Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0012939

Physical Location & Seq

Genomic Coordinates Reverse (-)

24105405 .. 24111012

Gene Structure 5608 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g33360.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGATTCTTCTTCAAACCTCACTCCGCTTCCTGAAGACGCACCCGAATCCAACCTACCACCACCCCAACCCCGCCCTCTCTCCGCCTTCGCCGCCCGCCCCGATCGCCCCGCTACTCAGAGTAGCTCCCAGAAGTTCGCCGCTTTAGATTGGAAGCCCTATTTCGACACAGAAGACGACATCTCCATTCCGGGCTCCGACGACGTGTTTCATGTGTATATGGCAGGAACCGAGGGTCCGGTTGTCTTTTGCCTTCATGGAGGTGGCTACTCTGGGCTTTCATTTGCCTTGTCAGCAAGTCAAATCAAGGAGAAGGCTCGAGTAGTTGCCATGGACTTGAGAGGACATGGAAAGACGATGACAGAAAATGAGACTGATCTATCTATCGAGACCATGTGCAATGATGTTCAGGCTGTTCTGAAAGCAATGTATGGAGATTCGCCTCCTGCAATTGTGCTTGTTGGACACAGTATGGGAGGATCAGTTGCTGTGCATGTTGCAGCAAAAAAAGCACTGCCTAGCTTGGCTGGGCTGGTTGTTGTAGATGTTGTAGAGGGAACAGCTATGGCTTCGTTGATACATATGCAAAAAATTCTATCAGGCCGAACACATCATTTTTCAAGCATTGAAAAAGCGATAGAATCGACTGTAAAGGGAGGCTCCTTAAGAAACATTGAGTCTGCCCGTGTATCAGTACCTACCACATTAAAGTATGATGATTCAAAGAAATGTTACATTTACAAAGCACGACTCGAGGAAACAGAACAATATTGGAAAAGCTGGTATGAAGGCCTTTCTGAAAAGTTTCTATCATCTCCTGTTCCAAAGCTCCTGCTTTTAGCTGGAACAGACCGACTTGACAGAACTCTGACAATTGGTCAAATGCAAGGCAAGTTCCAAATGGTTGTTGTCAGACATACTGGGCATGCCATACAAGAAGATGTACCTGATGAATTTGCATCACTAATAATAAATTTCATATCTCGTAACCGTATAGGCCCACATGGAGTTGAGATTCCAGGACTTCGTCGGCCATCCCAGCCCACACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0006464 GO:0006482 GO:0006807 GO:0008150 GO:0008152 GO:0008214 GO:0009987 GO:0010921 GO:0016787 GO:0016788 GO:0019208 GO:0019220 GO:0019222 GO:0019538 GO:0019888 GO:0019899 GO:0019902 GO:0019903 GO:0030234 GO:0031323 GO:0031399 GO:0032268 GO:0035303 GO:0035304 GO:0036211 GO:0043170 GO:0043412 GO:0043666 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051336 GO:0051721 GO:0051722 GO:0051723 GO:0052689 GO:0060255 GO:0065007 GO:0065009 GO:0070988 GO:0071704 GO:0080090 GO:0098772 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_6

Protein Analysis

351

Amino Acids

38.06

Weight (kDa)

6.13

Isoelectric Point (pI)

50.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	1 - 72	1.2e-09	alpha/beta hydrolase fold
Hydrolase_4	PF12146	1 - 71	4.8e-09	Serine aminopeptidase, S33
Abhydrolase_6	PF12697	1 - 79	6.9e-09	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012939)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10050 AT4G10050
fragaria_vesca	FvH4_5g33360 FvH4_5g33360
malus_domestica	MD08G1213000.v1.1 MD15G1395500.v1.1
prunus_persica	Prupe.1G544300_v2.0.a1 Prupe.1G544300_v2.0.a1 Prupe.1G544300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0232091
rosa_laevigata	RLG00000001392
rosa_multiflora	Rmu_sc0000616.1_g000007 Rmu_sc0004618.1_g000006
rosa_roxburghii	Rroxscaffold_3G00228820
rosa_rugosa	Rorug07G0269000
rosa_samantha	Rh7BG397600 Rh7CG443900
rosa_wichuraiana	Rw7G035030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	26, 73, 84, 93, 97, 111, 141
AclWI	GGATC	1 cut(s)	487
AcoI	YGGCCR	1 cut(s)	1031
AcsI	RAATTY	3 cut(s)	591, 953, 973
AcuI	CTGAAG	1 cut(s)	54
AfaI	GTAC	2 cut(s)	696, 945
AflII	CTTAAG	1 cut(s)	664
AflIII	ACRYGT	1 cut(s)	204
AgsI	TTSAA	4 cut(s)	15, 621, 629, 723
AhdI	GACNNNNNGTC	1 cut(s)	876
AjiI	CACGTC	1 cut(s)	205
AjnI	CCWGG	1 cut(s)	1018
AloI	GAACNNNNNNTCC	2 cut(s)	220, 252
AluBI	AGCT	6 cut(s)	126, 522, 563, 780, 829, 842
AluI	AGCT	6 cut(s)	126, 522, 563, 780, 829, 842
Alw26I	GTCTC	2 cut(s)	365, 383
AlwI	GGATC	1 cut(s)	487
AlwNI	CAGNNNCTG	1 cut(s)	488
Ama87I	CYCGRG	2 cut(s)	318, 752
AoxI	GGCC	4 cut(s)	601, 790, 997, 1031
ApeKI	GCWGC	1 cut(s)	500
ApoI	RAATTY	3 cut(s)	591, 953, 973
Asp700I	GAANNNNTTC	1 cut(s)	804
AspS9I	GGNCC	2 cut(s)	236, 998
AsuC2I	CCSGG	1 cut(s)	192
AvaI	CYCGRG	2 cut(s)	318, 752
AvaII	GGWCC	1 cut(s)	236
BanII	GRGCYC	1 cut(s)	197
BbsI	GAAGAC	2 cut(s)	42, 180
BbvI	GCAGC	1 cut(s)	512
BccI	CCATC	1 cut(s)	1042
BciT130I	CCWGG	1 cut(s)	1020
BcnI	CCSGG	1 cut(s)	192
BcoDI	GTCTC	2 cut(s)	365, 383
BfaI	CTAG	1 cut(s)	519
BfrI	CTTAAG	1 cut(s)	664
BisI	GCNGC	3 cut(s)	93, 141, 501
BlsI	GCNGC	3 cut(s)	94, 142, 502
Bme1390I	CCNGG	2 cut(s)	192, 1020
Bme18I	GGWCC	1 cut(s)	236
BmeRI	GACNNNNNGTC	1 cut(s)	876
BmeT110I	CYCGRG	2 cut(s)	318, 752
BmgBI	CACGTC	1 cut(s)	205
BmgT120I	GGNCC	2 cut(s)	236, 998
BmiI	GGNNCC	4 cut(s)	196, 229, 237, 661
BmrFI	CCNGG	2 cut(s)	192, 1020
BmrI	ACTGGG	1 cut(s)	930
BmsI	GCATC	1 cut(s)	968
BmuI	ACTGGG	1 cut(s)	930
BpiI	GAAGAC	2 cut(s)	42, 180
BpuEI	CTTGAG	1 cut(s)	358
BpuMI	CCSGG	1 cut(s)	192
BsaI	GGTCTC	1 cut(s)	383
BsaJI	CCNNGG	2 cut(s)	231, 330
BsaWI	WCCGGW	1 cut(s)	238
BsaXI	ACNNNNNCTCC	4 cut(s)	167, 197, 468, 498
Bse1I	ACTGG	1 cut(s)	925
Bse3DI	GCAATG	2 cut(s)	406, 432
BseBI	CCWGG	1 cut(s)	1020
BseDI	CCNNGG	2 cut(s)	231, 330
BseGI	GGATG	1 cut(s)	1034
BseMI	GCAATG	2 cut(s)	406, 432
BseMII	CTCAG	1 cut(s)	131
BseNI	ACTGG	1 cut(s)	925
BseXI	GCAGC	1 cut(s)	512
BseYI	CCCAGC	2 cut(s)	527, 1038
Bsh1285I	CGRYCG	1 cut(s)	106
BshFI	GGCC	4 cut(s)	603, 792, 999, 1033
BsiEI	CGRYCG	1 cut(s)	106
BsiHKCI	CYCGRG	2 cut(s)	318, 752
BsiSI	CCGG	2 cut(s)	191, 239
BsmAI	GTCTC	2 cut(s)	365, 383
BsnI	GGCC	4 cut(s)	603, 792, 999, 1033
Bso31I	GGTCTC	1 cut(s)	383
BsoBI	CYCGRG	2 cut(s)	318, 752
Bsp1286I	GDGCHC	1 cut(s)	197
Bsp143I	GATC	3 cut(s)	103, 376, 479
Bsp19I	CCATGG	1 cut(s)	330
BspACI	CCGC	7 cut(s)	26, 73, 84, 93, 97, 111, 141
BspANI	GGCC	4 cut(s)	603, 792, 999, 1033
BspCNI	CTCAG	1 cut(s)	130
BspLI	GGNNCC	4 cut(s)	196, 229, 237, 661
BspPI	GGATC	1 cut(s)	487
BspTI	CTTAAG	1 cut(s)	664
BspTNI	GGTCTC	1 cut(s)	383
BsrDI	GCAATG	2 cut(s)	406, 432
BsrI	ACTGG	1 cut(s)	925
BssECI	CCNNGG	2 cut(s)	231, 330
BssMI	GATC	3 cut(s)	103, 376, 479
BssT1I	CCWWGG	1 cut(s)	330
Bst2UI	CCWGG	1 cut(s)	1020
Bst4CI	ACNGT	3 cut(s)	470, 649, 992
BstAFI	CTTAAG	1 cut(s)	664
BstC8I	GCNNGC	2 cut(s)	97, 927
BstDEI	CTNAG	1 cut(s)	117
BstDSI	CCRYGG	1 cut(s)	330
BstF5I	GGATG	1 cut(s)	1034
BstKTI	GATC	3 cut(s)	106, 379, 482
BstMAI	GTCTC	2 cut(s)	365, 383
BstMBI	GATC	3 cut(s)	103, 376, 479
BstMCI	CGRYCG	1 cut(s)	106
BstMWI	GCNNNNNNNGC	5 cut(s)	92, 105, 293, 509, 1039
BstNI	CCWGG	1 cut(s)	1020
BstNSI	RCATGY	2 cut(s)	497, 929
BstSCI	CCNGG	2 cut(s)	190, 1018
BstV1I	GCAGC	1 cut(s)	512
BstV2I	GAAGAC	2 cut(s)	42, 180
BsuRI	GGCC	4 cut(s)	603, 792, 999, 1033
BtgI	CCRYGG	1 cut(s)	330
BtrI	CACGTC	1 cut(s)	205
BtsCI	GGATG	1 cut(s)	1034
BtsI	GCAGTG	1 cut(s)	512
BtsIMutI	CAGTG	1 cut(s)	512
Cac8I	GCNNGC	2 cut(s)	97, 927
CaiI	CAGNNNCTG	1 cut(s)	488
Cfr13I	GGNCC	2 cut(s)	236, 998
CseI	GACGC	1 cut(s)	47
Csp6I	GTAC	2 cut(s)	695, 944
CviAII	CATG	8 cut(s)	212, 257, 331, 347, 394, 494, 926, 1004
CviQI	GTAC	2 cut(s)	695, 944
DdeI	CTNAG	1 cut(s)	117
DpnI	GATC	3 cut(s)	105, 378, 481
DpnII	GATC	3 cut(s)	103, 376, 479
DriI	GACNNNNNGTC	1 cut(s)	876
EaeI	YGGCCR	1 cut(s)	1031
Eam1105I	GACNNNNNGTC	1 cut(s)	876
EciI	GGCGGA	1 cut(s)	73
Eco130I	CCWWGG	1 cut(s)	330
Eco147I	AGGCCT	1 cut(s)	792
Eco24I	GRGCYC	1 cut(s)	197
Eco31I	GGTCTC	1 cut(s)	383
Eco47I	GGWCC	1 cut(s)	236
Eco57I	CTGAAG	1 cut(s)	54
Eco88I	CYCGRG	2 cut(s)	318, 752
EcoRII	CCWGG	1 cut(s)	1018
EcoT14I	CCWWGG	1 cut(s)	330
EcoT38I	GRGCYC	1 cut(s)	197
ErhI	CCWWGG	1 cut(s)	330
FaeI	CATG	8 cut(s)	215, 260, 334, 350, 397, 497, 929, 1007
FatI	CATG	8 cut(s)	211, 256, 330, 346, 393, 493, 925, 1003
FauI	CCCGC	3 cut(s)	80, 104, 118
FauNDI	CATATG	1 cut(s)	582
Fnu4HI	GCNGC	3 cut(s)	93, 141, 501
FokI	GGATG	1 cut(s)	1021
FriOI	GRGCYC	1 cut(s)	197
Fsp4HI	GCNGC	3 cut(s)	93, 141, 501
FspBI	CTAG	1 cut(s)	519
GluI	GCNGC	3 cut(s)	93, 141, 501
GsaI	CCCAGC	2 cut(s)	531, 1042
HaeIII	GGCC	4 cut(s)	603, 792, 999, 1033
HapII	CCGG	2 cut(s)	191, 239
HgaI	GACGC	1 cut(s)	47
Hin1II	CATG	8 cut(s)	215, 260, 334, 350, 397, 497, 929, 1007
HinfI	GANTC	8 cut(s)	5, 47, 437, 641, 677, 719, 750, 1015
HpaII	CCGG	2 cut(s)	191, 239
Hpy188I	TCNGA	6 cut(s)	120, 199, 420, 799, 870, 914
Hpy188III	TCNNGA	2 cut(s)	32, 388
Hpy99I	CGWCG	3 cut(s)	203, 206, 1032
HpyAV	CCTTC	4 cut(s)	97, 263, 307, 782
HpyCH4III	ACNGT	3 cut(s)	470, 649, 992
HpyCH4IV	ACGT	1 cut(s)	204
HpyCH4V	TGCA	7 cut(s)	399, 449, 493, 500, 586, 886, 959
HpyF10VI	GCNNNNNNNGC	5 cut(s)	92, 105, 293, 509, 1039
HpyF3I	CTNAG	1 cut(s)	117
HpySE526I	ACGT	1 cut(s)	204
Hsp92II	CATG	8 cut(s)	215, 260, 334, 350, 397, 497, 929, 1007
Kzo9I	GATC	3 cut(s)	103, 376, 479
LmnI	GCTCC	4 cut(s)	131, 200, 665, 834
Lsp1109I	GCAGC	1 cut(s)	512
LweI	GCATC	1 cut(s)	968
MaeI	CTAG	1 cut(s)	519
MaeII	ACGT	1 cut(s)	204
MaeIII	GTNAC	2 cut(s)	731, 986
MalI	GATC	3 cut(s)	105, 378, 481
MboI	GATC	3 cut(s)	103, 376, 479
MboII	GAAGA	4 cut(s)	3, 47, 185, 950
MfeI	CAATTG	2 cut(s)	450, 873
MhlI	GDGCHC	1 cut(s)	197
MluCI	AATT	5 cut(s)	450, 591, 873, 953, 973
MlyI	GAGTC	2 cut(s)	686, 744
MmeI	TCCRAC	3 cut(s)	75, 222, 442
MroXI	GAANNNNTTC	1 cut(s)	804
MseI	TTAA	2 cut(s)	665, 707
MslI	CAYNNNNRTG	1 cut(s)	261
MspCI	CTTAAG	1 cut(s)	664
MspI	CCGG	2 cut(s)	191, 239
MspR9I	CCNGG	2 cut(s)	192, 1020
MunI	CAATTG	2 cut(s)	450, 873
MvaI	CCWGG	1 cut(s)	1020
MwoI	GCNNNNNNNGC	5 cut(s)	92, 105, 293, 509, 1039
NciI	CCSGG	1 cut(s)	192
NcoI	CCATGG	1 cut(s)	330
NdeI	CATATG	1 cut(s)	582
NdeII	GATC	3 cut(s)	103, 376, 479
NlaIII	CATG	8 cut(s)	215, 260, 334, 350, 397, 497, 929, 1007
NlaIV	GGNNCC	4 cut(s)	196, 229, 237, 661
NspI	RCATGY	2 cut(s)	497, 929
PaeI	GCATGC	1 cut(s)	929
PaeR7I	CTCGAG	2 cut(s)	318, 752
PceI	AGGCCT	1 cut(s)	792
PdmI	GAANNNNTTC	1 cut(s)	804
PfeI	GAWTC	6 cut(s)	5, 47, 437, 641, 719, 1015
PflFI	GACNNNGTC	1 cut(s)	1026
PfoI	TCCNGGA	1 cut(s)	1018
PkrI	GCNGC	3 cut(s)	94, 142, 502
Ple19I	CGATCG	1 cut(s)	106
PleI	GAGTC	2 cut(s)	685, 744
PpsI	GAGTC	2 cut(s)	685, 744
Psp6I	CCWGG	1 cut(s)	1018
PspFI	CCCAGC	2 cut(s)	527, 1038
PspGI	CCWGG	1 cut(s)	1018
PspN4I	GGNNCC	4 cut(s)	196, 229, 237, 661
PspPI	GGNCC	2 cut(s)	236, 998
PspXI	VCTCGAGB	2 cut(s)	318, 752
PstNI	CAGNNNCTG	1 cut(s)	488
PsyI	GACNNNGTC	1 cut(s)	1026
PvuI	CGATCG	1 cut(s)	106
RsaI	GTAC	2 cut(s)	696, 945
RsaNI	GTAC	2 cut(s)	695, 944
RseI	CAYNNNNRTG	1 cut(s)	261
SaqAI	TTAA	2 cut(s)	665, 707
SatI	GCNGC	3 cut(s)	93, 141, 501
Sau3AI	GATC	3 cut(s)	103, 376, 479
Sau96I	GGNCC	2 cut(s)	236, 998
SchI	GAGTC	2 cut(s)	686, 744
ScrFI	CCNGG	2 cut(s)	192, 1020
SduI	GDGCHC	1 cut(s)	197
SfaNI	GCATC	1 cut(s)	968
Sfr274I	CTCGAG	2 cut(s)	318, 752
SinI	GGWCC	1 cut(s)	236
SlaI	CTCGAG	2 cut(s)	318, 752
SmiMI	CAYNNNNRTG	1 cut(s)	261
SmlI	CTYRAG	4 cut(s)	318, 337, 664, 752
SmoI	CTYRAG	4 cut(s)	318, 337, 664, 752
SphI	GCATGC	1 cut(s)	929
Sse9I	AATT	5 cut(s)	450, 591, 873, 953, 973
SseBI	AGGCCT	1 cut(s)	792
SsiI	CCGC	7 cut(s)	26, 73, 84, 93, 97, 111, 141
SspI	AATATT	1 cut(s)	770
SspMI	CTAG	1 cut(s)	519
StuI	AGGCCT	1 cut(s)	792
StyD4I	CCNGG	2 cut(s)	190, 1018
StyI	CCWWGG	1 cut(s)	330
TaaI	ACNGT	3 cut(s)	470, 649, 992
TaiI	ACGT	1 cut(s)	207
TaqI	TCGA	5 cut(s)	165, 319, 387, 644, 753
TaqII	GACCGA	1 cut(s)	867
TasI	AATT	5 cut(s)	450, 591, 873, 953, 973
TauI	GCSGC	2 cut(s)	95, 143
TfiI	GAWTC	6 cut(s)	5, 47, 437, 641, 719, 1015
Tru1I	TTAA	2 cut(s)	665, 707
Tru9I	TTAA	2 cut(s)	665, 707
TscAI	CASTG	1 cut(s)	519
TseI	GCWGC	1 cut(s)	500
TspDTI	ATGAA	6 cut(s)	200, 245, 270, 801, 966, 967
TspRI	CASTG	1 cut(s)	519
Tth111I	GACNNNGTC	1 cut(s)	1026
Vha464I	CTTAAG	1 cut(s)	664
VpaK11BI	GGWCC	1 cut(s)	236
XapI	RAATTY	3 cut(s)	591, 953, 973
XceI	RCATGY	2 cut(s)	497, 929
XhoI	CTCGAG	2 cut(s)	318, 752
XmnI	GAANNNNTTC	1 cut(s)	804
XspI	CTAG	1 cut(s)	519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.