Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0012939

Physical Location & Seq

Genomic Coordinates Forward (+)

14989441 .. 14996322

Gene Structure 6882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001392

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGATTCTTCAAACCTCACTTCGCTTCCCGAGGACACCCCCGAATCCAATCAACCCCACCACCACCAACAGCCACCCCAACCCCGTCCTCTCTCCGCCTTCGCCGCCCGCCCCGATCGCCCAGCCACTCAGAGTAGCTCGCAAAAGTTCGCTGCTTTGGATTGGAAGGACTATTTCGACAAAGAAGATGATATCTCCATTCCGGGCTCCGACGATGTTTTTCATGTATATATGGCAGGAACAGAGGGTCCGGTTGTGTTTTGCCTACATGGAGGTGGCTACTCAGGGCTTTCATTTGCCTTGTCAGCAAGGCAAATCAAGGAGAAGGCTCGAGTAGTTGCCATGGACTTGAGAGGACATGGAAGGTCAGCGACTGAAAATGAGACTGATCTTTCTATTGAGACCATGTGCAATGATGTTGAGGCTGTTCTGAAAGCAATGTATGGAGATTCTCCTCCTGCAATTGTGCTTGTTGGCCACAGTATGGGAGGGTCAGTAGCTGTGCATGTTGCTGCAAGAAAAGCATTCCCTAGCTTGGCTGGGCTGATTGTTGTAGATGTTGTTGAGGGAACAGCAATGGCTTCATTGATTCATATGCAAAAAATCCTATCAGGCAGGACGCATTATTTTTCAAGCATTGAAAAAGCGATAGAATCGACTGTAAAGGGAGGCTCTTTGAGAAACATTGAGTCTGCTCGTGTATCAGTACCTGCCACATTAAAGTATGATGATTCAAAGAAATGTTTCATTTACAGAGCACGACTCGAAGAAACAGAACAATATTGGAAAAGCTGGTATGAAGGCCTTTCTGAAAAATTTCTTTCATCTCCTGTTCCAAAGCTCCTGCTTTTAGCTGGAACAGACAGACTCGACAGAACTCTGACAATTGGTCAAATGCAAGGCAAGTTCCAAATGGTGGTTGTCAGACATACTGGGCATGCCATACAAGAAGATGTACCTGATGAATTTGCATCACTAATAATAAATTTCATATCTCGTAACCGTATAGGCCCACATGGAGTTGAGATTCCAGGACTTCGTCGGCCATCCCAGCCCAAACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0006464 GO:0006482 GO:0006807 GO:0008150 GO:0008152 GO:0008214 GO:0009987 GO:0010921 GO:0016787 GO:0016788 GO:0019208 GO:0019220 GO:0019222 GO:0019538 GO:0019888 GO:0019899 GO:0019902 GO:0019903 GO:0030234 GO:0031323 GO:0031399 GO:0032268 GO:0035303 GO:0035304 GO:0036211 GO:0043170 GO:0043412 GO:0043666 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051336 GO:0051721 GO:0051722 GO:0051723 GO:0052689 GO:0060255 GO:0065007 GO:0065009 GO:0070988 GO:0071704 GO:0080090 GO:0098772 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_6

Protein Analysis

355

Amino Acids

38.85

Weight (kDa)

6.36

Isoelectric Point (pI)

51.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	84 - 318	1.2e-18	alpha/beta hydrolase fold
Hydrolase_4	PF12146	85 - 184	2.8e-13	Serine aminopeptidase, S33
Abhydrolase_6	PF12697	86 - 325	4.5e-26	Alpha/beta hydrolase family
Thioesterase	PF00975	86 - 173	3.7e-07	Thioesterase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012939)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10050 AT4G10050
fragaria_vesca	FvH4_5g33360 FvH4_5g33360
malus_domestica	MD08G1213000.v1.1 MD15G1395500.v1.1
prunus_persica	Prupe.1G544300_v2.0.a1 Prupe.1G544300_v2.0.a1 Prupe.1G544300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0232091
rosa_laevigata	RLG00000001392
rosa_multiflora	Rmu_sc0000616.1_g000007 Rmu_sc0004618.1_g000006
rosa_roxburghii	Rroxscaffold_3G00228820
rosa_rugosa	Rorug07G0269000
rosa_samantha	Rh7BG397600 Rh7CG443900
rosa_wichuraiana	Rw7G035030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	718
AccB7I	CCANNNNNTGG	2 cut(s)	484, 916
AciI	CCGC	3 cut(s)	96, 105, 109
AcoI	YGGCCR	2 cut(s)	475, 1043
AcsI	RAATTY	3 cut(s)	815, 965, 985
AfaI	GTAC	2 cut(s)	708, 957
AfiI	CCNNNNNNNGG	3 cut(s)	484, 535, 916
AgsI	TTSAA	4 cut(s)	12, 633, 641, 735
AhdI	GACNNNNNGTC	1 cut(s)	888
AjnI	CCWGG	1 cut(s)	1030
AloI	GAACNNNNNNTCC	2 cut(s)	232, 264
AluBI	AGCT	6 cut(s)	138, 500, 534, 792, 841, 854
AluI	AGCT	6 cut(s)	138, 500, 534, 792, 841, 854
Alw21I	GWGCWC	1 cut(s)	760
Alw26I	GTCTC	2 cut(s)	377, 395
AlwNI	CAGNNNCTG	3 cut(s)	374, 500, 710
Ama87I	CYCGRG	2 cut(s)	29, 330
AoxI	GGCC	4 cut(s)	475, 802, 1009, 1043
ApeKI	GCWGC	2 cut(s)	152, 512
ApoI	RAATTY	3 cut(s)	815, 965, 985
Asp700I	GAANNNNTTC	2 cut(s)	743, 816
AspS9I	GGNCC	2 cut(s)	248, 1010
AsuC2I	CCSGG	1 cut(s)	204
AvaI	CYCGRG	2 cut(s)	29, 330
AvaII	GGWCC	1 cut(s)	248
BalI	TGGCCA	1 cut(s)	477
BanII	GRGCYC	1 cut(s)	209
BauI	CACGAG	1 cut(s)	696
Bbv12I	GWGCWC	1 cut(s)	760
BbvI	GCAGC	2 cut(s)	139, 499
BccI	CCATC	1 cut(s)	1054
BciT130I	CCWGG	1 cut(s)	1032
BcnI	CCSGG	1 cut(s)	204
BcoDI	GTCTC	2 cut(s)	377, 395
BfaI	CTAG	1 cut(s)	531
BfuAI	ACCTGC	1 cut(s)	718
BisI	GCNGC	3 cut(s)	105, 153, 513
BlsI	GCNGC	3 cut(s)	106, 154, 514
Bme1390I	CCNGG	2 cut(s)	204, 1032
Bme18I	GGWCC	1 cut(s)	248
BmeRI	GACNNNNNGTC	1 cut(s)	888
BmeT110I	CYCGRG	2 cut(s)	29, 330
BmgT120I	GGNCC	2 cut(s)	248, 1010
BmiI	GGNNCC	2 cut(s)	208, 249
BmrFI	CCNGG	2 cut(s)	204, 1032
BmrI	ACTGGG	1 cut(s)	942
BmsI	GCATC	1 cut(s)	980
BmuI	ACTGGG	1 cut(s)	942
BplI	GAGNNNNNCTC	2 cut(s)	747, 779
BpuEI	CTTGAG	1 cut(s)	370
BpuMI	CCSGG	1 cut(s)	204
BsaI	GGTCTC	1 cut(s)	395
BsaJI	CCNNGG	2 cut(s)	30, 342
BsaWI	WCCGGW	1 cut(s)	250
BsaXI	ACNNNNNCTCC	2 cut(s)	480, 510
Bsc4I	CCNNNNNNNGG	3 cut(s)	484, 535, 916
Bse1I	ACTGG	1 cut(s)	937
Bse3DI	GCAATG	3 cut(s)	418, 444, 582
BseBI	CCWGG	1 cut(s)	1032
BseDI	CCNNGG	2 cut(s)	30, 342
BseGI	GGATG	1 cut(s)	1046
BseLI	CCNNNNNNNGG	3 cut(s)	484, 535, 916
BseMI	GCAATG	3 cut(s)	418, 444, 582
BseMII	CTCAG	2 cut(s)	143, 297
BseNI	ACTGG	1 cut(s)	937
BseRI	GAGGAG	1 cut(s)	444
BseXI	GCAGC	2 cut(s)	139, 499
BseYI	CCCAGC	3 cut(s)	121, 539, 1050
Bsh1285I	CGRYCG	1 cut(s)	118
BshFI	GGCC	4 cut(s)	477, 804, 1011, 1045
BsiEI	CGRYCG	1 cut(s)	118
BsiHKAI	GWGCWC	1 cut(s)	760
BsiHKCI	CYCGRG	2 cut(s)	29, 330
BsiSI	CCGG	2 cut(s)	203, 251
BslI	CCNNNNNNNGG	3 cut(s)	484, 535, 916
BsmAI	GTCTC	2 cut(s)	377, 395
BsmI	GAATGC	1 cut(s)	524
BsnI	GGCC	4 cut(s)	477, 804, 1011, 1045
Bso31I	GGTCTC	1 cut(s)	395
BsoBI	CYCGRG	2 cut(s)	29, 330
Bsp1286I	GDGCHC	2 cut(s)	209, 760
Bsp143I	GATC	2 cut(s)	115, 388
Bsp19I	CCATGG	1 cut(s)	342
BspACI	CCGC	3 cut(s)	96, 105, 109
BspANI	GGCC	4 cut(s)	477, 804, 1011, 1045
BspCNI	CTCAG	2 cut(s)	142, 296
BspLI	GGNNCC	2 cut(s)	208, 249
BspMI	ACCTGC	1 cut(s)	718
BspTNI	GGTCTC	1 cut(s)	395
BsrDI	GCAATG	3 cut(s)	418, 444, 582
BsrI	ACTGG	1 cut(s)	937
BssECI	CCNNGG	2 cut(s)	30, 342
BssMI	GATC	2 cut(s)	115, 388
BssSI	CACGAG	1 cut(s)	696
BssT1I	CCWWGG	1 cut(s)	342
Bst2BI	CACGAG	1 cut(s)	696
Bst2UI	CCWGG	1 cut(s)	1032
Bst4CI	ACNGT	3 cut(s)	482, 661, 1004
BstC8I	GCNNGC	3 cut(s)	109, 140, 939
BstDEI	CTNAG	2 cut(s)	129, 283
BstDSI	CCRYGG	1 cut(s)	342
BstF5I	GGATG	1 cut(s)	1046
BstKTI	GATC	2 cut(s)	118, 391
BstMAI	GTCTC	2 cut(s)	377, 395
BstMBI	GATC	2 cut(s)	115, 388
BstMCI	CGRYCG	1 cut(s)	118
BstMWI	GCNNNNNNNGC	5 cut(s)	104, 117, 305, 521, 1051
BstNI	CCWGG	1 cut(s)	1032
BstNSI	RCATGY	2 cut(s)	509, 941
BstSCI	CCNGG	2 cut(s)	202, 1030
BstV1I	GCAGC	2 cut(s)	139, 499
BsuRI	GGCC	4 cut(s)	477, 804, 1011, 1045
BtgI	CCRYGG	1 cut(s)	342
BtsCI	GGATG	1 cut(s)	1046
BveI	ACCTGC	1 cut(s)	718
Cac8I	GCNNGC	3 cut(s)	109, 140, 939
CaiI	CAGNNNCTG	3 cut(s)	374, 500, 710
Cfr13I	GGNCC	2 cut(s)	248, 1010
CseI	GACGC	1 cut(s)	628
Csp6I	GTAC	2 cut(s)	707, 956
CviAII	CATG	8 cut(s)	224, 269, 343, 359, 406, 506, 938, 1016
CviQI	GTAC	2 cut(s)	707, 956
DdeI	CTNAG	2 cut(s)	129, 283
DpnI	GATC	2 cut(s)	117, 390
DpnII	GATC	2 cut(s)	115, 388
DriI	GACNNNNNGTC	1 cut(s)	888
EaeI	YGGCCR	2 cut(s)	475, 1043
Eam1105I	GACNNNNNGTC	1 cut(s)	888
EciI	GGCGGA	1 cut(s)	85
Eco130I	CCWWGG	1 cut(s)	342
Eco147I	AGGCCT	1 cut(s)	804
Eco24I	GRGCYC	1 cut(s)	209
Eco31I	GGTCTC	1 cut(s)	395
Eco32I	GATATC	1 cut(s)	193
Eco47I	GGWCC	1 cut(s)	248
Eco88I	CYCGRG	2 cut(s)	29, 330
EcoRII	CCWGG	1 cut(s)	1030
EcoRV	GATATC	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	342
EcoT38I	GRGCYC	1 cut(s)	209
ErhI	CCWWGG	1 cut(s)	342
FaeI	CATG	8 cut(s)	227, 272, 346, 362, 409, 509, 941, 1019
FatI	CATG	8 cut(s)	223, 268, 342, 358, 405, 505, 937, 1015
FauI	CCCGC	1 cut(s)	116
FauNDI	CATATG	1 cut(s)	594
Fnu4HI	GCNGC	3 cut(s)	105, 153, 513
FokI	GGATG	1 cut(s)	1033
FriOI	GRGCYC	1 cut(s)	209
Fsp4HI	GCNGC	3 cut(s)	105, 153, 513
FspBI	CTAG	1 cut(s)	531
GluI	GCNGC	3 cut(s)	105, 153, 513
GsaI	CCCAGC	3 cut(s)	125, 543, 1054
HaeIII	GGCC	4 cut(s)	477, 804, 1011, 1045
HapII	CCGG	2 cut(s)	203, 251
HgaI	GACGC	1 cut(s)	628
Hin1II	CATG	8 cut(s)	227, 272, 346, 362, 409, 509, 941, 1019
HpaII	CCGG	2 cut(s)	203, 251
Hpy188I	TCNGA	6 cut(s)	132, 211, 432, 811, 882, 926
Hpy188III	TCNNGA	1 cut(s)	29
Hpy99I	CGWCG	2 cut(s)	215, 1044
HpyAV	CCTTC	5 cut(s)	109, 160, 319, 357, 794
HpyCH4III	ACNGT	3 cut(s)	482, 661, 1004
HpyCH4V	TGCA	7 cut(s)	411, 461, 505, 515, 598, 898, 971
HpyF10VI	GCNNNNNNNGC	5 cut(s)	104, 117, 305, 521, 1051
HpyF3I	CTNAG	2 cut(s)	129, 283
Hsp92II	CATG	8 cut(s)	227, 272, 346, 362, 409, 509, 941, 1019
Kzo9I	GATC	2 cut(s)	115, 388
LmnI	GCTCC	2 cut(s)	212, 846
Lsp1109I	GCAGC	2 cut(s)	139, 499
LweI	GCATC	1 cut(s)	980
MaeI	CTAG	1 cut(s)	531
MaeIII	GTNAC	1 cut(s)	998
MalI	GATC	2 cut(s)	117, 390
MboI	GATC	2 cut(s)	115, 388
MboII	GAAGA	3 cut(s)	197, 779, 962
MfeI	CAATTG	2 cut(s)	462, 885
MhlI	GDGCHC	2 cut(s)	209, 760
MlsI	TGGCCA	1 cut(s)	477
MluCI	AATT	5 cut(s)	462, 815, 885, 965, 985
MluNI	TGGCCA	1 cut(s)	477
MlyI	GAGTC	3 cut(s)	698, 756, 861
MmeI	TCCRAC	1 cut(s)	234
Mox20I	TGGCCA	1 cut(s)	477
MroXI	GAANNNNTTC	2 cut(s)	743, 816
MscI	TGGCCA	1 cut(s)	477
MseI	TTAA	1 cut(s)	719
MslI	CAYNNNNRTG	1 cut(s)	273
Msp20I	TGGCCA	1 cut(s)	477
MspI	CCGG	2 cut(s)	203, 251
MspR9I	CCNGG	2 cut(s)	204, 1032
MunI	CAATTG	2 cut(s)	462, 885
Mva1269I	GAATGC	1 cut(s)	524
MvaI	CCWGG	1 cut(s)	1032
MwoI	GCNNNNNNNGC	5 cut(s)	104, 117, 305, 521, 1051
NciI	CCSGG	1 cut(s)	204
NcoI	CCATGG	1 cut(s)	342
NdeI	CATATG	1 cut(s)	594
NdeII	GATC	2 cut(s)	115, 388
NlaIII	CATG	8 cut(s)	227, 272, 346, 362, 409, 509, 941, 1019
NlaIV	GGNNCC	2 cut(s)	208, 249
NspI	RCATGY	2 cut(s)	509, 941
PaeI	GCATGC	1 cut(s)	941
PaeR7I	CTCGAG	1 cut(s)	330
PceI	AGGCCT	1 cut(s)	804
PctI	GAATGC	1 cut(s)	524
PdmI	GAANNNNTTC	2 cut(s)	743, 816
PfeI	GAWTC	7 cut(s)	5, 44, 449, 589, 653, 731, 1027
PflFI	GACNNNGTC	1 cut(s)	1038
PflMI	CCANNNNNTGG	2 cut(s)	484, 916
PfoI	TCCNGGA	1 cut(s)	1030
PkrI	GCNGC	3 cut(s)	106, 154, 514
Ple19I	CGATCG	1 cut(s)	118
PleI	GAGTC	3 cut(s)	697, 756, 861
PpsI	GAGTC	3 cut(s)	697, 756, 861
Psp6I	CCWGG	1 cut(s)	1030
PspFI	CCCAGC	3 cut(s)	121, 539, 1050
PspGI	CCWGG	1 cut(s)	1030
PspN4I	GGNNCC	2 cut(s)	208, 249
PspPI	GGNCC	2 cut(s)	248, 1010
PspXI	VCTCGAGB	1 cut(s)	330
PstNI	CAGNNNCTG	3 cut(s)	374, 500, 710
PsyI	GACNNNGTC	1 cut(s)	1038
PvuI	CGATCG	1 cut(s)	118
RsaI	GTAC	2 cut(s)	708, 957
RsaNI	GTAC	2 cut(s)	707, 956
RseI	CAYNNNNRTG	1 cut(s)	273
SaqAI	TTAA	1 cut(s)	719
SatI	GCNGC	3 cut(s)	105, 153, 513
Sau3AI	GATC	2 cut(s)	115, 388
Sau96I	GGNCC	2 cut(s)	248, 1010
SchI	GAGTC	3 cut(s)	698, 756, 861
ScrFI	CCNGG	2 cut(s)	204, 1032
SduI	GDGCHC	2 cut(s)	209, 760
SfaNI	GCATC	1 cut(s)	980
Sfr274I	CTCGAG	1 cut(s)	330
SinI	GGWCC	1 cut(s)	248
SlaI	CTCGAG	1 cut(s)	330
SmiMI	CAYNNNNRTG	1 cut(s)	273
SmlI	CTYRAG	2 cut(s)	330, 349
SmoI	CTYRAG	2 cut(s)	330, 349
SphI	GCATGC	1 cut(s)	941
Sse9I	AATT	5 cut(s)	462, 815, 885, 965, 985
SseBI	AGGCCT	1 cut(s)	804
SsiI	CCGC	3 cut(s)	96, 105, 109
SspI	AATATT	1 cut(s)	782
SspMI	CTAG	1 cut(s)	531
StuI	AGGCCT	1 cut(s)	804
StyD4I	CCNGG	2 cut(s)	202, 1030
StyI	CCWWGG	1 cut(s)	342
TaaI	ACNGT	3 cut(s)	482, 661, 1004
TaqI	TCGA	5 cut(s)	177, 331, 656, 765, 870
TasI	AATT	5 cut(s)	462, 815, 885, 965, 985
TauI	GCSGC	1 cut(s)	107
TfiI	GAWTC	7 cut(s)	5, 44, 449, 589, 653, 731, 1027
Tru1I	TTAA	1 cut(s)	719
Tru9I	TTAA	1 cut(s)	719
TseI	GCWGC	2 cut(s)	152, 512
TspDTI	ATGAA	9 cut(s)	212, 282, 573, 581, 736, 813, 813, 978, 979
Tth111I	GACNNNGTC	1 cut(s)	1038
Van91I	CCANNNNNTGG	2 cut(s)	484, 916
VpaK11BI	GGWCC	1 cut(s)	248
XapI	RAATTY	3 cut(s)	815, 965, 985
XceI	RCATGY	2 cut(s)	509, 941
XhoI	CTCGAG	1 cut(s)	330
XmnI	GAANNNNTTC	2 cut(s)	743, 816
XspI	CTAG	1 cut(s)	531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.