Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0012939

Physical Location & Seq

Genomic Coordinates Reverse (-)

25366118 .. 25371496

Gene Structure 5379 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0269000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2646 bp

ATGGCGCACGTTAGCCAACTGCCGTGCGACGGCGACGGCGTATGCATGCTCTGCAAGGCGAAGCCGTCCGACGAGGAGAAGCTGACCTGCAAGACCTGCGTCACGCCGTGGCACGCCGCCTGCCTCGCTCCCTGCTCGCGCCCCGAAACCCTGGCCTCGACGGCGCAGTGGGAGTGCCCGGACTGTACCTCGATCTCCGGCGGGGCTCCGGCGGTGAAGTCCGGCGAGTCCGGGGACTTGATAGCCAAGATCCAGGCGATAATGGCGGACGAGTCGCTGACGGAGGAGGAGAAGGCGAAGAAGCGACAGGAGCTGATGAGCGGAAAGGCGGAGGAGGAGGAGGAGGAGGAAAAGAAAGGAGCGAAGAAGGACGTGTTGGATGTTCTGGATGGGATTTTCAACTGCTCCTTCTGTATGCAGCTGCCGGAGAGACCTGTCACGACACCATGCGGCCACAATTTCTGCCTGAAGTGCTTCCAGAAATGGGTTGGGCAACGAAAGCATACTTGTGCAAAGTGCCGTGCTCCAATTCCTCAAAAGATGGCAAGTCAACCCCGAATCAACTCTTCCCTTGTAATTGCCATACGTATGGCTAAGCTTTCAAAATCACATGTTACTGGGGCGGCTGCCAAGGTATATCATTACATACAAAACCAAGACAGGCCTGACAAAGCATACACTACTGAGCGAGCACAAAAGACTGGAAAAGCTAATGCTGCAAGTGGCAAGATATTTGTTACAATTCCTTCAGATCATTTTGGACCTATACCTGCTGAAAATGATCCCGAGAGAAATCAAGGTGTCATGGTTGGGGAATGTTGGGAGGATAGGCTGGAATGTCGACAATGGGGTGCACATTTTCCCCATGTTTCTGGTATAGCTGGACAGTCTAACCATGGCGCACAGTCTGTTGTGCTTTCAGGAGGGTACCTTGATGATGAGGATCATGGGGAATGGTTCTTATACACAGGAAGTGGCGGAAGAGATTTGAGTGGGAACAAGCGAACTAATAAGGACCAGTCCTTTGACCAGACTTTTGAAAAGTATAACAAGGCGCTCCAAGTTAGTTGCCAGAAAGGCTATCCTGTAAGGGTGGTAAGATCGCACAAGGAGAAGCGCTCCGCATATGCCCCTGAGAAAGGGTTGCGGTATGATGGAGTTTATAGAATTGAGAAGTGTTGGAGAAAGGTGGGAGTCCAGGGGTTTAAGGTCTGCCGGTATCTTTTTGTCAGATGTGACAACGAACCTGCACCATGGACAAGTGATGAACATGGAGATCGGCCTAGACCACTACCAGCAATACCTGAGCTGGCAAAAGCCACAAACATAACAGAGAGGAATGCAAGTCCATCATGGGACTTTGAGGAGAAAGATGGCCGCTGGAAATGGATAAAGGAACCACCTATCAGCAAAAAACCTGTTCAAACATTAGATCCTGCTGATCGAAAGAGGTCAAGGAAAGCAATGAGGAGAGCACAGAACATGACTGTACGGGAGAGGCTCTTGAAAGAATTTAGCTGCCTTATTTGTCGCCAGGTGATGACATCACCCGTTACCACATCATGTGGTCATAATTTCTGCAAGTCATGTTTTCAAGGTGCTTTTGCGGGTAAGAGTGTGGTGACAGAAAGAAACAGAGGTGGAAGATCCCTTCGAACTCAAAGGAATGTACTGACCTGCCCTTCCTGTCCCACCGATGTCACTGATTTTGTTCAAAATCCCCAGGTGAACACAGAGATAATGAAAGCAATTGAGTCACTGAAAGAAGAGGAAGCAAATGTAGAATCAGCTGATGAATCAAGTGAAGAAATGGACATTCCTGACAATGAAAATAGCACAGAAATGCCAGAAGAAGCAGCTGTGGTAGATGGTGAGCAGACTTCTCCAACAAAATGCAACCCCAAAGGCAGTCCCAAACGACTGAAAGTTGATACTGGTAATGACTCGCCAAAGAGTGATATTGTGGAGGTAAATGAAATTTCTGCTGTCCAGACTAATGGTGTCAATGGAGATACTGAGATGGAAATTGCCAAGGAAAGCAATGAGGTACAGGCTCCAGTTGCGAAACGAGGGAAAAAAACTGCTGGTCAAGCTGGCCAAGGTGTTGGAGCAAAGACCAGGGGAACAAAGAAGGCTAAGGATGCTGTGAGTGAAGAGAACGGCTCACCATCAAGTAATGAAGTTTCTGCTGTCCACACTGATGATGTCAATGGAGATTCTGATTTAGATATAGCTAAGGAGACCAATTCTGAGATGGAAGTTGCCAAGGAAAGTAATGAGGTACAGGCTCCAGTTGCGAAACGTGGGAAGAAAAATGCTGGTCAAGCTGGCCAAGGTGTTGGAGCAAAGACCAGGGGAAGGAAGAAGGTTAAGGAAGCTGTGAGTGAAGATAACGGCTCACCATCAAGTAATGAAGTTTCTGCTATCCAGACTAATGGTGTTAATGGAGATTCTGATTTAGATATAGCCAAGGAGAGCAATGAGTTACAGGCTCCAGTGGCAAAACGTGGGAACAAAGCTGCTGCTGGTCTAGCTGTTGAAGGTGTTGGATCAAGGACCAGGGGAAGGAAGAAGGCTAAGGTAGCAGCGAGTGAAGAGAATGGTTCACCATCTAGTCCTCTCCATGTGGATGTGGATTTTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0006464 GO:0006482 GO:0006807 GO:0008150 GO:0008152 GO:0008214 GO:0009987 GO:0010921 GO:0016787 GO:0016788 GO:0019208 GO:0019220 GO:0019222 GO:0019538 GO:0019888 GO:0019899 GO:0019902 GO:0019903 GO:0030234 GO:0031323 GO:0031399 GO:0032268 GO:0035303 GO:0035304 GO:0036211 GO:0043170 GO:0043412 GO:0043666 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051336 GO:0051721 GO:0051722 GO:0051723 GO:0052689 GO:0060255 GO:0065007 GO:0065009 GO:0070988 GO:0071704 GO:0080090 GO:0098772 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_6

Protein Analysis

881

Amino Acids

96.05

Weight (kDa)

7.63

Isoelectric Point (pI)

48.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	134 - 178	4e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	134 - 174	5.3e-06	Ring finger domain
zf-C3HC4	PF00097	135 - 173	2.8e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_4	PF15227	135 - 173	3.4e-06	zinc finger of C3HC4-type, RING
SAD_SRA	PF02182	265 - 414	5.5e-50	SAD/SRA domain
zf-RING_UBOX	PF13445	507 - 531	1.7e-08	RING-type zinc-finger
zf-C3HC4_2	PF13923	507 - 533	3.4e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012939)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10050 AT4G10050
fragaria_vesca	FvH4_5g33360 FvH4_5g33360
malus_domestica	MD08G1213000.v1.1 MD15G1395500.v1.1
prunus_persica	Prupe.1G544300_v2.0.a1 Prupe.1G544300_v2.0.a1 Prupe.1G544300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0232091
rosa_laevigata	RLG00000001392
rosa_multiflora	Rmu_sc0000616.1_g000007 Rmu_sc0004618.1_g000006
rosa_roxburghii	Rroxscaffold_3G00228820
rosa_rugosa	Rorug07G0269000
rosa_samantha	Rh7BG397600 Rh7CG443900
rosa_wichuraiana	Rw7G035030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	5 cut(s)	95, 104, 778, 1255, 1685
Acc65I	GGTACC	1 cut(s)	927
AccB1I	GGYRCC	1 cut(s)	927
AccBSI	CCGCTC	1 cut(s)	321
AccI	GTMKAC	1 cut(s)	841
AccII	CGCG	1 cut(s)	139
AclWI	GGATC	6 cut(s)	244, 776, 951, 1427, 1641, 2557
AcoI	YGGCCR	4 cut(s)	451, 1375, 2095, 2329
AcsI	RAATTY	2 cut(s)	1511, 1977
AcuI	CTGAAG	2 cut(s)	488, 732
AdeI	CACNNNGTG	1 cut(s)	108
AfaI	GTAC	6 cut(s)	187, 929, 1491, 1671, 2049, 2283
AfeI	AGCGCT	1 cut(s)	1118
AfiI	CCNNNNNNNGG	5 cut(s)	29, 484, 1139, 2358, 2565
AflIII	ACRYGT	2 cut(s)	372, 610
AgsI	TTSAA	8 cut(s)	400, 603, 1040, 1424, 1507, 1595, 1715, 2540
AjiI	CACGTC	1 cut(s)	373
AjnI	CCWGG	8 cut(s)	150, 252, 1197, 1533, 1722, 2117, 2351, 2558
AjuI	GAANNNNNNNTTGG	2 cut(s)	359, 391
Alw21I	GWGCWC	4 cut(s)	526, 694, 856, 1477
Alw26I	GTCTC	2 cut(s)	424, 2234
Alw44I	GTGCAC	1 cut(s)	852
AlwI	GGATC	6 cut(s)	244, 776, 951, 1427, 1641, 2557
AlwNI	CAGNNNCTG	1 cut(s)	313
Ama87I	CYCGRG	1 cut(s)	785
Aor51HI	AGCGCT	1 cut(s)	1118
AoxI	GGCC	7 cut(s)	153, 451, 662, 1280, 1375, 2095, 2329
ApaLI	GTGCAC	1 cut(s)	852
ApeKI	GCWGC	9 cut(s)	418, 421, 626, 716, 1518, 1856, 2519, 2522, 2585
ApoI	RAATTY	2 cut(s)	1511, 1977
ArsI	GACNNNNNNTTYG	4 cut(s)	1007, 1019, 1039, 1051
Asp700I	GAANNNNTTC	1 cut(s)	473
Asp718I	GGTACC	1 cut(s)	927
AspLEI	GCGC	6 cut(s)	7, 141, 166, 902, 1057, 1119
AspS9I	GGNCC	3 cut(s)	761, 1015, 2556
AsuC2I	CCSGG	2 cut(s)	179, 232
AsuHPI	GGTGA	9 cut(s)	226, 1539, 1549, 1633, 1738, 1883, 2157, 2391, 2598
AsuII	TTCGAA	1 cut(s)	1654
AvaI	CYCGRG	1 cut(s)	785
AvaII	GGWCC	3 cut(s)	761, 1015, 2556
BaeGI	GKGCMC	2 cut(s)	179, 856
BalI	TGGCCA	2 cut(s)	2097, 2331
BanI	GGYRCC	1 cut(s)	927
BanII	GRGCYC	1 cut(s)	208
Bbv12I	GWGCWC	4 cut(s)	526, 694, 856, 1477
BbvI	GCAGC	9 cut(s)	408, 430, 613, 703, 1505, 1868, 2506, 2509, 2597
BceAI	ACGGC	9 cut(s)	7, 46, 49, 52, 91, 177, 504, 2176, 2410
BciT130I	CCWGG	8 cut(s)	152, 254, 1199, 1535, 1724, 2119, 2353, 2560
BcnI	CCSGG	2 cut(s)	179, 232
BcoDI	GTCTC	2 cut(s)	424, 2234
BfaI	CTAG	3 cut(s)	1284, 2531, 2613
BfoI	RGCGCY	2 cut(s)	1058, 1120
BfuAI	ACCTGC	5 cut(s)	95, 104, 778, 1255, 1685
BglI	GCCNNNNNGGC	2 cut(s)	161, 1077
BlpI	GCTNAGC	1 cut(s)	594
Bme18I	GGWCC	3 cut(s)	761, 1015, 2556
BmeT110I	CYCGRG	1 cut(s)	785
BmgBI	CACGTC	1 cut(s)	373
BmgT120I	GGNCC	3 cut(s)	761, 1015, 2556
BmiI	GGNNCC	6 cut(s)	207, 929, 1398, 2055, 2289, 2493
BmrI	ACTGGG	1 cut(s)	627
BmsI	GCATC	1 cut(s)	2131
BmuI	ACTGGG	1 cut(s)	627
BoxI	GACNNNNGTC	1 cut(s)	98
BplI	GAGNNNNNCTC	4 cut(s)	1103, 1135, 2147, 2179
BpmI	CTGGAG	3 cut(s)	2040, 2274, 2478
Bpu10I	CCTNAGC	4 cut(s)	1305, 2136, 2235, 2577
Bpu1102I	GCTNAGC	1 cut(s)	594
Bpu14I	TTCGAA	1 cut(s)	1654
BpuMI	CCSGG	2 cut(s)	179, 232
BsaAI	YACGTR	1 cut(s)	587
BsaBI	GATNNNNATC	1 cut(s)	942
BsaI	GGTCTC	2 cut(s)	424, 2234
Bsc4I	CCNNNNNNNGG	5 cut(s)	29, 484, 1139, 2358, 2565
Bse118I	RCCGGY	1 cut(s)	1215
Bse1I	ACTGG	7 cut(s)	622, 706, 1018, 1939, 2057, 2291, 2495
Bse3DI	GCAATG	3 cut(s)	1470, 2047, 2485
Bse8I	GATNNNNATC	1 cut(s)	942
BseBI	CCWGG	8 cut(s)	152, 254, 1199, 1535, 1724, 2119, 2353, 2560
BseGI	GGATG	4 cut(s)	385, 394, 2146, 2635
BseJI	GATNNNNATC	1 cut(s)	942
BseLI	CCNNNNNNNGG	5 cut(s)	29, 484, 1139, 2358, 2565
BseMI	GCAATG	3 cut(s)	1470, 2047, 2485
BseMII	CTCAG	5 cut(s)	675, 1125, 1296, 2007, 2241
BseNI	ACTGG	7 cut(s)	622, 706, 1018, 1939, 2057, 2291, 2495
BseSI	GKGCMC	2 cut(s)	179, 856
BseXI	GCAGC	9 cut(s)	408, 430, 613, 703, 1505, 1868, 2506, 2509, 2597
BsgI	GTGCAG	1 cut(s)	1233
Bsh1236I	CGCG	1 cut(s)	139
BshFI	GGCC	7 cut(s)	155, 453, 664, 1282, 1377, 2097, 2331
BshNI	GGYRCC	1 cut(s)	927
BsiHKAI	GWGCWC	4 cut(s)	526, 694, 856, 1477
BsiHKCI	CYCGRG	1 cut(s)	785
BsiSI	CCGG	7 cut(s)	179, 198, 209, 222, 231, 425, 1216
BslFI	GGGAC	4 cut(s)	248, 1370, 1674, 1896
BslI	CCNNNNNNNGG	5 cut(s)	29, 484, 1139, 2358, 2565
BsmAI	GTCTC	2 cut(s)	424, 2234
BsmFI	GGGAC	4 cut(s)	248, 1370, 1674, 1896
BsmI	GAATGC	1 cut(s)	1345
BsnI	GGCC	7 cut(s)	155, 453, 664, 1282, 1377, 2097, 2331
Bso31I	GGTCTC	2 cut(s)	424, 2234
BsoBI	CYCGRG	1 cut(s)	785
Bsp119I	TTCGAA	1 cut(s)	1654
Bsp1286I	GDGCHC	6 cut(s)	179, 208, 526, 694, 856, 1477
Bsp1720I	GCTNAGC	1 cut(s)	594
Bsp19I	CCATGG	2 cut(s)	895, 1253
BspANI	GGCC	7 cut(s)	155, 453, 664, 1282, 1377, 2097, 2331
BspCNI	CTCAG	5 cut(s)	676, 1126, 1297, 2008, 2242
BspFNI	CGCG	1 cut(s)	139
BspLI	GGNNCC	6 cut(s)	207, 929, 1398, 2055, 2289, 2493
BspMI	ACCTGC	5 cut(s)	95, 104, 778, 1255, 1685
BspPI	GGATC	6 cut(s)	244, 776, 951, 1427, 1641, 2557
BspT104I	TTCGAA	1 cut(s)	1654
BspT107I	GGYRCC	1 cut(s)	927
BspTNI	GGTCTC	2 cut(s)	424, 2234
BsrBI	CCGCTC	1 cut(s)	321
BsrDI	GCAATG	3 cut(s)	1470, 2047, 2485
BsrFI	RCCGGY	1 cut(s)	1215
BsrI	ACTGG	7 cut(s)	622, 706, 1018, 1939, 2057, 2291, 2495
BssAI	RCCGGY	1 cut(s)	1215
BssT1I	CCWWGG	8 cut(s)	630, 895, 1253, 2031, 2098, 2265, 2332, 2469
Bst2UI	CCWGG	8 cut(s)	152, 254, 1199, 1535, 1724, 2119, 2353, 2560
Bst4CI	ACNGT	4 cut(s)	185, 888, 906, 1489
Bst6I	CTCTTC	5 cut(s)	571, 976, 1761, 2148, 2589
BstAPI	GCANNNNNTGC	2 cut(s)	51, 96
BstBAI	YACGTR	1 cut(s)	587
BstBI	TTCGAA	1 cut(s)	1654
BstC8I	GCNNGC	8 cut(s)	47, 114, 121, 137, 690, 1311, 2095, 2329
BstDEI	CTNAG	9 cut(s)	594, 684, 1134, 1305, 2016, 2136, 2235, 2250, 2577
BstDSI	CCRYGG	3 cut(s)	107, 895, 1253
BstENI	CCTNNNNNAGG	1 cut(s)	1137
BstF5I	GGATG	4 cut(s)	385, 394, 2146, 2635
BstFNI	CGCG	1 cut(s)	139
BstH2I	RGCGCY	2 cut(s)	1058, 1120
BstHHI	GCGC	6 cut(s)	7, 141, 166, 902, 1057, 1119
BstMAI	GTCTC	2 cut(s)	424, 2234
BstNI	CCWGG	8 cut(s)	152, 254, 1199, 1535, 1724, 2119, 2353, 2560
BstNSI	RCATGY	2 cut(s)	49, 614
BstPAI	GACNNNNGTC	1 cut(s)	98
BstSLI	GKGCMC	2 cut(s)	179, 856
BstSNI	TACGTA	1 cut(s)	587
BstUI	CGCG	1 cut(s)	139
BstV1I	GCAGC	9 cut(s)	408, 430, 613, 703, 1505, 1868, 2506, 2509, 2597
BstX2I	RGATCY	3 cut(s)	249, 1432, 1646
BstXI	CCANNNNNNTGG	6 cut(s)	589, 872, 1997, 2105, 2339, 2435
BstYI	RGATCY	3 cut(s)	249, 1432, 1646
BsuRI	GGCC	7 cut(s)	155, 453, 664, 1282, 1377, 2097, 2331
BtgI	CCRYGG	3 cut(s)	107, 895, 1253
BtrI	CACGTC	1 cut(s)	373
BtsCI	GGATG	4 cut(s)	385, 394, 2146, 2635
BtsI	GCAGTG	1 cut(s)	173
BtsIMutI	CAGTG	5 cut(s)	173, 1701, 1757, 2196, 2502
BveI	ACCTGC	5 cut(s)	95, 104, 778, 1255, 1685
Cac8I	GCNNGC	8 cut(s)	47, 114, 121, 137, 690, 1311, 2095, 2329
CaiI	CAGNNNCTG	1 cut(s)	313
CfoI	GCGC	6 cut(s)	7, 141, 166, 902, 1057, 1119
Cfr10I	RCCGGY	1 cut(s)	1215
Cfr13I	GGNCC	3 cut(s)	761, 1015, 2556
CseI	GACGC	1 cut(s)	88
Csp6I	GTAC	6 cut(s)	186, 928, 1490, 1670, 2048, 2282
CviQI	GTAC	6 cut(s)	186, 928, 1490, 1670, 2048, 2282
DdeI	CTNAG	9 cut(s)	594, 684, 1134, 1305, 2016, 2136, 2235, 2250, 2577
DraI	TTTAAA	1 cut(s)	2641
DraIII	CACNNNGTG	1 cut(s)	108
EaeI	YGGCCR	4 cut(s)	451, 1375, 2095, 2329
Eam1104I	CTCTTC	5 cut(s)	571, 976, 1761, 2148, 2589
EarI	CTCTTC	5 cut(s)	571, 976, 1761, 2148, 2589
EciI	GGCGGA	3 cut(s)	281, 344, 993
Eco105I	TACGTA	1 cut(s)	587
Eco130I	CCWWGG	8 cut(s)	630, 895, 1253, 2031, 2098, 2265, 2332, 2469
Eco147I	AGGCCT	1 cut(s)	664
Eco24I	GRGCYC	1 cut(s)	208
Eco31I	GGTCTC	2 cut(s)	424, 2234
Eco47I	GGWCC	3 cut(s)	761, 1015, 2556
Eco47III	AGCGCT	1 cut(s)	1118
Eco57I	CTGAAG	2 cut(s)	488, 732
Eco88I	CYCGRG	1 cut(s)	785
EcoNI	CCTNNNNNAGG	1 cut(s)	1137
EcoRII	CCWGG	8 cut(s)	150, 252, 1197, 1533, 1722, 2117, 2351, 2558
EcoT14I	CCWWGG	8 cut(s)	630, 895, 1253, 2031, 2098, 2265, 2332, 2469
EcoT22I	ATGCAT	1 cut(s)	47
EcoT38I	GRGCYC	1 cut(s)	208
ErhI	CCWWGG	8 cut(s)	630, 895, 1253, 2031, 2098, 2265, 2332, 2469
FaqI	GGGAC	4 cut(s)	248, 1370, 1674, 1896
FauI	CCCGC	2 cut(s)	194, 1600
FauNDI	CATATG	1 cut(s)	1126
FblI	GTMKAC	1 cut(s)	841
FokI	GGATG	4 cut(s)	392, 401, 2153, 2642
FriOI	GRGCYC	1 cut(s)	208
FspBI	CTAG	3 cut(s)	1284, 2531, 2613
GlaI	GCGC	6 cut(s)	6, 140, 165, 901, 1056, 1118
GsuI	CTGGAG	3 cut(s)	2040, 2274, 2478
HaeII	RGCGCY	2 cut(s)	1058, 1120
HaeIII	GGCC	7 cut(s)	155, 453, 664, 1282, 1377, 2097, 2331
HapII	CCGG	7 cut(s)	179, 198, 209, 222, 231, 425, 1216
HgaI	GACGC	1 cut(s)	88
HhaI	GCGC	6 cut(s)	7, 141, 166, 902, 1057, 1119
Hin6I	GCGC	6 cut(s)	5, 139, 164, 900, 1055, 1117
HinP1I	GCGC	6 cut(s)	5, 139, 164, 900, 1055, 1117
HincII	GTYRAC	2 cut(s)	551, 842
HindII	GTYRAC	2 cut(s)	551, 842
HindIII	AAGCTT	1 cut(s)	596
HpaII	CCGG	7 cut(s)	179, 198, 209, 222, 231, 425, 1216
HphI	GGTGA	9 cut(s)	226, 1539, 1549, 1633, 1738, 1883, 2157, 2391, 2598
Hpy166II	GTNNAC	6 cut(s)	551, 842, 854, 1729, 2194, 2606
Hpy188I	TCNGA	6 cut(s)	70, 751, 1232, 2221, 2251, 2455
Hpy188III	TCNNGA	9 cut(s)	386, 439, 478, 785, 921, 1504, 1820, 1990, 2428
Hpy8I	GTNNAC	6 cut(s)	551, 842, 854, 1729, 2194, 2606
Hpy99I	CGWCG	4 cut(s)	32, 38, 74, 163
HpyCH4III	ACNGT	4 cut(s)	185, 888, 906, 1489
HpyCH4IV	ACGT	5 cut(s)	9, 372, 586, 2302, 2506
HpyF3I	CTNAG	9 cut(s)	594, 684, 1134, 1305, 2016, 2136, 2235, 2250, 2577
HpySE526I	ACGT	5 cut(s)	9, 372, 586, 2302, 2506
HspAI	GCGC	6 cut(s)	5, 139, 164, 900, 1055, 1117
KpnI	GGTACC	1 cut(s)	931
Lsp1109I	GCAGC	9 cut(s)	408, 430, 613, 703, 1505, 1868, 2506, 2509, 2597
LweI	GCATC	1 cut(s)	2131
MaeI	CTAG	3 cut(s)	1284, 2531, 2613
MaeII	ACGT	5 cut(s)	9, 372, 586, 2302, 2506
MbiI	CCGCTC	1 cut(s)	321
MfeI	CAATTG	1 cut(s)	1749
MflI	RGATCY	3 cut(s)	249, 1432, 1646
MhlI	GDGCHC	6 cut(s)	179, 208, 526, 694, 856, 1477
MlsI	TGGCCA	2 cut(s)	2097, 2331
MluNI	TGGCCA	2 cut(s)	2097, 2331
MlyI	GAGTC	5 cut(s)	236, 281, 1203, 1763, 1937
MmeI	TCCRAC	7 cut(s)	93, 357, 1160, 1910, 2086, 2320, 2527
Mox20I	TGGCCA	2 cut(s)	2097, 2331
Mph1103I	ATGCAT	1 cut(s)	47
MroXI	GAANNNNTTC	1 cut(s)	473
MscI	TGGCCA	2 cut(s)	2097, 2331
MseI	TTAA	4 cut(s)	1206, 2370, 2442, 2640
MslI	CAYNNNNRTG	5 cut(s)	507, 587, 1841, 2199, 2628
Msp20I	TGGCCA	2 cut(s)	2097, 2331
MspA1I	CMGCKG	4 cut(s)	421, 1380, 1790, 1859
MspI	CCGG	7 cut(s)	179, 198, 209, 222, 231, 425, 1216
MunI	CAATTG	1 cut(s)	1749
Mva1269I	GAATGC	1 cut(s)	1345
MvaI	CCWGG	8 cut(s)	152, 254, 1199, 1535, 1724, 2119, 2353, 2560
MvnI	CGCG	1 cut(s)	139
NciI	CCSGG	2 cut(s)	179, 232
NcoI	CCATGG	2 cut(s)	895, 1253
NdeI	CATATG	1 cut(s)	1126
NlaIV	GGNNCC	6 cut(s)	207, 929, 1398, 2055, 2289, 2493
NmuCI	GTSAC	6 cut(s)	100, 436, 1235, 1621, 1699, 1755
NsiI	ATGCAT	1 cut(s)	47
NspI	RCATGY	2 cut(s)	49, 614
NspV	TTCGAA	1 cut(s)	1654
PaeI	GCATGC	1 cut(s)	49
PceI	AGGCCT	1 cut(s)	664
PciI	ACATGT	1 cut(s)	610
PcsI	WCGNNNNNNNCGW	1 cut(s)	36
PctI	GAATGC	1 cut(s)	1345
PdmI	GAANNNNTTC	1 cut(s)	473
PfeI	GAWTC	5 cut(s)	558, 1784, 1796, 2216, 2450
PleI	GAGTC	5 cut(s)	235, 280, 1202, 1762, 1937
PpsI	GAGTC	5 cut(s)	235, 280, 1202, 1762, 1937
Ppu21I	YACGTR	1 cut(s)	587
PscI	ACATGT	1 cut(s)	610
PshAI	GACNNNNGTC	1 cut(s)	98
Psp6I	CCWGG	8 cut(s)	150, 252, 1197, 1533, 1722, 2117, 2351, 2558
PspGI	CCWGG	8 cut(s)	150, 252, 1197, 1533, 1722, 2117, 2351, 2558
PspN4I	GGNNCC	6 cut(s)	207, 929, 1398, 2055, 2289, 2493
PspPI	GGNCC	3 cut(s)	761, 1015, 2556
PstNI	CAGNNNCTG	1 cut(s)	313
PsuI	RGATCY	3 cut(s)	249, 1432, 1646
PvuII	CAGCTG	3 cut(s)	421, 1790, 1859
RsaI	GTAC	6 cut(s)	187, 929, 1491, 1671, 2049, 2283
RsaNI	GTAC	6 cut(s)	186, 928, 1490, 1670, 2048, 2282
RseI	CAYNNNNRTG	5 cut(s)	507, 587, 1841, 2199, 2628
SalI	GTCGAC	1 cut(s)	840
SaqAI	TTAA	4 cut(s)	1206, 2370, 2442, 2640
Sau96I	GGNCC	3 cut(s)	761, 1015, 2556
SchI	GAGTC	5 cut(s)	236, 281, 1203, 1763, 1937
SduI	GDGCHC	6 cut(s)	179, 208, 526, 694, 856, 1477
SfaNI	GCATC	1 cut(s)	2131
SfuI	TTCGAA	1 cut(s)	1654
SinI	GGWCC	3 cut(s)	761, 1015, 2556
SmiMI	CAYNNNNRTG	5 cut(s)	507, 587, 1841, 2199, 2628
SnaBI	TACGTA	1 cut(s)	587
SphI	GCATGC	1 cut(s)	49
SseBI	AGGCCT	1 cut(s)	664
SspMI	CTAG	3 cut(s)	1284, 2531, 2613
StuI	AGGCCT	1 cut(s)	664
StyI	CCWWGG	8 cut(s)	630, 895, 1253, 2031, 2098, 2265, 2332, 2469
TaaI	ACNGT	4 cut(s)	185, 888, 906, 1489
TaiI	ACGT	5 cut(s)	12, 375, 589, 2305, 2509
TaqI	TCGA	5 cut(s)	158, 191, 841, 1444, 1654
TatI	WGTACW	1 cut(s)	1669
TauI	GCSGC	4 cut(s)	119, 453, 626, 1380
TfiI	GAWTC	5 cut(s)	558, 1784, 1796, 2216, 2450
Tru1I	TTAA	4 cut(s)	1206, 2370, 2442, 2640
Tru9I	TTAA	4 cut(s)	1206, 2370, 2442, 2640
TscAI	CASTG	5 cut(s)	173, 1708, 1764, 2203, 2502
TseFI	GTSAC	6 cut(s)	100, 436, 1235, 1621, 1699, 1755
TseI	GCWGC	9 cut(s)	418, 421, 626, 716, 1518, 1856, 2519, 2522, 2585
Tsp45I	GTSAC	6 cut(s)	100, 436, 1235, 1621, 1699, 1755
TspDTI	ATGAA	7 cut(s)	1281, 1757, 1809, 1842, 1989, 2193, 2427
TspGWI	ACGGA	1 cut(s)	296
TspRI	CASTG	5 cut(s)	173, 1708, 1764, 2203, 2502
VneI	GTGCAC	1 cut(s)	852
VpaK11BI	GGWCC	3 cut(s)	761, 1015, 2556
XagI	CCTNNNNNAGG	1 cut(s)	1137
XapI	RAATTY	2 cut(s)	1511, 1977
XceI	RCATGY	2 cut(s)	49, 614
XcmI	CCANNNNNNNNNTGG	2 cut(s)	485, 2251
XmiI	GTMKAC	1 cut(s)	841
XmnI	GAANNNNTTC	1 cut(s)	473
XspI	CTAG	3 cut(s)	1284, 2531, 2613
Zsp2I	ATGCAT	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.