Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0012939

Physical Location & Seq

Genomic Coordinates Reverse (-)

58337926 .. 58343794

Gene Structure 5869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG443900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGATTCTTCAAACCTCACTTCCCTTCCCGAGGACACCCCCGAATCCAATCAACCCCCCCACCACCACCAACAGCCGCCGCCCCAACCCCGTCCTCTCTCCGCCTTCGCCGCCCGCCCCGATCGCCCAGCCACTCAGAGTAGCTCGCAAAAGTTCGCTGCTTTAGATTGGAAGGACTATTTCGACAAAGAAGATGATATCTCCGTTCCGGGCTCCGACGATGTTTTTCATGTATATATGGCAGGAACAGAGGGTCCGGTTGTGTTTTGCCTACATGGAGGTGGCTACTCAGGGCTTTCATTTGCCTTGTCAGCAAGGCAAATCAAGGAGAAGGCTCGAGTAGTTGCCATGGACTTGAGAGGACATGGAAGGTCGACGAATGAAAATGAGACTGATCTTTCTATTGAGACCATGTGCAATGATGTTGAGGCTGTTCTGAAAGCAATGTATGGAGATTCGCCTCCTGCAATTGTGCTTGTTGGCCACAGTATGGGAGGGTCGGTAGCTGTGCATGTTGCTGCAAGAAAAGCATTCCCTAGCTTGGCTGGGCTGGTTGTTGTAGATGTTGTTGAGGGAACAGCAATGGCTTCGTTGATTCATATGCAAAAAATCCTATCAGGCAGGACGCATCATTTTTCAAGCATTGAAAAAGCGATAGAATCGACTGTAAAGGGAGGCTCTTTGAGAAACATTGAGTCTGCTCGTGTATCAGTACCTGCCACATTAAAGTATGATGATTCAAAGAAATGTTACATTTACAGAGCACGACTTGAAGAAACAGAACAATATTGGAAAAGCTGGTATGAAGGCCTTTCTGAAAAATTTCTTTCATCTCCTGTTCCAAAGCTCCTGCTTTTAGCTGGAACAGACCGACTCGACAGAACTCTGACAATTGGTCAAATGCAAGGCAAGTTCCAAATGGTGGTTGTCAGGCATACTGGGCATGCCATACAAGAAGATGTACCTGATGAATTTGCAACACTAATAATAAATTTCATATCTCGTAACCGTATAGGCCCACATGGAGTTGAGATTCCAGGACTTCGTCGGCCATCCCAGCCCAAACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0006464 GO:0006482 GO:0006807 GO:0008150 GO:0008152 GO:0008214 GO:0009987 GO:0010921 GO:0016787 GO:0016788 GO:0019208 GO:0019220 GO:0019222 GO:0019538 GO:0019888 GO:0019899 GO:0019902 GO:0019903 GO:0030234 GO:0031323 GO:0031399 GO:0032268 GO:0035303 GO:0035304 GO:0036211 GO:0043170 GO:0043412 GO:0043666 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051336 GO:0051721 GO:0051722 GO:0051723 GO:0052689 GO:0060255 GO:0065007 GO:0065009 GO:0070988 GO:0071704 GO:0080090 GO:0098772 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_6

Protein Analysis

356

Amino Acids

39.07

Weight (kDa)

6.4

Isoelectric Point (pI)

50.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	86 - 320	1.7e-19	alpha/beta hydrolase fold
Hydrolase_4	PF12146	87 - 186	3.1e-13	Serine aminopeptidase, S33
Abhydrolase_6	PF12697	88 - 327	3.2e-26	Alpha/beta hydrolase family
Thioesterase	PF00975	88 - 175	2.6e-07	Thioesterase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012939)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10050 AT4G10050
fragaria_vesca	FvH4_5g33360 FvH4_5g33360
malus_domestica	MD08G1213000.v1.1 MD15G1395500.v1.1
prunus_persica	Prupe.1G544300_v2.0.a1 Prupe.1G544300_v2.0.a1 Prupe.1G544300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0232091
rosa_laevigata	RLG00000001392
rosa_multiflora	Rmu_sc0000616.1_g000007 Rmu_sc0004618.1_g000006
rosa_roxburghii	Rroxscaffold_3G00228820
rosa_rugosa	Rorug07G0269000
rosa_samantha	Rh7BG397600 Rh7CG443900
rosa_wichuraiana	Rw7G035030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	724
AccB7I	CCANNNNNTGG	2 cut(s)	490, 922
AccI	GTMKAC	1 cut(s)	374
AciI	CCGC	5 cut(s)	77, 80, 102, 111, 115
AcoI	YGGCCR	2 cut(s)	481, 1049
AcsI	RAATTY	3 cut(s)	821, 971, 991
AfaI	GTAC	2 cut(s)	714, 963
AfiI	CCNNNNNNNGG	4 cut(s)	31, 490, 541, 922
AgsI	TTSAA	5 cut(s)	12, 639, 647, 741, 773
AhdI	GACNNNNNGTC	1 cut(s)	894
AjnI	CCWGG	1 cut(s)	1036
AloI	GAACNNNNNNTCC	2 cut(s)	238, 270
AluBI	AGCT	6 cut(s)	144, 506, 540, 798, 847, 860
AluI	AGCT	6 cut(s)	144, 506, 540, 798, 847, 860
Alw21I	GWGCWC	1 cut(s)	766
Alw26I	GTCTC	2 cut(s)	383, 401
AlwNI	CAGNNNCTG	1 cut(s)	716
Ama87I	CYCGRG	2 cut(s)	29, 336
AoxI	GGCC	4 cut(s)	481, 808, 1015, 1049
ApeKI	GCWGC	2 cut(s)	158, 518
ApoI	RAATTY	3 cut(s)	821, 971, 991
Asp700I	GAANNNNTTC	1 cut(s)	822
AspS9I	GGNCC	2 cut(s)	254, 1016
AsuC2I	CCSGG	1 cut(s)	210
AvaI	CYCGRG	2 cut(s)	29, 336
AvaII	GGWCC	1 cut(s)	254
BalI	TGGCCA	1 cut(s)	483
BanII	GRGCYC	1 cut(s)	215
BauI	CACGAG	1 cut(s)	702
Bbv12I	GWGCWC	1 cut(s)	766
BbvI	GCAGC	2 cut(s)	145, 505
BccI	CCATC	1 cut(s)	1060
BcgI	CGANNNNNNTGC	2 cut(s)	570, 604
BciT130I	CCWGG	1 cut(s)	1038
BcnI	CCSGG	1 cut(s)	210
BcoDI	GTCTC	2 cut(s)	383, 401
BfaI	CTAG	1 cut(s)	537
BfuAI	ACCTGC	1 cut(s)	724
BisI	GCNGC	5 cut(s)	77, 80, 111, 159, 519
BlsI	GCNGC	5 cut(s)	78, 81, 112, 160, 520
Bme1390I	CCNGG	2 cut(s)	210, 1038
Bme18I	GGWCC	1 cut(s)	254
BmeRI	GACNNNNNGTC	1 cut(s)	894
BmeT110I	CYCGRG	2 cut(s)	29, 336
BmgT120I	GGNCC	2 cut(s)	254, 1016
BmiI	GGNNCC	2 cut(s)	214, 255
BmrFI	CCNGG	2 cut(s)	210, 1038
BmrI	ACTGGG	1 cut(s)	948
BmsI	GCATC	1 cut(s)	637
BmuI	ACTGGG	1 cut(s)	948
BpuEI	CTTGAG	1 cut(s)	376
BpuMI	CCSGG	1 cut(s)	210
BsaI	GGTCTC	1 cut(s)	401
BsaJI	CCNNGG	2 cut(s)	30, 348
BsaWI	WCCGGW	1 cut(s)	256
BsaXI	ACNNNNNCTCC	2 cut(s)	486, 516
Bsc4I	CCNNNNNNNGG	4 cut(s)	31, 490, 541, 922
Bse1I	ACTGG	1 cut(s)	943
Bse3DI	GCAATG	3 cut(s)	424, 450, 588
BseBI	CCWGG	1 cut(s)	1038
BseDI	CCNNGG	2 cut(s)	30, 348
BseGI	GGATG	1 cut(s)	1052
BseLI	CCNNNNNNNGG	4 cut(s)	31, 490, 541, 922
BseMI	GCAATG	3 cut(s)	424, 450, 588
BseMII	CTCAG	2 cut(s)	149, 303
BseNI	ACTGG	1 cut(s)	943
BseXI	GCAGC	2 cut(s)	145, 505
BseYI	CCCAGC	3 cut(s)	127, 545, 1056
Bsh1285I	CGRYCG	1 cut(s)	124
BshFI	GGCC	4 cut(s)	483, 810, 1017, 1051
BsiEI	CGRYCG	1 cut(s)	124
BsiHKAI	GWGCWC	1 cut(s)	766
BsiHKCI	CYCGRG	2 cut(s)	29, 336
BsiSI	CCGG	2 cut(s)	209, 257
BslI	CCNNNNNNNGG	4 cut(s)	31, 490, 541, 922
BsmAI	GTCTC	2 cut(s)	383, 401
BsmI	GAATGC	1 cut(s)	530
BsnI	GGCC	4 cut(s)	483, 810, 1017, 1051
Bso31I	GGTCTC	1 cut(s)	401
BsoBI	CYCGRG	2 cut(s)	29, 336
Bsp1286I	GDGCHC	2 cut(s)	215, 766
Bsp143I	GATC	2 cut(s)	121, 394
Bsp19I	CCATGG	1 cut(s)	348
BspACI	CCGC	5 cut(s)	77, 80, 102, 111, 115
BspANI	GGCC	4 cut(s)	483, 810, 1017, 1051
BspCNI	CTCAG	2 cut(s)	148, 302
BspLI	GGNNCC	2 cut(s)	214, 255
BspMI	ACCTGC	1 cut(s)	724
BspTNI	GGTCTC	1 cut(s)	401
BsrDI	GCAATG	3 cut(s)	424, 450, 588
BsrI	ACTGG	1 cut(s)	943
BssECI	CCNNGG	2 cut(s)	30, 348
BssMI	GATC	2 cut(s)	121, 394
BssSI	CACGAG	1 cut(s)	702
BssT1I	CCWWGG	1 cut(s)	348
Bst2BI	CACGAG	1 cut(s)	702
Bst2UI	CCWGG	1 cut(s)	1038
Bst4CI	ACNGT	3 cut(s)	488, 667, 1010
BstC8I	GCNNGC	3 cut(s)	115, 146, 945
BstDEI	CTNAG	2 cut(s)	135, 289
BstDSI	CCRYGG	1 cut(s)	348
BstENI	CCTNNNNNAGG	1 cut(s)	29
BstF5I	GGATG	1 cut(s)	1052
BstKTI	GATC	2 cut(s)	124, 397
BstMAI	GTCTC	2 cut(s)	383, 401
BstMBI	GATC	2 cut(s)	121, 394
BstMCI	CGRYCG	1 cut(s)	124
BstMWI	GCNNNNNNNGC	6 cut(s)	110, 123, 311, 527, 940, 1057
BstNI	CCWGG	1 cut(s)	1038
BstNSI	RCATGY	2 cut(s)	515, 947
BstSCI	CCNGG	2 cut(s)	208, 1036
BstV1I	GCAGC	2 cut(s)	145, 505
BsuRI	GGCC	4 cut(s)	483, 810, 1017, 1051
BtgI	CCRYGG	1 cut(s)	348
BtsCI	GGATG	1 cut(s)	1052
BveI	ACCTGC	1 cut(s)	724
Cac8I	GCNNGC	3 cut(s)	115, 146, 945
CaiI	CAGNNNCTG	1 cut(s)	716
Cfr13I	GGNCC	2 cut(s)	254, 1016
CseI	GACGC	1 cut(s)	634
Csp6I	GTAC	2 cut(s)	713, 962
CviAII	CATG	8 cut(s)	230, 275, 349, 365, 412, 512, 944, 1022
CviQI	GTAC	2 cut(s)	713, 962
DdeI	CTNAG	2 cut(s)	135, 289
DpnI	GATC	2 cut(s)	123, 396
DpnII	GATC	2 cut(s)	121, 394
DriI	GACNNNNNGTC	1 cut(s)	894
EaeI	YGGCCR	2 cut(s)	481, 1049
Eam1105I	GACNNNNNGTC	1 cut(s)	894
EciI	GGCGGA	1 cut(s)	91
Eco130I	CCWWGG	1 cut(s)	348
Eco147I	AGGCCT	1 cut(s)	810
Eco24I	GRGCYC	1 cut(s)	215
Eco31I	GGTCTC	1 cut(s)	401
Eco32I	GATATC	1 cut(s)	199
Eco47I	GGWCC	1 cut(s)	254
Eco88I	CYCGRG	2 cut(s)	29, 336
EcoNI	CCTNNNNNAGG	1 cut(s)	29
EcoRII	CCWGG	1 cut(s)	1036
EcoRV	GATATC	1 cut(s)	199
EcoT14I	CCWWGG	1 cut(s)	348
EcoT38I	GRGCYC	1 cut(s)	215
ErhI	CCWWGG	1 cut(s)	348
FaeI	CATG	8 cut(s)	233, 278, 352, 368, 415, 515, 947, 1025
FatI	CATG	8 cut(s)	229, 274, 348, 364, 411, 511, 943, 1021
FauI	CCCGC	1 cut(s)	122
FauNDI	CATATG	1 cut(s)	600
FblI	GTMKAC	1 cut(s)	374
Fnu4HI	GCNGC	5 cut(s)	77, 80, 111, 159, 519
FokI	GGATG	1 cut(s)	1039
FriOI	GRGCYC	1 cut(s)	215
Fsp4HI	GCNGC	5 cut(s)	77, 80, 111, 159, 519
FspBI	CTAG	1 cut(s)	537
GluI	GCNGC	5 cut(s)	77, 80, 111, 159, 519
GsaI	CCCAGC	3 cut(s)	131, 549, 1060
HaeIII	GGCC	4 cut(s)	483, 810, 1017, 1051
HapII	CCGG	2 cut(s)	209, 257
HgaI	GACGC	1 cut(s)	634
Hin1II	CATG	8 cut(s)	233, 278, 352, 368, 415, 515, 947, 1025
HincII	GTYRAC	1 cut(s)	375
HindII	GTYRAC	1 cut(s)	375
HinfI	GANTC	9 cut(s)	5, 44, 455, 595, 659, 695, 737, 873, 1033
HpaII	CCGG	2 cut(s)	209, 257
Hpy166II	GTNNAC	1 cut(s)	375
Hpy188I	TCNGA	5 cut(s)	138, 217, 438, 817, 888
Hpy188III	TCNNGA	1 cut(s)	29
Hpy8I	GTNNAC	1 cut(s)	375
Hpy99I	CGWCG	3 cut(s)	221, 379, 1050
HpyAV	CCTTC	6 cut(s)	35, 115, 166, 325, 363, 800
HpyCH4III	ACNGT	3 cut(s)	488, 667, 1010
HpyCH4V	TGCA	7 cut(s)	417, 467, 511, 521, 604, 904, 977
HpyF10VI	GCNNNNNNNGC	6 cut(s)	110, 123, 311, 527, 940, 1057
HpyF3I	CTNAG	2 cut(s)	135, 289
Hsp92II	CATG	8 cut(s)	233, 278, 352, 368, 415, 515, 947, 1025
Kzo9I	GATC	2 cut(s)	121, 394
LmnI	GCTCC	2 cut(s)	218, 852
Lsp1109I	GCAGC	2 cut(s)	145, 505
LweI	GCATC	1 cut(s)	637
MaeI	CTAG	1 cut(s)	537
MaeIII	GTNAC	2 cut(s)	749, 1004
MalI	GATC	2 cut(s)	123, 396
MboI	GATC	2 cut(s)	121, 394
MboII	GAAGA	3 cut(s)	203, 785, 968
MfeI	CAATTG	2 cut(s)	468, 891
MhlI	GDGCHC	2 cut(s)	215, 766
MlsI	TGGCCA	1 cut(s)	483
MluCI	AATT	5 cut(s)	468, 821, 891, 971, 991
MluNI	TGGCCA	1 cut(s)	483
MlyI	GAGTC	2 cut(s)	704, 867
MmeI	TCCRAC	1 cut(s)	240
Mox20I	TGGCCA	1 cut(s)	483
MroXI	GAANNNNTTC	1 cut(s)	822
MscI	TGGCCA	1 cut(s)	483
MseI	TTAA	1 cut(s)	725
MslI	CAYNNNNRTG	1 cut(s)	279
Msp20I	TGGCCA	1 cut(s)	483
MspI	CCGG	2 cut(s)	209, 257
MspR9I	CCNGG	2 cut(s)	210, 1038
MunI	CAATTG	2 cut(s)	468, 891
Mva1269I	GAATGC	1 cut(s)	530
MvaI	CCWGG	1 cut(s)	1038
MwoI	GCNNNNNNNGC	6 cut(s)	110, 123, 311, 527, 940, 1057
NciI	CCSGG	1 cut(s)	210
NcoI	CCATGG	1 cut(s)	348
NdeI	CATATG	1 cut(s)	600
NdeII	GATC	2 cut(s)	121, 394
NlaIII	CATG	8 cut(s)	233, 278, 352, 368, 415, 515, 947, 1025
NlaIV	GGNNCC	2 cut(s)	214, 255
NspI	RCATGY	2 cut(s)	515, 947
PaeI	GCATGC	1 cut(s)	947
PaeR7I	CTCGAG	1 cut(s)	336
PceI	AGGCCT	1 cut(s)	810
PctI	GAATGC	1 cut(s)	530
PdmI	GAANNNNTTC	1 cut(s)	822
PfeI	GAWTC	7 cut(s)	5, 44, 455, 595, 659, 737, 1033
PflFI	GACNNNGTC	1 cut(s)	1044
PflMI	CCANNNNNTGG	2 cut(s)	490, 922
PfoI	TCCNGGA	1 cut(s)	1036
PkrI	GCNGC	5 cut(s)	78, 81, 112, 160, 520
Ple19I	CGATCG	1 cut(s)	124
PleI	GAGTC	2 cut(s)	703, 867
PpsI	GAGTC	2 cut(s)	703, 867
Psp6I	CCWGG	1 cut(s)	1036
PspFI	CCCAGC	3 cut(s)	127, 545, 1056
PspGI	CCWGG	1 cut(s)	1036
PspN4I	GGNNCC	2 cut(s)	214, 255
PspPI	GGNCC	2 cut(s)	254, 1016
PspXI	VCTCGAGB	1 cut(s)	336
PstNI	CAGNNNCTG	1 cut(s)	716
PsyI	GACNNNGTC	1 cut(s)	1044
PvuI	CGATCG	1 cut(s)	124
RsaI	GTAC	2 cut(s)	714, 963
RsaNI	GTAC	2 cut(s)	713, 962
RseI	CAYNNNNRTG	1 cut(s)	279
SalI	GTCGAC	1 cut(s)	373
SaqAI	TTAA	1 cut(s)	725
SatI	GCNGC	5 cut(s)	77, 80, 111, 159, 519
Sau3AI	GATC	2 cut(s)	121, 394
Sau96I	GGNCC	2 cut(s)	254, 1016
SchI	GAGTC	2 cut(s)	704, 867
ScrFI	CCNGG	2 cut(s)	210, 1038
SduI	GDGCHC	2 cut(s)	215, 766
SfaNI	GCATC	1 cut(s)	637
Sfr274I	CTCGAG	1 cut(s)	336
SinI	GGWCC	1 cut(s)	254
SlaI	CTCGAG	1 cut(s)	336
SmiMI	CAYNNNNRTG	1 cut(s)	279
SmlI	CTYRAG	2 cut(s)	336, 355
SmoI	CTYRAG	2 cut(s)	336, 355
SphI	GCATGC	1 cut(s)	947
Sse9I	AATT	5 cut(s)	468, 821, 891, 971, 991
SseBI	AGGCCT	1 cut(s)	810
SsiI	CCGC	5 cut(s)	77, 80, 102, 111, 115
SspI	AATATT	1 cut(s)	788
SspMI	CTAG	1 cut(s)	537
StuI	AGGCCT	1 cut(s)	810
StyD4I	CCNGG	2 cut(s)	208, 1036
StyI	CCWWGG	1 cut(s)	348
TaaI	ACNGT	3 cut(s)	488, 667, 1010
TaqI	TCGA	5 cut(s)	183, 337, 374, 662, 876
TaqII	GACCGA	1 cut(s)	885
TasI	AATT	5 cut(s)	468, 821, 891, 971, 991
TauI	GCSGC	3 cut(s)	79, 82, 113
TfiI	GAWTC	7 cut(s)	5, 44, 455, 595, 659, 737, 1033
Tru1I	TTAA	1 cut(s)	725
Tru9I	TTAA	1 cut(s)	725
TseI	GCWGC	2 cut(s)	158, 518
TspDTI	ATGAA	8 cut(s)	218, 288, 396, 587, 819, 819, 984, 985
TspGWI	ACGGA	1 cut(s)	193
Tth111I	GACNNNGTC	1 cut(s)	1044
Van91I	CCANNNNNTGG	2 cut(s)	490, 922
VpaK11BI	GGWCC	1 cut(s)	254
XagI	CCTNNNNNAGG	1 cut(s)	29
XapI	RAATTY	3 cut(s)	821, 971, 991
XceI	RCATGY	2 cut(s)	515, 947
XhoI	CTCGAG	1 cut(s)	336
XmiI	GTMKAC	1 cut(s)	374
XmnI	GAANNNNTTC	1 cut(s)	822
XspI	CTAG	1 cut(s)	537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.