cut(s)	77
BsaI	GGTCTC	1 cut(s)	794
BsaJI	CCNNGG	1 cut(s)	253
BsaWI	WCCGGW	2 cut(s)	917, 943
BsaXI	ACNNNNNCTCC	2 cut(s)	465, 495
Bse1I	ACTGG	2 cut(s)	193, 815
Bse3DI	GCAATG	3 cut(s)	403, 509, 724
BseBI	CCWGG	1 cut(s)	1017
BseDI	CCNNGG	1 cut(s)	253
BseGI	GGATG	2 cut(s)	547, 809
BseMI	GCAATG	3 cut(s)	403, 509, 724
BseMII	CTCAG	2 cut(s)	57, 807
BseNI	ACTGG	2 cut(s)	193, 815
BseRI	GAGGAG	3 cut(s)	429, 666, 962
BseSI	GKGCMC	1 cut(s)	345
BseXI	GCAGC	1 cut(s)	484
BseYI	CCCAGC	2 cut(s)	524, 617
Bsh1285I	CGRYCG	1 cut(s)	483
BsiEI	CGRYCG	1 cut(s)	483
BsiSI	CCGG	3 cut(s)	74, 918, 944
BsmAI	GTCTC	5 cut(s)	254, 380, 426, 691, 794
BsmI	GAATGC	1 cut(s)	609
Bso31I	GGTCTC	1 cut(s)	794
Bsp1286I	GDGCHC	2 cut(s)	276, 345
Bsp19I	CCATGG	1 cut(s)	253
BspACI	CCGC	1 cut(s)	90
BspCNI	CTCAG	2 cut(s)	56, 806
BspLI	GGNNCC	1 cut(s)	863
BspTNI	GGTCTC	1 cut(s)	794
BsrBI	CCGCTC	1 cut(s)	92
BsrDI	GCAATG	3 cut(s)	403, 509, 724
BsrI	ACTGG	2 cut(s)	193, 815
BssECI	CCNNGG	1 cut(s)	253
BssNI	GRCGYC	1 cut(s)	77
BssT1I	CCWWGG	1 cut(s)	253
Bst2UI	CCWGG	1 cut(s)	1017
Bst4CI	ACNGT	1 cut(s)	347
Bst6I	CTCTTC	2 cut(s)	33, 105
BstACI	GRCGYC	1 cut(s)	77
BstBAI	YACGTR	2 cut(s)	317, 983
BstDEI	CTNAG	3 cut(s)	43, 793, 1044
BstDSI	CCRYGG	1 cut(s)	253
BstF5I	GGATG	2 cut(s)	547, 809
BstMAI	GTCTC	5 cut(s)	254, 380, 426, 691, 794
BstMCI	CGRYCG	1 cut(s)	483
BstNI	CCWGG	1 cut(s)	1017
BstNSI	RCATGY	2 cut(s)	583, 926
BstSCI	CCNGG	1 cut(s)	1015
BstSFI	CTRYAG	2 cut(s)	141, 285
BstSLI	GKGCMC	1 cut(s)	345
BstV1I	GCAGC	1 cut(s)	484
BstV2I	GAAGAC	2 cut(s)	3, 76
BstXI	CCANNNNNNTGG	2 cut(s)	260, 1023
BtgI	CCRYGG	1 cut(s)	253
BtgZI	GCGATG	1 cut(s)	341
BtrI	CACGTC	1 cut(s)	746
BtsCI	GGATG	2 cut(s)	547, 809
BtsIMutI	CAGTG	1 cut(s)	186
Cfr13I	GGNCC	3 cut(s)	233, 861, 995
CseI	GACGC	1 cut(s)	66
Csp6I	GTAC	3 cut(s)	555, 781, 941
CviAII	CATG	6 cut(s)	209, 254, 469, 580, 923, 1001
CviQI	GTAC	3 cut(s)	555, 781, 941
DdeI	CTNAG	3 cut(s)	43, 793, 1044
DriI	GACNNNNNGTC	1 cut(s)	239
Eam1104I	CTCTTC	2 cut(s)	33, 105
Eam1105I	GACNNNNNGTC	1 cut(s)	239
EarI	CTCTTC	2 cut(s)	33, 105
Eco130I	CCWWGG	1 cut(s)	253
Eco24I	GRGCYC	1 cut(s)	276
Eco31I	GGTCTC	1 cut(s)	794
Eco47I	GGWCC	3 cut(s)	233, 861, 995
Eco72I	CACGTG	1 cut(s)	317
EcoO109I	RGGNCCY	2 cut(s)	233, 861
EcoRI	GAATTC	1 cut(s)	118
EcoRII	CCWGG	1 cut(s)	1015
EcoT14I	CCWWGG	1 cut(s)	253
EcoT38I	GRGCYC	1 cut(s)	276
ErhI	CCWWGG	1 cut(s)	253
FaeI	CATG	6 cut(s)	212, 257, 472, 583, 926, 1004
FatI	CATG	6 cut(s)	208, 253, 468, 579, 922, 1000
Fnu4HI	GCNGC	2 cut(s)	90, 498
FokI	GGATG	2 cut(s)	554, 796
FriOI	GRGCYC	1 cut(s)	276
Fsp4HI	GCNGC	2 cut(s)	90, 498
FspBI	CTAG	4 cut(s)	455, 516, 749, 962
GluI	GCNGC	2 cut(s)	90, 498
GsaI	CCCAGC	2 cut(s)	528, 621
GsuI	CTGGAG	1 cut(s)	426
HapII	CCGG	3 cut(s)	74, 918, 944
HgaI	GACGC	1 cut(s)	66
Hin1I	GRCGYC	1 cut(s)	77
Hin1II	CATG	6 cut(s)	212, 257, 472, 583, 926, 1004
HinfI	GANTC	7 cut(s)	5, 22, 434, 574, 674, 716, 958
HpaII	CCGG	3 cut(s)	74, 918, 944
Hpy166II	GTNNAC	1 cut(s)	736
Hpy188I	TCNGA	8 cut(s)	46, 127, 196, 361, 796, 822, 897, 969
Hpy188III	TCNNGA	2 cut(s)	32, 749
Hpy8I	GTNNAC	1 cut(s)	736
Hpy99I	CGWCG	1 cut(s)	127
HpyAV	CCTTC	3 cut(s)	120, 224, 1041
HpyCH4III	ACNGT	1 cut(s)	347
HpyCH4IV	ACGT	4 cut(s)	316, 732, 745, 982
HpyCH4V	TGCA	5 cut(s)	490, 500, 583, 607, 883
HpyF3I	CTNAG	3 cut(s)	43, 793, 1044
HpySE526I	ACGT	4 cut(s)	316, 732, 745, 982
Hsp92I	GRCGYC	1 cut(s)	77
Hsp92II	CATG	6 cut(s)	212, 257, 472, 583, 926, 1004
LmnI	GCTCC	1 cut(s)	76
Lsp1109I	GCAGC	1 cut(s)	484
LweI	GCATC	1 cut(s)	630
MaeI	CTAG	4 cut(s)	455, 516, 749, 962
MaeII	ACGT	4 cut(s)	316, 732, 745, 982
MaeIII	GTNAC	2 cut(s)	461, 983
MbiI	CCGCTC	1 cut(s)	92
MboII	GAAGA	7 cut(s)	3, 20, 47, 76, 92, 182, 947
MfeI	CAATTG	2 cut(s)	633, 870
MhlI	GDGCHC	2 cut(s)	276, 345
MlyI	GAGTC	1 cut(s)	428
MmeI	TCCRAC	2 cut(s)	105, 834
MseI	TTAA	3 cut(s)	303, 417, 662
MslI	CAYNNNNRTG	1 cut(s)	258
MspI	CCGG	3 cut(s)	74, 918, 944
MspR9I	CCNGG	1 cut(s)	1017
MunI	CAATTG	2 cut(s)	633, 870
Mva1269I	GAATGC	1 cut(s)	609
MvaI	CCWGG	1 cut(s)	1017
NcoI	CCATGG	1 cut(s)	253
NlaIII	CATG	6 cut(s)	212, 257, 472, 583, 926, 1004
NlaIV	GGNNCC	1 cut(s)	863
NmuCI	GTSAC	1 cut(s)	461
NspI	RCATGY	2 cut(s)	583, 926
PcsI	WCGNNNNNNNCGW	1 cut(s)	100
PctI	GAATGC	1 cut(s)	609
PfeI	GAWTC	6 cut(s)	5, 22, 574, 674, 716, 958
PkrI	GCNGC	2 cut(s)	91, 499
PleI	GAGTC	1 cut(s)	428
PmaCI	CACGTG	1 cut(s)	317
PmlI	CACGTG	1 cut(s)	317
PpsI	GAGTC	1 cut(s)	428
Ppu21I	YACGTR	2 cut(s)	317, 983
PpuMI	RGGWCCY	2 cut(s)	233, 861
Psp5II	RGGWCCY	2 cut(s)	233, 861
Psp6I	CCWGG	1 cut(s)	1015
PspCI	CACGTG	1 cut(s)	317
PspFI	CCCAGC	2 cut(s)	524, 617
PspGI	CCWGG	1 cut(s)	1015
PspN4I	GGNNCC	1 cut(s)	863
PspPI	GGNCC	3 cut(s)	233, 861, 995
PspPPI	RGGWCCY	2 cut(s)	233, 861
RsaI	GTAC	3 cut(s)	556, 782, 942
RsaNI	GTAC	3 cut(s)	555, 781, 941
RseI	CAYNNNNRTG	1 cut(s)	258
SaqAI	TTAA	3 cut(s)	303, 417, 662
SatI	GCNGC	2 cut(s)	90, 498
Sau96I	GGNCC	3 cut(s)	233, 861, 995
SchI	GAGTC	1 cut(s)	428
ScrFI	CCNGG	1 cut(s)	1017
SduI	GDGCHC	2 cut(s)	276, 345
SfaNI	GCATC	1 cut(s)	630
SfcI	CTRYAG	2 cut(s)	141, 285
SinI	GGWCC	3 cut(s)	233, 861, 995
SmiMI	CAYNNNNRTG	1 cut(s)	258
SmlI	CTYRAG	2 cut(s)	334, 383
SmoI	CTYRAG	2 cut(s)	334, 383
SsiI	CCGC	1 cut(s)	90
SspI	AATATT	1 cut(s)	767
SspMI	CTAG	4 cut(s)	455, 516, 749, 962
StyD4I	CCNGG	1 cut(s)	1015
StyI	CCWWGG	1 cut(s)	253
TaaI	ACNGT	1 cut(s)	347
TaiI	ACGT	4 cut(s)	319, 735, 748, 985
TaqI	TCGA	1 cut(s)	624
TaqII	GACCGA	1 cut(s)	469
TauI	GCSGC	1 cut(s)	92
TfiI	GAWTC	6 cut(s)	5, 22, 574, 674, 716, 958
Tru1I	TTAA	3 cut(s)	303, 417, 662
Tru9I	TTAA	3 cut(s)	303, 417, 662
TscAI	CASTG	1 cut(s)	193
TseFI	GTSAC	1 cut(s)	461
TseI	GCWGC	1 cut(s)	497
Tsp45I	GTSAC	1 cut(s)	461
TspDTI	ATGAA	3 cut(s)	197, 243, 964
TspRI	CASTG	1 cut(s)	193
VpaK11BI	GGWCC	3 cut(s)	233, 861, 995
XapI	RAATTY	4 cut(s)	16, 118, 588, 970
XbaI	TCTAGA	1 cut(s)	748
XceI	RCATGY	2 cut(s)	583, 926
XspI	CTAG	4 cut(s)	455, 516, 749, 962

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.