Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004618.1

Orthogroup ID

OG0012939

Physical Location & Seq

Genomic Coordinates Forward (+)

22378 .. 29383

Gene Structure 7006 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004618.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

atggattcttccaacctcacttcgcttcccgaggacgcacccgaatccaatcaacccccccaccaccaacagccaccgccccaaccccgtcctctctccgccttcgccgcccgccccgatcgcccagccactcagagtagctcgcaaaagttcgccgctttagattggaaggactacttcgacaaagaagatgatatctccgttccgggctccgacgatgtttttcatgtatatatggcaggaacagagggtccggttgtgttttgcctacatggaggtggctactcagggctttcatttgccttgtcagcaaggcaaatcaaggagaaggctcaagtagttgccatggacttgagaggacatggaaggtcaacgaatgaaaatgagactgatctttctattgagaccatgtgcaatgatgttgaggctgttctgaaagcaatgtatggagattctcctcctgcaattgtgcttgttggccacagtatgggagggtcagtagctgtgcatgttgctgcaagaaaagcattgcctagcttggctgggctggttgttgtagatgttgttgagggaacagcaatggcttcgttgattcatatgcaaaaaatcctatcaggcaggacgcatcatttttcaagcattgaaaaagcgatagaatcgactgtaaagggaggctctttgagaaacattgagtctgctcgtgtatcagtacctgccacattaaagtatgatgattcaaagaaatgttacatttacagagcacgactcgaagaaacagaacaatattggaaaagctggtatgaaggcctttctgaaaaatttctttcatctcctgttccaaagctcctgcttttagctggaacagaccgactcgacagaactctgacaattggtcaaatgcaaggcaagttccaaatggtggttgtcagacatactgggcatgccatacaagaagatgtacctgatgaatttgcaacgctaataataaatttcatatctcgtaaccgtataggcccacatggagttgagattccaggacttcgtcggccatcccagcccaaaccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0006464 GO:0006482 GO:0006807 GO:0008150 GO:0008152 GO:0008214 GO:0009987 GO:0010921 GO:0016787 GO:0016788 GO:0019208 GO:0019220 GO:0019222 GO:0019538 GO:0019888 GO:0019899 GO:0019902 GO:0019903 GO:0030234 GO:0031323 GO:0031399 GO:0032268 GO:0035303 GO:0035304 GO:0036211 GO:0043170 GO:0043412 GO:0043666 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051336 GO:0051721 GO:0051722 GO:0051723 GO:0052689 GO:0060255 GO:0065007 GO:0065009 GO:0070988 GO:0071704 GO:0080090 GO:0098772 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_6

Protein Analysis

355

Amino Acids

38.84

Weight (kDa)

6.23

Isoelectric Point (pI)

51.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012939)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10050 AT4G10050
fragaria_vesca	FvH4_5g33360 FvH4_5g33360
malus_domestica	MD08G1213000.v1.1 MD15G1395500.v1.1
prunus_persica	Prupe.1G544300_v2.0.a1 Prupe.1G544300_v2.0.a1 Prupe.1G544300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0232091
rosa_laevigata	RLG00000001392
rosa_multiflora	Rmu_sc0000616.1_g000007 Rmu_sc0004618.1_g000006
rosa_roxburghii	Rroxscaffold_3G00228820
rosa_rugosa	Rorug07G0269000
rosa_samantha	Rh7BG397600 Rh7CG443900
rosa_wichuraiana	Rw7G035030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	721
AccB7I	CCANNNNNTGG	2 cut(s)	487, 919
AciI	CCGC	5 cut(s)	77, 99, 108, 112, 156
AcoI	YGGCCR	2 cut(s)	478, 1046
AcsI	RAATTY	3 cut(s)	818, 968, 988
AfaI	GTAC	2 cut(s)	711, 960
AfiI	CCNNNNNNNGG	2 cut(s)	487, 919
AgsI	TTSAA	3 cut(s)	636, 644, 738
AhdI	GACNNNNNGTC	1 cut(s)	891
AjnI	CCWGG	1 cut(s)	1033
AloI	GAACNNNNNNTCC	2 cut(s)	235, 267
AluBI	AGCT	6 cut(s)	141, 503, 537, 795, 844, 857
AluI	AGCT	6 cut(s)	141, 503, 537, 795, 844, 857
Alw21I	GWGCWC	1 cut(s)	763
Alw26I	GTCTC	2 cut(s)	380, 398
AlwNI	CAGNNNCTG	2 cut(s)	503, 713
Ama87I	CYCGRG	1 cut(s)	29
AoxI	GGCC	4 cut(s)	478, 805, 1012, 1046
ApeKI	GCWGC	1 cut(s)	515
ApoI	RAATTY	3 cut(s)	818, 968, 988
Asp700I	GAANNNNTTC	1 cut(s)	819
AspS9I	GGNCC	2 cut(s)	251, 1013
AsuC2I	CCSGG	1 cut(s)	207
AvaI	CYCGRG	1 cut(s)	29
AvaII	GGWCC	1 cut(s)	251
BalI	TGGCCA	1 cut(s)	480
BanII	GRGCYC	1 cut(s)	212
BauI	CACGAG	1 cut(s)	699
Bbv12I	GWGCWC	1 cut(s)	763
BbvI	GCAGC	1 cut(s)	502
BccI	CCATC	1 cut(s)	1057
BcgI	CGANNNNNNTGC	2 cut(s)	567, 601
BciT130I	CCWGG	1 cut(s)	1035
BcnI	CCSGG	1 cut(s)	207
BcoDI	GTCTC	2 cut(s)	380, 398
BfaI	CTAG	1 cut(s)	534
BfuAI	ACCTGC	1 cut(s)	721
BisI	GCNGC	3 cut(s)	108, 156, 516
BlsI	GCNGC	3 cut(s)	109, 157, 517
Bme1390I	CCNGG	2 cut(s)	207, 1035
Bme18I	GGWCC	1 cut(s)	251
BmeRI	GACNNNNNGTC	1 cut(s)	891
BmeT110I	CYCGRG	1 cut(s)	29
BmgT120I	GGNCC	2 cut(s)	251, 1013
BmiI	GGNNCC	2 cut(s)	211, 252
BmrFI	CCNGG	2 cut(s)	207, 1035
BmrI	ACTGGG	1 cut(s)	945
BmsI	GCATC	1 cut(s)	634
BmuI	ACTGGG	1 cut(s)	945
BplI	GAGNNNNNCTC	2 cut(s)	750, 782
BpuEI	CTTGAG	2 cut(s)	318, 373
BpuMI	CCSGG	1 cut(s)	207
BsaI	GGTCTC	1 cut(s)	398
BsaJI	CCNNGG	2 cut(s)	30, 345
BsaWI	WCCGGW	1 cut(s)	253
BsaXI	ACNNNNNCTCC	2 cut(s)	483, 513
Bsc4I	CCNNNNNNNGG	2 cut(s)	487, 919
Bse1I	ACTGG	1 cut(s)	940
Bse3DI	GCAATG	4 cut(s)	421, 447, 527, 585
BseBI	CCWGG	1 cut(s)	1035
BseDI	CCNNGG	2 cut(s)	30, 345
BseGI	GGATG	1 cut(s)	1049
BseLI	CCNNNNNNNGG	2 cut(s)	487, 919
BseMI	GCAATG	4 cut(s)	421, 447, 527, 585
BseMII	CTCAG	2 cut(s)	146, 300
BseNI	ACTGG	1 cut(s)	940
BseRI	GAGGAG	1 cut(s)	447
BseXI	GCAGC	1 cut(s)	502
BseYI	CCCAGC	3 cut(s)	124, 542, 1053
Bsh1285I	CGRYCG	1 cut(s)	121
BshFI	GGCC	4 cut(s)	480, 807, 1014, 1048
BsiEI	CGRYCG	1 cut(s)	121
BsiHKAI	GWGCWC	1 cut(s)	763
BsiHKCI	CYCGRG	1 cut(s)	29
BsiSI	CCGG	2 cut(s)	206, 254
BslI	CCNNNNNNNGG	2 cut(s)	487, 919
BsmAI	GTCTC	2 cut(s)	380, 398
BsnI	GGCC	4 cut(s)	480, 807, 1014, 1048
Bso31I	GGTCTC	1 cut(s)	398
BsoBI	CYCGRG	1 cut(s)	29
Bsp1286I	GDGCHC	2 cut(s)	212, 763
Bsp143I	GATC	2 cut(s)	118, 391
Bsp19I	CCATGG	1 cut(s)	345
BspACI	CCGC	5 cut(s)	77, 99, 108, 112, 156
BspANI	GGCC	4 cut(s)	480, 807, 1014, 1048
BspCNI	CTCAG	2 cut(s)	145, 299
BspLI	GGNNCC	2 cut(s)	211, 252
BspMI	ACCTGC	1 cut(s)	721
BspTNI	GGTCTC	1 cut(s)	398
BsrDI	GCAATG	4 cut(s)	421, 447, 527, 585
BsrI	ACTGG	1 cut(s)	940
BssECI	CCNNGG	2 cut(s)	30, 345
BssMI	GATC	2 cut(s)	118, 391
BssSI	CACGAG	1 cut(s)	699
BssT1I	CCWWGG	1 cut(s)	345
Bst2BI	CACGAG	1 cut(s)	699
Bst2UI	CCWGG	1 cut(s)	1035
Bst4CI	ACNGT	3 cut(s)	485, 664, 1007
BstC8I	GCNNGC	3 cut(s)	112, 143, 942
BstDEI	CTNAG	2 cut(s)	132, 286
BstDSI	CCRYGG	1 cut(s)	345
BstF5I	GGATG	1 cut(s)	1049
BstKTI	GATC	2 cut(s)	121, 394
BstMAI	GTCTC	2 cut(s)	380, 398
BstMBI	GATC	2 cut(s)	118, 391
BstMCI	CGRYCG	1 cut(s)	121
BstMWI	GCNNNNNNNGC	5 cut(s)	107, 120, 308, 524, 1054
BstNI	CCWGG	1 cut(s)	1035
BstNSI	RCATGY	2 cut(s)	512, 944
BstSCI	CCNGG	2 cut(s)	205, 1033
BstV1I	GCAGC	1 cut(s)	502
BsuRI	GGCC	4 cut(s)	480, 807, 1014, 1048
BtgI	CCRYGG	1 cut(s)	345
BtsCI	GGATG	1 cut(s)	1049
BveI	ACCTGC	1 cut(s)	721
Cac8I	GCNNGC	3 cut(s)	112, 143, 942
CaiI	CAGNNNCTG	2 cut(s)	503, 713
Cfr13I	GGNCC	2 cut(s)	251, 1013
CseI	GACGC	2 cut(s)	44, 631
Csp6I	GTAC	2 cut(s)	710, 959
CviAII	CATG	8 cut(s)	227, 272, 346, 362, 409, 509, 941, 1019
CviQI	GTAC	2 cut(s)	710, 959
DdeI	CTNAG	2 cut(s)	132, 286
DpnI	GATC	2 cut(s)	120, 393
DpnII	GATC	2 cut(s)	118, 391
DriI	GACNNNNNGTC	1 cut(s)	891
EaeI	YGGCCR	2 cut(s)	478, 1046
Eam1105I	GACNNNNNGTC	1 cut(s)	891
EciI	GGCGGA	1 cut(s)	88
Eco130I	CCWWGG	1 cut(s)	345
Eco147I	AGGCCT	1 cut(s)	807
Eco24I	GRGCYC	1 cut(s)	212
Eco31I	GGTCTC	1 cut(s)	398
Eco32I	GATATC	1 cut(s)	196
Eco47I	GGWCC	1 cut(s)	251
Eco88I	CYCGRG	1 cut(s)	29
EcoRII	CCWGG	1 cut(s)	1033
EcoRV	GATATC	1 cut(s)	196
EcoT14I	CCWWGG	1 cut(s)	345
EcoT38I	GRGCYC	1 cut(s)	212
ErhI	CCWWGG	1 cut(s)	345
FaeI	CATG	8 cut(s)	230, 275, 349, 365, 412, 512, 944, 1022
FalI	AAGNNNNNCTT	2 cut(s)	161, 193
FatI	CATG	8 cut(s)	226, 271, 345, 361, 408, 508, 940, 1018
FauI	CCCGC	1 cut(s)	119
FauNDI	CATATG	1 cut(s)	597
Fnu4HI	GCNGC	3 cut(s)	108, 156, 516
FokI	GGATG	1 cut(s)	1036
FriOI	GRGCYC	1 cut(s)	212
Fsp4HI	GCNGC	3 cut(s)	108, 156, 516
FspBI	CTAG	1 cut(s)	534
GluI	GCNGC	3 cut(s)	108, 156, 516
GsaI	CCCAGC	3 cut(s)	128, 546, 1057
HaeIII	GGCC	4 cut(s)	480, 807, 1014, 1048
HapII	CCGG	2 cut(s)	206, 254
HgaI	GACGC	2 cut(s)	44, 631
Hin1II	CATG	8 cut(s)	230, 275, 349, 365, 412, 512, 944, 1022
HincII	GTYRAC	1 cut(s)	372
HindII	GTYRAC	1 cut(s)	372
HpaII	CCGG	2 cut(s)	206, 254
Hpy166II	GTNNAC	1 cut(s)	372
Hpy188I	TCNGA	6 cut(s)	135, 214, 435, 814, 885, 929
Hpy188III	TCNNGA	1 cut(s)	29
Hpy8I	GTNNAC	1 cut(s)	372
Hpy99I	CGWCG	2 cut(s)	218, 1047
HpyAV	CCTTC	5 cut(s)	112, 163, 322, 360, 797
HpyCH4III	ACNGT	3 cut(s)	485, 664, 1007
HpyCH4V	TGCA	7 cut(s)	414, 464, 508, 518, 601, 901, 974
HpyF10VI	GCNNNNNNNGC	5 cut(s)	107, 120, 308, 524, 1054
HpyF3I	CTNAG	2 cut(s)	132, 286
Hsp92II	CATG	8 cut(s)	230, 275, 349, 365, 412, 512, 944, 1022
Kzo9I	GATC	2 cut(s)	118, 391
LmnI	GCTCC	2 cut(s)	215, 849
Lsp1109I	GCAGC	1 cut(s)	502
LweI	GCATC	1 cut(s)	634
MaeI	CTAG	1 cut(s)	534
MaeIII	GTNAC	2 cut(s)	746, 1001
MalI	GATC	2 cut(s)	120, 393
MboI	GATC	2 cut(s)	118, 391
MboII	GAAGA	3 cut(s)	200, 782, 965
MfeI	CAATTG	2 cut(s)	465, 888
MhlI	GDGCHC	2 cut(s)	212, 763
MlsI	TGGCCA	1 cut(s)	480
MluCI	AATT	5 cut(s)	465, 818, 888, 968, 988
MluNI	TGGCCA	1 cut(s)	480
MlyI	GAGTC	3 cut(s)	701, 759, 864
MmeI	TCCRAC	2 cut(s)	36, 237
Mox20I	TGGCCA	1 cut(s)	480
MroXI	GAANNNNTTC	1 cut(s)	819
MscI	TGGCCA	1 cut(s)	480
MseI	TTAA	1 cut(s)	722
MslI	CAYNNNNRTG	1 cut(s)	276
Msp20I	TGGCCA	1 cut(s)	480
MspI	CCGG	2 cut(s)	206, 254
MspR9I	CCNGG	2 cut(s)	207, 1035
MunI	CAATTG	2 cut(s)	465, 888
MvaI	CCWGG	1 cut(s)	1035
MwoI	GCNNNNNNNGC	5 cut(s)	107, 120, 308, 524, 1054
NciI	CCSGG	1 cut(s)	207
NcoI	CCATGG	1 cut(s)	345
NdeI	CATATG	1 cut(s)	597
NdeII	GATC	2 cut(s)	118, 391
NlaIII	CATG	8 cut(s)	230, 275, 349, 365, 412, 512, 944, 1022
NlaIV	GGNNCC	2 cut(s)	211, 252
NspI	RCATGY	2 cut(s)	512, 944
PaeI	GCATGC	1 cut(s)	944
PceI	AGGCCT	1 cut(s)	807
PdmI	GAANNNNTTC	1 cut(s)	819
PfeI	GAWTC	7 cut(s)	5, 44, 452, 592, 656, 734, 1030
PflFI	GACNNNGTC	1 cut(s)	1041
PflMI	CCANNNNNTGG	2 cut(s)	487, 919
PfoI	TCCNGGA	1 cut(s)	1033
PkrI	GCNGC	3 cut(s)	109, 157, 517
Ple19I	CGATCG	1 cut(s)	121
PleI	GAGTC	3 cut(s)	700, 759, 864
PpsI	GAGTC	3 cut(s)	700, 759, 864
Psp6I	CCWGG	1 cut(s)	1033
PspFI	CCCAGC	3 cut(s)	124, 542, 1053
PspGI	CCWGG	1 cut(s)	1033
PspN4I	GGNNCC	2 cut(s)	211, 252
PspPI	GGNCC	2 cut(s)	251, 1013
PstNI	CAGNNNCTG	2 cut(s)	503, 713
PsyI	GACNNNGTC	1 cut(s)	1041
PvuI	CGATCG	1 cut(s)	121
RsaI	GTAC	2 cut(s)	711, 960
RsaNI	GTAC	2 cut(s)	710, 959
RseI	CAYNNNNRTG	1 cut(s)	276
SaqAI	TTAA	1 cut(s)	722
SatI	GCNGC	3 cut(s)	108, 156, 516
Sau3AI	GATC	2 cut(s)	118, 391
Sau96I	GGNCC	2 cut(s)	251, 1013
SchI	GAGTC	3 cut(s)	701, 759, 864
ScrFI	CCNGG	2 cut(s)	207, 1035
SduI	GDGCHC	2 cut(s)	212, 763
SfaNI	GCATC	1 cut(s)	634
SinI	GGWCC	1 cut(s)	251
SmiMI	CAYNNNNRTG	1 cut(s)	276
SmlI	CTYRAG	2 cut(s)	333, 352
SmoI	CTYRAG	2 cut(s)	333, 352
SphI	GCATGC	1 cut(s)	944
Sse9I	AATT	5 cut(s)	465, 818, 888, 968, 988
SseBI	AGGCCT	1 cut(s)	807
SsiI	CCGC	5 cut(s)	77, 99, 108, 112, 156
SspI	AATATT	1 cut(s)	785
SspMI	CTAG	1 cut(s)	534
StuI	AGGCCT	1 cut(s)	807
StyD4I	CCNGG	2 cut(s)	205, 1033
StyI	CCWWGG	1 cut(s)	345
TaaI	ACNGT	3 cut(s)	485, 664, 1007
TaqI	TCGA	4 cut(s)	180, 659, 768, 873
TaqII	GACCGA	1 cut(s)	882
TasI	AATT	5 cut(s)	465, 818, 888, 968, 988
TauI	GCSGC	2 cut(s)	110, 158
TfiI	GAWTC	7 cut(s)	5, 44, 452, 592, 656, 734, 1030
Tru1I	TTAA	1 cut(s)	722
Tru9I	TTAA	1 cut(s)	722
TseI	GCWGC	1 cut(s)	515
TspDTI	ATGAA	8 cut(s)	215, 285, 393, 584, 816, 816, 981, 982
TspGWI	ACGGA	1 cut(s)	190
Tth111I	GACNNNGTC	1 cut(s)	1041
Van91I	CCANNNNNTGG	2 cut(s)	487, 919
VpaK11BI	GGWCC	1 cut(s)	251
XapI	RAATTY	3 cut(s)	818, 968, 988
XceI	RCATGY	2 cut(s)	512, 944
XmnI	GAANNNNTTC	1 cut(s)	819
XspI	CTAG	1 cut(s)	534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.