Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0012939

Physical Location & Seq

Genomic Coordinates Forward (+)

49518910 .. 49524518

Gene Structure 5609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1395500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGATTCATCAAACCTCACCTCGCTTCCGGAGGACCCACTCGAAGACAATCAACAGCAAACTCCACCCCAACCCCGACCTCTCCCTGCCTTTGCCTCACCTCGTCCCGATCGCCCTCCCACTCAGACTAGTTCAGAAAAGTACTCAGCTTTGGATTGGACGGAGTATTTCGACAAAGAGGATGATATCAGCATTCCGGAATCCAATGATATTTTTCATTTATACACGGCAGGAACTGATGGACCAGTTGTATTCTGTCTACATGGAGGTGGTTACTCAGGGCTCTCATTTGCCTTGTCAGCAAGTAAAATTAAGGAGAAAGCTCGGGTAGTTGCCATGGACTTGAGAGGACATGGAAAATCAACCACTGCAAATGATACCGATCTTTCCATTGAGACTATGTGCAATGATGTTCTGGCTGTTGTGACAGCAATGTATGGAGATTCCCCGCCTGCAATTGTGCTTGTTGGCCACAGTATGGGAGGGTCAATTGCTGTACATGTCGCCGCAAAGAAAGCATTATCTAGCTTGGCTGGGCTGGTTGTTGTTGATGTTGTAGAGGGAACAGCTTTGGCTTCGTTGGTTCATATGCAGAAAATCCTATCAAGCCGGGTACAACGTTTTTCAAGCATTGAAAAAGCGATTGAATTGAGTGTGAGGGGAGGTTCTTTAAGAAACATTGAGTCTGCTCGGGTGTCAATACCTTCCACATTAAAGTATGATGATTCAAAGAAATGGTATGAAGGCCTTTCAGAAAAGTTTTTGTCATCACCCGTTCCAAAGGTCCTGCTGTTAGCTGGAACAGACCGACTAGACAGAGCTCTCACAATTGGTCAAATGCAAGGCAAGTTCCAAATGGTTGTCGTCAGACATACCGGGCATGCCATACAAGAAGATGTACCTGATGAATTTGCAACACTAGTAACTAATTTTGTATCTCGTAATCGCATAGGCCCTCGTGGAGTTGAGATTCCAGGACTCCGTCGGCCATCTCAGTCCAAACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0006464 GO:0006482 GO:0006807 GO:0008150 GO:0008152 GO:0008214 GO:0009987 GO:0010921 GO:0016787 GO:0016788 GO:0019208 GO:0019220 GO:0019222 GO:0019538 GO:0019888 GO:0019899 GO:0019902 GO:0019903 GO:0030234 GO:0031323 GO:0031399 GO:0032268 GO:0035303 GO:0035304 GO:0036211 GO:0043170 GO:0043412 GO:0043666 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051336 GO:0051721 GO:0051722 GO:0051723 GO:0052689 GO:0060255 GO:0065007 GO:0065009 GO:0070988 GO:0071704 GO:0080090 GO:0098772 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_6

Protein Analysis

336

Amino Acids

36.24

Weight (kDa)

6.08

Isoelectric Point (pI)

45.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	82 - 185	2e-16	alpha/beta hydrolase fold
Hydrolase_4	PF12146	83 - 183	1.5e-12	Serine aminopeptidase, S33
Abhydrolase_6	PF12697	84 - 306	2e-23	Alpha/beta hydrolase family
Thioesterase	PF00975	84 - 184	1.5e-07	Thioesterase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012939)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10050 AT4G10050
fragaria_vesca	FvH4_5g33360 FvH4_5g33360
malus_domestica	MD08G1213000.v1.1 MD15G1395500.v1.1
prunus_persica	Prupe.1G544300_v2.0.a1 Prupe.1G544300_v2.0.a1 Prupe.1G544300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0232091
rosa_laevigata	RLG00000001392
rosa_multiflora	Rmu_sc0000616.1_g000007 Rmu_sc0004618.1_g000006
rosa_roxburghii	Rroxscaffold_3G00228820
rosa_rugosa	Rorug07G0269000
rosa_samantha	Rh7BG397600 Rh7CG443900
rosa_wichuraiana	Rw7G035030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	478
AccI	GTMKAC	1 cut(s)	259
AccIII	TCCGGA	2 cut(s)	28, 196
AciI	CCGC	2 cut(s)	449, 507
AclI	AACGTT	1 cut(s)	619
AcoI	YGGCCR	2 cut(s)	469, 986
AcsI	RAATTY	1 cut(s)	908
AfaI	GTAC	4 cut(s)	143, 498, 615, 900
AfiI	CCNNNNNNNGG	1 cut(s)	478
AflIII	ACRYGT	1 cut(s)	499
AgsI	TTSAA	4 cut(s)	627, 635, 647, 729
AhlI	ACTAGT	2 cut(s)	128, 919
AjnI	CCWGG	1 cut(s)	973
AluBI	AGCT	6 cut(s)	149, 323, 528, 569, 797, 821
AluI	AGCT	6 cut(s)	149, 323, 528, 569, 797, 821
Alw21I	GWGCWC	1 cut(s)	823
Alw26I	GTCTC	1 cut(s)	389
AlwNI	CAGNNNCTG	1 cut(s)	236
Ama87I	CYCGRG	2 cut(s)	324, 690
Aor13HI	TCCGGA	2 cut(s)	28, 196
AoxI	GGCC	4 cut(s)	469, 745, 952, 986
ApoI	RAATTY	1 cut(s)	908
AspS9I	GGNCC	4 cut(s)	34, 242, 784, 953
AsuC2I	CCSGG	2 cut(s)	611, 877
AsuHPI	GGTGA	3 cut(s)	10, 90, 762
AvaI	CYCGRG	2 cut(s)	324, 690
AvaII	GGWCC	3 cut(s)	34, 242, 784
BalI	TGGCCA	1 cut(s)	471
BanII	GRGCYC	2 cut(s)	285, 823
BauI	CACGAG	1 cut(s)	957
BbsI	GAAGAC	1 cut(s)	51
Bbv12I	GWGCWC	1 cut(s)	823
BccI	CCATC	2 cut(s)	233, 997
BceAI	ACGGC	1 cut(s)	243
BciT130I	CCWGG	1 cut(s)	975
BcnI	CCSGG	2 cut(s)	611, 877
BcoDI	GTCTC	1 cut(s)	389
BcuI	ACTAGT	2 cut(s)	128, 919
BfaI	CTAG	4 cut(s)	129, 525, 812, 920
BisI	GCNGC	1 cut(s)	507
BlsI	GCNGC	1 cut(s)	508
BmcAI	AGTACT	1 cut(s)	143
Bme1390I	CCNGG	3 cut(s)	611, 877, 975
Bme18I	GGWCC	3 cut(s)	34, 242, 784
BmeT110I	CYCGRG	2 cut(s)	324, 690
BmgT120I	GGNCC	4 cut(s)	34, 242, 784, 953
BmiI	GGNNCC	1 cut(s)	36
BmrFI	CCNGG	3 cut(s)	611, 877, 975
BpiI	GAAGAC	1 cut(s)	51
BpuEI	CTTGAG	1 cut(s)	364
BpuMI	CCSGG	2 cut(s)	611, 877
BsaBI	GATNNNNATC	1 cut(s)	381
BsaJI	CCNNGG	1 cut(s)	336
BsaWI	WCCGGW	2 cut(s)	28, 196
Bsc4I	CCNNNNNNNGG	1 cut(s)	478
Bse1I	ACTGG	1 cut(s)	245
Bse3DI	GCAATG	2 cut(s)	412, 438
Bse8I	GATNNNNATC	1 cut(s)	381
BseAI	TCCGGA	2 cut(s)	28, 196
BseBI	CCWGG	1 cut(s)	975
BseDI	CCNNGG	1 cut(s)	336
BseGI	GGATG	1 cut(s)	187
BseJI	GATNNNNATC	1 cut(s)	381
BseLI	CCNNNNNNNGG	1 cut(s)	478
BseMI	GCAATG	2 cut(s)	412, 438
BseMII	CTCAG	4 cut(s)	137, 159, 291, 1007
BseNI	ACTGG	1 cut(s)	245
BseYI	CCCAGC	1 cut(s)	533
Bsh1285I	CGRYCG	1 cut(s)	112
BshFI	GGCC	4 cut(s)	471, 747, 954, 988
BsiEI	CGRYCG	1 cut(s)	112
BsiHKAI	GWGCWC	1 cut(s)	823
BsiHKCI	CYCGRG	2 cut(s)	324, 690
BsiSI	CCGG	4 cut(s)	29, 197, 610, 876
BslFI	GGGAC	1 cut(s)	90
BslI	CCNNNNNNNGG	1 cut(s)	478
BsmAI	GTCTC	1 cut(s)	389
BsmFI	GGGAC	1 cut(s)	90
BsmI	GAATGC	1 cut(s)	192
BsnI	GGCC	4 cut(s)	471, 747, 954, 988
BsoBI	CYCGRG	2 cut(s)	324, 690
Bsp1286I	GDGCHC	2 cut(s)	285, 823
Bsp13I	TCCGGA	2 cut(s)	28, 196
Bsp1407I	TGTACA	1 cut(s)	496
Bsp143I	GATC	2 cut(s)	109, 382
Bsp19I	CCATGG	1 cut(s)	336
BspACI	CCGC	2 cut(s)	449, 507
BspANI	GGCC	4 cut(s)	471, 747, 954, 988
BspCNI	CTCAG	4 cut(s)	136, 158, 290, 1006
BspEI	TCCGGA	2 cut(s)	28, 196
BspLI	GGNNCC	1 cut(s)	36
BsrDI	GCAATG	2 cut(s)	412, 438
BsrGI	TGTACA	1 cut(s)	496
BsrI	ACTGG	1 cut(s)	245
BssECI	CCNNGG	1 cut(s)	336
BssMI	GATC	2 cut(s)	109, 382
BssSI	CACGAG	1 cut(s)	957
BssT1I	CCWWGG	1 cut(s)	336
Bst2BI	CACGAG	1 cut(s)	957
Bst2UI	CCWGG	1 cut(s)	975
Bst4CI	ACNGT	1 cut(s)	476
BstAUI	TGTACA	1 cut(s)	496
BstC8I	GCNNGC	2 cut(s)	453, 882
BstDEI	CTNAG	4 cut(s)	123, 145, 277, 993
BstDSI	CCRYGG	1 cut(s)	336
BstF5I	GGATG	1 cut(s)	187
BstKTI	GATC	2 cut(s)	112, 385
BstMAI	GTCTC	1 cut(s)	389
BstMBI	GATC	2 cut(s)	109, 382
BstMCI	CGRYCG	1 cut(s)	112
BstMWI	GCNNNNNNNGC	2 cut(s)	299, 515
BstNI	CCWGG	1 cut(s)	975
BstNSI	RCATGY	2 cut(s)	503, 884
BstSCI	CCNGG	3 cut(s)	609, 875, 973
BstV2I	GAAGAC	1 cut(s)	51
BsuRI	GGCC	4 cut(s)	471, 747, 954, 988
BtgI	CCRYGG	1 cut(s)	336
BtsCI	GGATG	1 cut(s)	187
BtsI	GCAGTG	1 cut(s)	366
BtsIMutI	CAGTG	1 cut(s)	366
Cac8I	GCNNGC	2 cut(s)	453, 882
CaiI	CAGNNNCTG	1 cut(s)	236
Cfr13I	GGNCC	4 cut(s)	34, 242, 784, 953
Csp6I	GTAC	4 cut(s)	142, 497, 614, 899
CviAII	CATG	5 cut(s)	263, 337, 353, 500, 881
CviQI	GTAC	4 cut(s)	142, 497, 614, 899
DdeI	CTNAG	4 cut(s)	123, 145, 277, 993
DpnI	GATC	2 cut(s)	111, 384
DpnII	GATC	2 cut(s)	109, 382
EaeI	YGGCCR	2 cut(s)	469, 986
Ecl136II	GAGCTC	1 cut(s)	821
Eco130I	CCWWGG	1 cut(s)	336
Eco147I	AGGCCT	1 cut(s)	747
Eco24I	GRGCYC	2 cut(s)	285, 823
Eco32I	GATATC	1 cut(s)	187
Eco47I	GGWCC	3 cut(s)	34, 242, 784
Eco53kI	GAGCTC	1 cut(s)	821
Eco88I	CYCGRG	2 cut(s)	324, 690
EcoICRI	GAGCTC	1 cut(s)	821
EcoO109I	RGGNCCY	3 cut(s)	34, 784, 953
EcoRII	CCWGG	1 cut(s)	973
EcoRV	GATATC	1 cut(s)	187
EcoT14I	CCWWGG	1 cut(s)	336
EcoT38I	GRGCYC	2 cut(s)	285, 823
ErhI	CCWWGG	1 cut(s)	336
FaeI	CATG	5 cut(s)	266, 340, 356, 503, 884
FaqI	GGGAC	1 cut(s)	90
FatI	CATG	5 cut(s)	262, 336, 352, 499, 880
FauI	CCCGC	1 cut(s)	456
FauNDI	CATATG	1 cut(s)	588
FblI	GTMKAC	1 cut(s)	259
Fnu4HI	GCNGC	1 cut(s)	507
FokI	GGATG	1 cut(s)	194
FriOI	GRGCYC	2 cut(s)	285, 823
Fsp4HI	GCNGC	1 cut(s)	507
FspBI	CTAG	4 cut(s)	129, 525, 812, 920
GluI	GCNGC	1 cut(s)	507
GsaI	CCCAGC	1 cut(s)	537
HaeIII	GGCC	4 cut(s)	471, 747, 954, 988
HapII	CCGG	4 cut(s)	29, 197, 610, 876
Hin1II	CATG	5 cut(s)	266, 340, 356, 503, 884
HinfI	GANTC	7 cut(s)	5, 200, 443, 683, 725, 970, 978
HpaII	CCGG	4 cut(s)	29, 197, 610, 876
HphI	GGTGA	3 cut(s)	10, 90, 762
Hpy166II	GTNNAC	1 cut(s)	260
Hpy188I	TCNGA	4 cut(s)	126, 136, 754, 869
Hpy188III	TCNNGA	3 cut(s)	29, 107, 197
Hpy8I	GTNNAC	1 cut(s)	260
Hpy99I	CGWCG	1 cut(s)	987
HpyAV	CCTTC	2 cut(s)	714, 737
HpyCH4III	ACNGT	1 cut(s)	476
HpyCH4IV	ACGT	1 cut(s)	619
HpyCH4V	TGCA	6 cut(s)	371, 405, 455, 592, 841, 914
HpyF10VI	GCNNNNNNNGC	2 cut(s)	299, 515
HpyF3I	CTNAG	4 cut(s)	123, 145, 277, 993
HpySE526I	ACGT	1 cut(s)	619
Hsp92II	CATG	5 cut(s)	266, 340, 356, 503, 884
Kpn2I	TCCGGA	2 cut(s)	28, 196
Kzo9I	GATC	2 cut(s)	109, 382
MaeI	CTAG	4 cut(s)	129, 525, 812, 920
MaeII	ACGT	1 cut(s)	619
MaeIII	GTNAC	3 cut(s)	272, 424, 922
MalI	GATC	2 cut(s)	111, 384
MboI	GATC	2 cut(s)	109, 382
MboII	GAAGA	2 cut(s)	56, 905
MfeI	CAATTG	3 cut(s)	456, 489, 828
MhlI	GDGCHC	2 cut(s)	285, 823
MlsI	TGGCCA	1 cut(s)	471
MluCI	AATT	7 cut(s)	309, 456, 489, 647, 828, 908, 928
MluNI	TGGCCA	1 cut(s)	471
MlyI	GAGTC	2 cut(s)	692, 972
Mox20I	TGGCCA	1 cut(s)	471
MroI	TCCGGA	2 cut(s)	28, 196
MscI	TGGCCA	1 cut(s)	471
MseI	TTAA	3 cut(s)	312, 671, 713
MslI	CAYNNNNRTG	1 cut(s)	267
Msp20I	TGGCCA	1 cut(s)	471
MspI	CCGG	4 cut(s)	29, 197, 610, 876
MspR9I	CCNGG	3 cut(s)	611, 877, 975
MunI	CAATTG	3 cut(s)	456, 489, 828
Mva1269I	GAATGC	1 cut(s)	192
MvaI	CCWGG	1 cut(s)	975
MwoI	GCNNNNNNNGC	2 cut(s)	299, 515
NciI	CCSGG	2 cut(s)	611, 877
NcoI	CCATGG	1 cut(s)	336
NdeI	CATATG	1 cut(s)	588
NdeII	GATC	2 cut(s)	109, 382
NlaIII	CATG	5 cut(s)	266, 340, 356, 503, 884
NlaIV	GGNNCC	1 cut(s)	36
NmuCI	GTSAC	1 cut(s)	424
NspI	RCATGY	2 cut(s)	503, 884
PaeI	GCATGC	1 cut(s)	884
PceI	AGGCCT	1 cut(s)	747
PciI	ACATGT	1 cut(s)	499
PctI	GAATGC	1 cut(s)	192
PfeI	GAWTC	5 cut(s)	5, 200, 443, 725, 970
PflFI	GACNNNGTC	1 cut(s)	981
PflMI	CCANNNNNTGG	1 cut(s)	478
PfoI	TCCNGGA	1 cut(s)	973
PkrI	GCNGC	1 cut(s)	508
Ple19I	CGATCG	1 cut(s)	112
PleI	GAGTC	2 cut(s)	691, 972
PpsI	GAGTC	2 cut(s)	691, 972
PpuMI	RGGWCCY	2 cut(s)	34, 784
PscI	ACATGT	1 cut(s)	499
Psp124BI	GAGCTC	1 cut(s)	823
Psp1406I	AACGTT	1 cut(s)	619
Psp5II	RGGWCCY	2 cut(s)	34, 784
Psp6I	CCWGG	1 cut(s)	973
PspFI	CCCAGC	1 cut(s)	533
PspGI	CCWGG	1 cut(s)	973
PspN4I	GGNNCC	1 cut(s)	36
PspPI	GGNCC	4 cut(s)	34, 242, 784, 953
PspPPI	RGGWCCY	2 cut(s)	34, 784
PstNI	CAGNNNCTG	1 cut(s)	236
PsyI	GACNNNGTC	1 cut(s)	981
PvuI	CGATCG	1 cut(s)	112
RsaI	GTAC	4 cut(s)	143, 498, 615, 900
RsaNI	GTAC	4 cut(s)	142, 497, 614, 899
RseI	CAYNNNNRTG	1 cut(s)	267
SacI	GAGCTC	1 cut(s)	823
SaqAI	TTAA	3 cut(s)	312, 671, 713
SatI	GCNGC	1 cut(s)	507
Sau3AI	GATC	2 cut(s)	109, 382
Sau96I	GGNCC	4 cut(s)	34, 242, 784, 953
ScaI	AGTACT	1 cut(s)	143
SchI	GAGTC	2 cut(s)	692, 972
ScrFI	CCNGG	3 cut(s)	611, 877, 975
SduI	GDGCHC	2 cut(s)	285, 823
SinI	GGWCC	3 cut(s)	34, 242, 784
SmiMI	CAYNNNNRTG	1 cut(s)	267
SmlI	CTYRAG	1 cut(s)	343
SmoI	CTYRAG	1 cut(s)	343
SpeI	ACTAGT	2 cut(s)	128, 919
SphI	GCATGC	1 cut(s)	884
Sse9I	AATT	7 cut(s)	309, 456, 489, 647, 828, 908, 928
SseBI	AGGCCT	1 cut(s)	747
SsiI	CCGC	2 cut(s)	449, 507
SspMI	CTAG	4 cut(s)	129, 525, 812, 920
SstI	GAGCTC	1 cut(s)	823
StuI	AGGCCT	1 cut(s)	747
StyD4I	CCNGG	3 cut(s)	609, 875, 973
StyI	CCWWGG	1 cut(s)	336
TaaI	ACNGT	1 cut(s)	476
TaiI	ACGT	1 cut(s)	622
TaqI	TCGA	2 cut(s)	42, 171
TaqII	GACCGA	1 cut(s)	822
TasI	AATT	7 cut(s)	309, 456, 489, 647, 828, 908, 928
TatI	WGTACW	2 cut(s)	141, 496
TauI	GCSGC	1 cut(s)	509
TfiI	GAWTC	5 cut(s)	5, 200, 443, 725, 970
Tru1I	TTAA	3 cut(s)	312, 671, 713
Tru9I	TTAA	3 cut(s)	312, 671, 713
TscAI	CASTG	1 cut(s)	373
TseFI	GTSAC	1 cut(s)	424
Tsp45I	GTSAC	1 cut(s)	424
TspDTI	ATGAA	4 cut(s)	206, 575, 756, 921
TspGWI	ACGGA	2 cut(s)	176, 971
TspRI	CASTG	1 cut(s)	373
Tth111I	GACNNNGTC	1 cut(s)	981
Van91I	CCANNNNNTGG	1 cut(s)	478
VpaK11BI	GGWCC	3 cut(s)	34, 242, 784
XapI	RAATTY	1 cut(s)	908
XceI	RCATGY	2 cut(s)	503, 884
XmiI	GTMKAC	1 cut(s)	259
XspI	CTAG	4 cut(s)	129, 525, 812, 920
ZrmI	AGTACT	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.