Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0012939

Physical Location & Seq

Genomic Coordinates Forward (+)

44485037 .. 44491580

Gene Structure 6544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G544300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGATACTTCAAACCTCACTTCGCTTCCAGAGGACACTCTCGAAGACAATGAACAACGAGCACCACAGCAACCCCGACCTCTCTCGGCCTTTGCCTCCCGCCCTGATCGCCCTCCCACTCAGACTTCTTCACAAAAATACTCGGCTTTAGATTGGAAGGGGTTTTTCGACCAAGAAGAAGATATTAGAATTCCGGACTCGGATGATGTTTTTCATGTATACACTGCAGGAACAGAGGGCCCAGTTGTTTTCTGTCTGCATGGAGGTGGTTACTCAGGGCTCTCTTTTGCCTTGTCAGCAAGTAAAATTAAGGAGAAAGCTCGGGTAGTTGCTATGGACTTGAGAGGACATGGAAAGTCAACCACAGAAAATGAGACTGATCTTTCTATTGAGACTATGTGCAATGATGTTCTGGCTGTTGTGAAAGCAATTTATGGAGATTCACCTCCTGCAATTGTGCTTGTCGGCCACAGTATGGGAGGGTCAGTTGCTGTGCATGTTGCTGCAAAGAGAGCATTGTGTAGCTTGGCTGGGCTGGTTGTTGTCGATGTTGTAGAGGGAACAGCTTTGGCTTCATTGATTCACATGCAGAAAATCCTGTCAAGCAGGGTGCACCATTTTTCAAGCATTGAAAAAGCGATTGAATGGAGTGTAAGGGGAGGCTCTTTGAGAAACATTGACTCTGCTCGGGTGTCAGTACCTACGACATTAAAGTATGATGATTCAAAGAAATGTTACATTTACAGAGCACGATTGGAAGAAACAGAACAATATTGGAAAAGCTGGTATGAAGGTCTTTCAGAAAAGTTTTTGTCATGTCCCGTTCCAAAGCTCCTGCTGTTAGCTGGAACAGACCGACTGGACAGAGCTCTGACAATTGGTCAAATGCAAGGCAAGTTCCAAATGGTTGTTGTAAGGCATACTGGCCATGCCATACAAGAAGATGTACCCGATGAATTCGCGACACTAGTAACTAATTTTATATCTCGTAACCGCATCGGCCCTCGCGGAGTTGAGATTCCAGGACTCCGTCGGCCATCCCAGACCAACCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0006464 GO:0006482 GO:0006807 GO:0008150 GO:0008152 GO:0008214 GO:0009987 GO:0010921 GO:0016787 GO:0016788 GO:0019208 GO:0019220 GO:0019222 GO:0019538 GO:0019888 GO:0019899 GO:0019902 GO:0019903 GO:0030234 GO:0031323 GO:0031399 GO:0032268 GO:0035303 GO:0035304 GO:0036211 GO:0043170 GO:0043412 GO:0043666 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051336 GO:0051721 GO:0051722 GO:0051723 GO:0052689 GO:0060255 GO:0065007 GO:0065009 GO:0070988 GO:0071704 GO:0080090 GO:0098772 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_6

Protein Analysis

352

Amino Acids

38.61

Weight (kDa)

6.22

Isoelectric Point (pI)

39.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012939)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10050 AT4G10050
fragaria_vesca	FvH4_5g33360 FvH4_5g33360
malus_domestica	MD08G1213000.v1.1 MD15G1395500.v1.1
prunus_persica	Prupe.1G544300_v2.0.a1 Prupe.1G544300_v2.0.a1 Prupe.1G544300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0232091
rosa_laevigata	RLG00000001392
rosa_multiflora	Rmu_sc0000616.1_g000007 Rmu_sc0004618.1_g000006
rosa_roxburghii	Rroxscaffold_3G00228820
rosa_rugosa	Rorug07G0269000
rosa_samantha	Rh7BG397600 Rh7CG443900
rosa_wichuraiana	Rw7G035030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	475
AccI	GTMKAC	1 cut(s)	219
AccII	CGCG	2 cut(s)	962, 1008
AccIII	TCCGGA	1 cut(s)	193
AciI	CCGC	3 cut(s)	100, 994, 1008
AcoI	YGGCCR	3 cut(s)	466, 925, 1034
AcsI	RAATTY	2 cut(s)	189, 956
AfaI	GTAC	2 cut(s)	699, 948
AfiI	CCNNNNNNNGG	1 cut(s)	475
AgsI	TTSAA	5 cut(s)	12, 624, 632, 644, 726
AhdI	GACNNNNNGTC	1 cut(s)	879
AhlI	ACTAGT	1 cut(s)	967
AjnI	CCWGG	1 cut(s)	1021
AluBI	AGCT	7 cut(s)	320, 525, 566, 783, 832, 845, 869
AluI	AGCT	7 cut(s)	320, 525, 566, 783, 832, 845, 869
Alw21I	GWGCWC	4 cut(s)	64, 615, 751, 871
Alw26I	GTCTC	2 cut(s)	368, 386
Alw44I	GTGCAC	1 cut(s)	611
AlwNI	CAGNNNCTG	1 cut(s)	491
Ama87I	CYCGRG	2 cut(s)	321, 687
Aor13HI	TCCGGA	1 cut(s)	193
AoxI	GGCC	6 cut(s)	87, 238, 466, 925, 1000, 1034
ApaI	GGGCCC	1 cut(s)	242
ApaLI	GTGCAC	1 cut(s)	611
ApeKI	GCWGC	1 cut(s)	503
ApoI	RAATTY	2 cut(s)	189, 956
AspS9I	GGNCC	3 cut(s)	238, 239, 1001
AsuHPI	GGTGA	1 cut(s)	435
AvaI	CYCGRG	2 cut(s)	321, 687
BaeGI	GKGCMC	2 cut(s)	242, 615
BalI	TGGCCA	1 cut(s)	927
BanII	GRGCYC	3 cut(s)	242, 282, 871
BbsI	GAAGAC	1 cut(s)	51
Bbv12I	GWGCWC	4 cut(s)	64, 615, 751, 871
BbvI	GCAGC	1 cut(s)	490
BccI	CCATC	1 cut(s)	1045
BciT130I	CCWGG	1 cut(s)	1023
BcoDI	GTCTC	2 cut(s)	368, 386
BcuI	ACTAGT	1 cut(s)	967
BfaI	CTAG	1 cut(s)	968
BfmI	CTRYAG	1 cut(s)	225
BisI	GCNGC	1 cut(s)	504
BlsI	GCNGC	1 cut(s)	505
Bme1390I	CCNGG	1 cut(s)	1023
BmeRI	GACNNNNNGTC	1 cut(s)	879
BmeT110I	CYCGRG	2 cut(s)	321, 687
BmgT120I	GGNCC	3 cut(s)	238, 239, 1001
BmiI	GGNNCC	1 cut(s)	240
BmrFI	CCNGG	1 cut(s)	1023
BmrI	ACTGGG	1 cut(s)	236
BmsI	GCATC	1 cut(s)	1005
BmuI	ACTGGG	1 cut(s)	236
BpiI	GAAGAC	1 cut(s)	51
BpuEI	CTTGAG	1 cut(s)	361
BsaWI	WCCGGW	1 cut(s)	193
BsaXI	ACNNNNNCTCC	2 cut(s)	471, 501
Bsc4I	CCNNNNNNNGG	1 cut(s)	475
Bse1I	ACTGG	3 cut(s)	242, 864, 928
Bse3DI	GCAATG	1 cut(s)	409
BseAI	TCCGGA	1 cut(s)	193
BseBI	CCWGG	1 cut(s)	1023
BseGI	GGATG	2 cut(s)	208, 1037
BseLI	CCNNNNNNNGG	1 cut(s)	475
BseMI	GCAATG	1 cut(s)	409
BseMII	CTCAG	2 cut(s)	134, 288
BseNI	ACTGG	3 cut(s)	242, 864, 928
BseSI	GKGCMC	2 cut(s)	242, 615
BseXI	GCAGC	1 cut(s)	490
BseYI	CCCAGC	1 cut(s)	530
Bsh1236I	CGCG	2 cut(s)	962, 1008
BshFI	GGCC	6 cut(s)	89, 240, 468, 927, 1002, 1036
BsiHKAI	GWGCWC	4 cut(s)	64, 615, 751, 871
BsiHKCI	CYCGRG	2 cut(s)	321, 687
BsiSI	CCGG	1 cut(s)	194
BslFI	GGGAC	1 cut(s)	804
BslI	CCNNNNNNNGG	1 cut(s)	475
BsmAI	GTCTC	2 cut(s)	368, 386
BsmFI	GGGAC	1 cut(s)	804
BsnI	GGCC	6 cut(s)	89, 240, 468, 927, 1002, 1036
BsoBI	CYCGRG	2 cut(s)	321, 687
Bsp120I	GGGCCC	1 cut(s)	238
Bsp1286I	GDGCHC	6 cut(s)	64, 242, 282, 615, 751, 871
Bsp13I	TCCGGA	1 cut(s)	193
Bsp143I	GATC	2 cut(s)	106, 379
Bsp68I	TCGCGA	1 cut(s)	962
BspACI	CCGC	3 cut(s)	100, 994, 1008
BspANI	GGCC	6 cut(s)	89, 240, 468, 927, 1002, 1036
BspCNI	CTCAG	2 cut(s)	133, 287
BspEI	TCCGGA	1 cut(s)	193
BspFNI	CGCG	2 cut(s)	962, 1008
BspLI	GGNNCC	1 cut(s)	240
BspMAI	CTGCAG	1 cut(s)	229
BsrDI	GCAATG	1 cut(s)	409
BsrI	ACTGG	3 cut(s)	242, 864, 928
BssMI	GATC	2 cut(s)	106, 379
BssNAI	GTATAC	1 cut(s)	220
Bst1107I	GTATAC	1 cut(s)	220
Bst2UI	CCWGG	1 cut(s)	1023
Bst4CI	ACNGT	1 cut(s)	473
BstDEI	CTNAG	2 cut(s)	120, 274
BstF5I	GGATG	2 cut(s)	208, 1037
BstFNI	CGCG	2 cut(s)	962, 1008
BstKTI	GATC	2 cut(s)	109, 382
BstMAI	GTCTC	2 cut(s)	368, 386
BstMBI	GATC	2 cut(s)	106, 379
BstMWI	GCNNNNNNNGC	3 cut(s)	108, 296, 512
BstNI	CCWGG	1 cut(s)	1023
BstNSI	RCATGY	2 cut(s)	500, 589
BstSCI	CCNGG	1 cut(s)	1021
BstSFI	CTRYAG	1 cut(s)	225
BstSLI	GKGCMC	2 cut(s)	242, 615
BstUI	CGCG	2 cut(s)	962, 1008
BstV1I	GCAGC	1 cut(s)	490
BstV2I	GAAGAC	1 cut(s)	51
BstZ17I	GTATAC	1 cut(s)	220
BsuRI	GGCC	6 cut(s)	89, 240, 468, 927, 1002, 1036
BtsCI	GGATG	2 cut(s)	208, 1037
BtsI	GCAGTG	1 cut(s)	222
BtsIMutI	CAGTG	1 cut(s)	222
BtuMI	TCGCGA	1 cut(s)	962
CaiI	CAGNNNCTG	1 cut(s)	491
Cfr13I	GGNCC	3 cut(s)	238, 239, 1001
Csp6I	GTAC	2 cut(s)	698, 947
CviAII	CATG	7 cut(s)	215, 260, 350, 497, 586, 816, 929
CviQI	GTAC	2 cut(s)	698, 947
DdeI	CTNAG	2 cut(s)	120, 274
DpnI	GATC	2 cut(s)	108, 381
DpnII	GATC	2 cut(s)	106, 379
DriI	GACNNNNNGTC	1 cut(s)	879
EaeI	YGGCCR	3 cut(s)	466, 925, 1034
Eam1105I	GACNNNNNGTC	1 cut(s)	879
Ecl136II	GAGCTC	1 cut(s)	869
Eco24I	GRGCYC	3 cut(s)	242, 282, 871
Eco53kI	GAGCTC	1 cut(s)	869
Eco88I	CYCGRG	2 cut(s)	321, 687
EcoICRI	GAGCTC	1 cut(s)	869
EcoO109I	RGGNCCY	1 cut(s)	238
EcoRI	GAATTC	2 cut(s)	189, 956
EcoRII	CCWGG	1 cut(s)	1021
EcoT38I	GRGCYC	3 cut(s)	242, 282, 871
FaeI	CATG	7 cut(s)	218, 263, 353, 500, 589, 819, 932
FaqI	GGGAC	1 cut(s)	804
FatI	CATG	7 cut(s)	214, 259, 349, 496, 585, 815, 928
FauI	CCCGC	1 cut(s)	107
FblI	GTMKAC	1 cut(s)	219
Fnu4HI	GCNGC	1 cut(s)	504
FokI	GGATG	2 cut(s)	215, 1024
FriOI	GRGCYC	3 cut(s)	242, 282, 871
Fsp4HI	GCNGC	1 cut(s)	504
FspBI	CTAG	1 cut(s)	968
GluI	GCNGC	1 cut(s)	504
GsaI	CCCAGC	1 cut(s)	534
HaeIII	GGCC	6 cut(s)	89, 240, 468, 927, 1002, 1036
HapII	CCGG	1 cut(s)	194
Hin1II	CATG	7 cut(s)	218, 263, 353, 500, 589, 819, 932
HincII	GTYRAC	1 cut(s)	360
HindII	GTYRAC	1 cut(s)	360
HinfI	GANTC	7 cut(s)	197, 440, 580, 680, 722, 1018, 1026
HpaII	CCGG	1 cut(s)	194
HphI	GGTGA	1 cut(s)	435
Hpy166II	GTNNAC	3 cut(s)	220, 360, 613
Hpy188I	TCNGA	4 cut(s)	123, 202, 802, 873
Hpy188III	TCNNGA	4 cut(s)	29, 41, 194, 961
Hpy8I	GTNNAC	3 cut(s)	220, 360, 613
Hpy99I	CGWCG	1 cut(s)	1035
HpyAV	CCTTC	2 cut(s)	151, 785
HpyCH4III	ACNGT	1 cut(s)	473
HpyCH4V	TGCA	9 cut(s)	227, 259, 402, 452, 496, 506, 589, 613, 889
HpyF10VI	GCNNNNNNNGC	3 cut(s)	108, 296, 512
HpyF3I	CTNAG	2 cut(s)	120, 274
Hsp92II	CATG	7 cut(s)	218, 263, 353, 500, 589, 819, 932
Kpn2I	TCCGGA	1 cut(s)	193
Kzo9I	GATC	2 cut(s)	106, 379
LmnI	GCTCC	1 cut(s)	837
Lsp1109I	GCAGC	1 cut(s)	490
LweI	GCATC	1 cut(s)	1005
MaeI	CTAG	1 cut(s)	968
MaeIII	GTNAC	4 cut(s)	269, 734, 970, 989
MalI	GATC	2 cut(s)	108, 381
MboI	GATC	2 cut(s)	106, 379
MboII	GAAGA	6 cut(s)	56, 120, 188, 191, 770, 953
MfeI	CAATTG	2 cut(s)	453, 876
MhlI	GDGCHC	6 cut(s)	64, 242, 282, 615, 751, 871
MlsI	TGGCCA	1 cut(s)	927
MluCI	AATT	7 cut(s)	189, 306, 429, 453, 876, 956, 976
MluNI	TGGCCA	1 cut(s)	927
MlyI	GAGTC	3 cut(s)	191, 674, 1020
Mox20I	TGGCCA	1 cut(s)	927
MroI	TCCGGA	1 cut(s)	193
MscI	TGGCCA	1 cut(s)	927
MseI	TTAA	2 cut(s)	309, 710
MslI	CAYNNNNRTG	1 cut(s)	264
Msp20I	TGGCCA	1 cut(s)	927
MspI	CCGG	1 cut(s)	194
MspR9I	CCNGG	1 cut(s)	1023
MunI	CAATTG	2 cut(s)	453, 876
MvaI	CCWGG	1 cut(s)	1023
MvnI	CGCG	2 cut(s)	962, 1008
MwoI	GCNNNNNNNGC	3 cut(s)	108, 296, 512
NdeII	GATC	2 cut(s)	106, 379
NlaIII	CATG	7 cut(s)	218, 263, 353, 500, 589, 819, 932
NlaIV	GGNNCC	1 cut(s)	240
NmeAIII	GCCGAG	2 cut(s)	65, 122
NruI	TCGCGA	1 cut(s)	962
NspI	RCATGY	2 cut(s)	500, 589
PfeI	GAWTC	4 cut(s)	440, 580, 722, 1018
PflFI	GACNNNGTC	1 cut(s)	1029
PflMI	CCANNNNNTGG	1 cut(s)	475
PfoI	TCCNGGA	1 cut(s)	1021
PkrI	GCNGC	1 cut(s)	505
PleI	GAGTC	3 cut(s)	191, 674, 1020
PpsI	GAGTC	3 cut(s)	191, 674, 1020
Psp124BI	GAGCTC	1 cut(s)	871
Psp6I	CCWGG	1 cut(s)	1021
PspFI	CCCAGC	1 cut(s)	530
PspGI	CCWGG	1 cut(s)	1021
PspN4I	GGNNCC	1 cut(s)	240
PspOMI	GGGCCC	1 cut(s)	238
PspPI	GGNCC	3 cut(s)	238, 239, 1001
PstI	CTGCAG	1 cut(s)	229
PstNI	CAGNNNCTG	1 cut(s)	491
PsyI	GACNNNGTC	1 cut(s)	1029
RruI	TCGCGA	1 cut(s)	962
RsaI	GTAC	2 cut(s)	699, 948
RsaNI	GTAC	2 cut(s)	698, 947
RseI	CAYNNNNRTG	1 cut(s)	264
SacI	GAGCTC	1 cut(s)	871
SaqAI	TTAA	2 cut(s)	309, 710
SatI	GCNGC	1 cut(s)	504
Sau3AI	GATC	2 cut(s)	106, 379
Sau96I	GGNCC	3 cut(s)	238, 239, 1001
SchI	GAGTC	3 cut(s)	191, 674, 1020
ScrFI	CCNGG	1 cut(s)	1023
SduI	GDGCHC	6 cut(s)	64, 242, 282, 615, 751, 871
SfaNI	GCATC	1 cut(s)	1005
SfcI	CTRYAG	1 cut(s)	225
SmiMI	CAYNNNNRTG	1 cut(s)	264
SmlI	CTYRAG	1 cut(s)	340
SmoI	CTYRAG	1 cut(s)	340
SpeI	ACTAGT	1 cut(s)	967
Sse9I	AATT	7 cut(s)	189, 306, 429, 453, 876, 956, 976
SsiI	CCGC	3 cut(s)	100, 994, 1008
SspI	AATATT	1 cut(s)	773
SspMI	CTAG	1 cut(s)	968
SstI	GAGCTC	1 cut(s)	871
StyD4I	CCNGG	1 cut(s)	1021
TaaI	ACNGT	1 cut(s)	473
TaqI	TCGA	3 cut(s)	42, 168, 546
TaqII	GACCGA	1 cut(s)	870
TasI	AATT	7 cut(s)	189, 306, 429, 453, 876, 956, 976
TfiI	GAWTC	4 cut(s)	440, 580, 722, 1018
Tru1I	TTAA	2 cut(s)	309, 710
Tru9I	TTAA	2 cut(s)	309, 710
TscAI	CASTG	1 cut(s)	229
TseI	GCWGC	1 cut(s)	503
TspDTI	ATGAA	5 cut(s)	66, 203, 564, 804, 969
TspGWI	ACGGA	1 cut(s)	1019
TspRI	CASTG	1 cut(s)	229
Tth111I	GACNNNGTC	1 cut(s)	1029
Van91I	CCANNNNNTGG	1 cut(s)	475
VneI	GTGCAC	1 cut(s)	611
XapI	RAATTY	2 cut(s)	189, 956
XceI	RCATGY	2 cut(s)	500, 589
XmiI	GTMKAC	1 cut(s)	219
XspI	CTAG	1 cut(s)	968

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.