Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000616.1

Orthogroup ID

OG0012939

Physical Location & Seq

Genomic Coordinates Reverse (-)

41030 .. 48111

Gene Structure 7082 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000616.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

atggattcttcaaacctcgcttcccttcccgaggacacccccgaatccaatcaacccccccaccaccaacagccgccgccccaaccccgtcctctctccgccttcgccgcccgccccgatcgcccagccactcagagtagctcgcaaaagttcgctgctttagattggaaggactatttcgacaaagaagatgatatctccattccgggctccgacgacgtttttcatgtatatatggcaggaacagagggtccggttgtgttttgccttcatggaggtggctactcagggctttcatttgccttgtcagcaaggcaaatcaaggagaaggctcaagtagttgccatggacttgagaggacatggaaggtcaacgaatgaaaatgagactgatctttctattgagaccatgtgcaatgatgttgaggctgttctgaaagcaatgtatggagattctcctcctgcaattgtgcttgttggccacagtatgggagggtcagtagctgtgcatgttgctgcaagaaaagcattgcctagcttggctgggctggttgttgtagatgttgttgagggaacagcaatggcttcgttgattcatatgcaaaaaatcctatcaggcaggacgcatcatttttcaagcattgaaaaagcgatagaatcgactgtaaagggaggctctttgagaaacattgagtctgctcgtgtatcagtacctgccacattaaagtatgatgattcaaagaaatgttacatttacagagcacgactcgaagaaacagaacaatattggaaaagctggtatgaaggcctttctgaaaaatttctttcatctcctgttccaaagctcctgcttttagctggaacagaccgactcgacagaactctgacaattggtcaaatgcaaggcaagttccaaatggtggttgtcagacatactgggcatgccatacaagaagatgtacctgatgaatttgcaacgctaataataaatttcatatctcgtaaccgtataggcccacatggagttgagattccaggacttcgtcggccatcccagcccaaaccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0006464 GO:0006482 GO:0006807 GO:0008150 GO:0008152 GO:0008214 GO:0009987 GO:0010921 GO:0016787 GO:0016788 GO:0019208 GO:0019220 GO:0019222 GO:0019538 GO:0019888 GO:0019899 GO:0019902 GO:0019903 GO:0030234 GO:0031323 GO:0031399 GO:0032268 GO:0035303 GO:0035304 GO:0036211 GO:0043170 GO:0043412 GO:0043666 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051336 GO:0051721 GO:0051722 GO:0051723 GO:0052689 GO:0060255 GO:0065007 GO:0065009 GO:0070988 GO:0071704 GO:0080090 GO:0098772 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_6

Protein Analysis

355

Amino Acids

38.85

Weight (kDa)

6.23

Isoelectric Point (pI)

49.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012939)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10050 AT4G10050
fragaria_vesca	FvH4_5g33360 FvH4_5g33360
malus_domestica	MD08G1213000.v1.1 MD15G1395500.v1.1
prunus_persica	Prupe.1G544300_v2.0.a1 Prupe.1G544300_v2.0.a1 Prupe.1G544300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0232091
rosa_laevigata	RLG00000001392
rosa_multiflora	Rmu_sc0000616.1_g000007 Rmu_sc0004618.1_g000006
rosa_roxburghii	Rroxscaffold_3G00228820
rosa_rugosa	Rorug07G0269000
rosa_samantha	Rh7BG397600 Rh7CG443900
rosa_wichuraiana	Rw7G035030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	721
AccB7I	CCANNNNNTGG	2 cut(s)	487, 919
AciI	CCGC	5 cut(s)	74, 77, 99, 108, 112
AcoI	YGGCCR	2 cut(s)	478, 1046
AcsI	RAATTY	3 cut(s)	818, 968, 988
AfaI	GTAC	2 cut(s)	711, 960
AfiI	CCNNNNNNNGG	3 cut(s)	31, 487, 919
AgsI	TTSAA	4 cut(s)	12, 636, 644, 738
AhdI	GACNNNNNGTC	1 cut(s)	891
AjnI	CCWGG	1 cut(s)	1033
AloI	GAACNNNNNNTCC	2 cut(s)	235, 267
AluBI	AGCT	6 cut(s)	141, 503, 537, 795, 844, 857
AluI	AGCT	6 cut(s)	141, 503, 537, 795, 844, 857
Alw21I	GWGCWC	1 cut(s)	763
Alw26I	GTCTC	2 cut(s)	380, 398
AlwNI	CAGNNNCTG	2 cut(s)	503, 713
Ama87I	CYCGRG	1 cut(s)	29
AoxI	GGCC	4 cut(s)	478, 805, 1012, 1046
ApeKI	GCWGC	2 cut(s)	155, 515
ApoI	RAATTY	3 cut(s)	818, 968, 988
Asp700I	GAANNNNTTC	1 cut(s)	819
AspS9I	GGNCC	2 cut(s)	251, 1013
AsuC2I	CCSGG	1 cut(s)	207
AvaI	CYCGRG	1 cut(s)	29
AvaII	GGWCC	1 cut(s)	251
BalI	TGGCCA	1 cut(s)	480
BanII	GRGCYC	1 cut(s)	212
BauI	CACGAG	1 cut(s)	699
Bbv12I	GWGCWC	1 cut(s)	763
BbvI	GCAGC	2 cut(s)	142, 502
BccI	CCATC	1 cut(s)	1057
BcgI	CGANNNNNNTGC	2 cut(s)	567, 601
BciT130I	CCWGG	1 cut(s)	1035
BcnI	CCSGG	1 cut(s)	207
BcoDI	GTCTC	2 cut(s)	380, 398
BfaI	CTAG	1 cut(s)	534
BfuAI	ACCTGC	1 cut(s)	721
BisI	GCNGC	5 cut(s)	74, 77, 108, 156, 516
BlsI	GCNGC	5 cut(s)	75, 78, 109, 157, 517
Bme1390I	CCNGG	2 cut(s)	207, 1035
Bme18I	GGWCC	1 cut(s)	251
BmeRI	GACNNNNNGTC	1 cut(s)	891
BmeT110I	CYCGRG	1 cut(s)	29
BmgT120I	GGNCC	2 cut(s)	251, 1013
BmiI	GGNNCC	2 cut(s)	211, 252
BmrFI	CCNGG	2 cut(s)	207, 1035
BmrI	ACTGGG	1 cut(s)	945
BmsI	GCATC	1 cut(s)	634
BmuI	ACTGGG	1 cut(s)	945
BplI	GAGNNNNNCTC	2 cut(s)	750, 782
BpuEI	CTTGAG	2 cut(s)	318, 373
BpuMI	CCSGG	1 cut(s)	207
BsaI	GGTCTC	1 cut(s)	398
BsaJI	CCNNGG	2 cut(s)	30, 345
BsaWI	WCCGGW	1 cut(s)	253
BsaXI	ACNNNNNCTCC	2 cut(s)	483, 513
Bsc4I	CCNNNNNNNGG	3 cut(s)	31, 487, 919
Bse1I	ACTGG	1 cut(s)	940
Bse3DI	GCAATG	4 cut(s)	421, 447, 527, 585
BseBI	CCWGG	1 cut(s)	1035
BseDI	CCNNGG	2 cut(s)	30, 345
BseGI	GGATG	1 cut(s)	1049
BseLI	CCNNNNNNNGG	3 cut(s)	31, 487, 919
BseMI	GCAATG	4 cut(s)	421, 447, 527, 585
BseMII	CTCAG	2 cut(s)	146, 300
BseNI	ACTGG	1 cut(s)	940
BseRI	GAGGAG	1 cut(s)	447
BseXI	GCAGC	2 cut(s)	142, 502
BseYI	CCCAGC	3 cut(s)	124, 542, 1053
Bsh1285I	CGRYCG	1 cut(s)	121
BshFI	GGCC	4 cut(s)	480, 807, 1014, 1048
BsiEI	CGRYCG	1 cut(s)	121
BsiHKAI	GWGCWC	1 cut(s)	763
BsiHKCI	CYCGRG	1 cut(s)	29
BsiSI	CCGG	2 cut(s)	206, 254
BslI	CCNNNNNNNGG	3 cut(s)	31, 487, 919
BsmAI	GTCTC	2 cut(s)	380, 398
BsnI	GGCC	4 cut(s)	480, 807, 1014, 1048
Bso31I	GGTCTC	1 cut(s)	398
BsoBI	CYCGRG	1 cut(s)	29
Bsp1286I	GDGCHC	2 cut(s)	212, 763
Bsp143I	GATC	2 cut(s)	118, 391
Bsp19I	CCATGG	1 cut(s)	345
BspACI	CCGC	5 cut(s)	74, 77, 99, 108, 112
BspANI	GGCC	4 cut(s)	480, 807, 1014, 1048
BspCNI	CTCAG	2 cut(s)	145, 299
BspLI	GGNNCC	2 cut(s)	211, 252
BspMI	ACCTGC	1 cut(s)	721
BspTNI	GGTCTC	1 cut(s)	398
BsrDI	GCAATG	4 cut(s)	421, 447, 527, 585
BsrI	ACTGG	1 cut(s)	940
BssECI	CCNNGG	2 cut(s)	30, 345
BssMI	GATC	2 cut(s)	118, 391
BssSI	CACGAG	1 cut(s)	699
BssT1I	CCWWGG	1 cut(s)	345
Bst2BI	CACGAG	1 cut(s)	699
Bst2UI	CCWGG	1 cut(s)	1035
Bst4CI	ACNGT	3 cut(s)	485, 664, 1007
BstC8I	GCNNGC	3 cut(s)	112, 143, 942
BstDEI	CTNAG	2 cut(s)	132, 286
BstDSI	CCRYGG	1 cut(s)	345
BstENI	CCTNNNNNAGG	1 cut(s)	29
BstF5I	GGATG	1 cut(s)	1049
BstKTI	GATC	2 cut(s)	121, 394
BstMAI	GTCTC	2 cut(s)	380, 398
BstMBI	GATC	2 cut(s)	118, 391
BstMCI	CGRYCG	1 cut(s)	121
BstMWI	GCNNNNNNNGC	5 cut(s)	107, 120, 308, 524, 1054
BstNI	CCWGG	1 cut(s)	1035
BstNSI	RCATGY	2 cut(s)	512, 944
BstSCI	CCNGG	2 cut(s)	205, 1033
BstV1I	GCAGC	2 cut(s)	142, 502
BsuRI	GGCC	4 cut(s)	480, 807, 1014, 1048
BtgI	CCRYGG	1 cut(s)	345
BtsCI	GGATG	1 cut(s)	1049
BveI	ACCTGC	1 cut(s)	721
Cac8I	GCNNGC	3 cut(s)	112, 143, 942
CaiI	CAGNNNCTG	2 cut(s)	503, 713
Cfr13I	GGNCC	2 cut(s)	251, 1013
CseI	GACGC	1 cut(s)	631
Csp6I	GTAC	2 cut(s)	710, 959
CviAII	CATG	8 cut(s)	227, 272, 346, 362, 409, 509, 941, 1019
CviQI	GTAC	2 cut(s)	710, 959
DdeI	CTNAG	2 cut(s)	132, 286
DpnI	GATC	2 cut(s)	120, 393
DpnII	GATC	2 cut(s)	118, 391
DriI	GACNNNNNGTC	1 cut(s)	891
EaeI	YGGCCR	2 cut(s)	478, 1046
Eam1105I	GACNNNNNGTC	1 cut(s)	891
EciI	GGCGGA	1 cut(s)	88
Eco130I	CCWWGG	1 cut(s)	345
Eco147I	AGGCCT	1 cut(s)	807
Eco24I	GRGCYC	1 cut(s)	212
Eco31I	GGTCTC	1 cut(s)	398
Eco32I	GATATC	1 cut(s)	196
Eco47I	GGWCC	1 cut(s)	251
Eco88I	CYCGRG	1 cut(s)	29
EcoNI	CCTNNNNNAGG	1 cut(s)	29
EcoRII	CCWGG	1 cut(s)	1033
EcoRV	GATATC	1 cut(s)	196
EcoT14I	CCWWGG	1 cut(s)	345
EcoT38I	GRGCYC	1 cut(s)	212
ErhI	CCWWGG	1 cut(s)	345
FaeI	CATG	8 cut(s)	230, 275, 349, 365, 412, 512, 944, 1022
FatI	CATG	8 cut(s)	226, 271, 345, 361, 408, 508, 940, 1018
FauI	CCCGC	1 cut(s)	119
FauNDI	CATATG	1 cut(s)	597
Fnu4HI	GCNGC	5 cut(s)	74, 77, 108, 156, 516
FokI	GGATG	1 cut(s)	1036
FriOI	GRGCYC	1 cut(s)	212
Fsp4HI	GCNGC	5 cut(s)	74, 77, 108, 156, 516
FspBI	CTAG	1 cut(s)	534
GluI	GCNGC	5 cut(s)	74, 77, 108, 156, 516
GsaI	CCCAGC	3 cut(s)	128, 546, 1057
HaeIII	GGCC	4 cut(s)	480, 807, 1014, 1048
HapII	CCGG	2 cut(s)	206, 254
HgaI	GACGC	1 cut(s)	631
Hin1II	CATG	8 cut(s)	230, 275, 349, 365, 412, 512, 944, 1022
HincII	GTYRAC	1 cut(s)	372
HindII	GTYRAC	1 cut(s)	372
HpaII	CCGG	2 cut(s)	206, 254
Hpy166II	GTNNAC	1 cut(s)	372
Hpy188I	TCNGA	6 cut(s)	135, 214, 435, 814, 885, 929
Hpy188III	TCNNGA	1 cut(s)	29
Hpy8I	GTNNAC	1 cut(s)	372
Hpy99I	CGWCG	3 cut(s)	218, 221, 1047
HpyAV	CCTTC	7 cut(s)	35, 112, 163, 278, 322, 360, 797
HpyCH4III	ACNGT	3 cut(s)	485, 664, 1007
HpyCH4IV	ACGT	1 cut(s)	219
HpyCH4V	TGCA	7 cut(s)	414, 464, 508, 518, 601, 901, 974
HpyF10VI	GCNNNNNNNGC	5 cut(s)	107, 120, 308, 524, 1054
HpyF3I	CTNAG	2 cut(s)	132, 286
HpySE526I	ACGT	1 cut(s)	219
Hsp92II	CATG	8 cut(s)	230, 275, 349, 365, 412, 512, 944, 1022
Kzo9I	GATC	2 cut(s)	118, 391
LmnI	GCTCC	2 cut(s)	215, 849
Lsp1109I	GCAGC	2 cut(s)	142, 502
LweI	GCATC	1 cut(s)	634
MaeI	CTAG	1 cut(s)	534
MaeII	ACGT	1 cut(s)	219
MaeIII	GTNAC	2 cut(s)	746, 1001
MalI	GATC	2 cut(s)	120, 393
MboI	GATC	2 cut(s)	118, 391
MboII	GAAGA	3 cut(s)	200, 782, 965
MfeI	CAATTG	2 cut(s)	465, 888
MhlI	GDGCHC	2 cut(s)	212, 763
MlsI	TGGCCA	1 cut(s)	480
MluCI	AATT	5 cut(s)	465, 818, 888, 968, 988
MluNI	TGGCCA	1 cut(s)	480
MlyI	GAGTC	3 cut(s)	701, 759, 864
MmeI	TCCRAC	1 cut(s)	237
Mox20I	TGGCCA	1 cut(s)	480
MroXI	GAANNNNTTC	1 cut(s)	819
MscI	TGGCCA	1 cut(s)	480
MseI	TTAA	1 cut(s)	722
MslI	CAYNNNNRTG	1 cut(s)	276
Msp20I	TGGCCA	1 cut(s)	480
MspI	CCGG	2 cut(s)	206, 254
MspR9I	CCNGG	2 cut(s)	207, 1035
MunI	CAATTG	2 cut(s)	465, 888
MvaI	CCWGG	1 cut(s)	1035
MwoI	GCNNNNNNNGC	5 cut(s)	107, 120, 308, 524, 1054
NciI	CCSGG	1 cut(s)	207
NcoI	CCATGG	1 cut(s)	345
NdeI	CATATG	1 cut(s)	597
NdeII	GATC	2 cut(s)	118, 391
NlaIII	CATG	8 cut(s)	230, 275, 349, 365, 412, 512, 944, 1022
NlaIV	GGNNCC	2 cut(s)	211, 252
NspI	RCATGY	2 cut(s)	512, 944
PaeI	GCATGC	1 cut(s)	944
PceI	AGGCCT	1 cut(s)	807
PdmI	GAANNNNTTC	1 cut(s)	819
PfeI	GAWTC	7 cut(s)	5, 44, 452, 592, 656, 734, 1030
PflFI	GACNNNGTC	1 cut(s)	1041
PflMI	CCANNNNNTGG	2 cut(s)	487, 919
PfoI	TCCNGGA	1 cut(s)	1033
PkrI	GCNGC	5 cut(s)	75, 78, 109, 157, 517
Ple19I	CGATCG	1 cut(s)	121
PleI	GAGTC	3 cut(s)	700, 759, 864
PpsI	GAGTC	3 cut(s)	700, 759, 864
Psp6I	CCWGG	1 cut(s)	1033
PspFI	CCCAGC	3 cut(s)	124, 542, 1053
PspGI	CCWGG	1 cut(s)	1033
PspN4I	GGNNCC	2 cut(s)	211, 252
PspPI	GGNCC	2 cut(s)	251, 1013
PstNI	CAGNNNCTG	2 cut(s)	503, 713
PsyI	GACNNNGTC	1 cut(s)	1041
PvuI	CGATCG	1 cut(s)	121
RsaI	GTAC	2 cut(s)	711, 960
RsaNI	GTAC	2 cut(s)	710, 959
RseI	CAYNNNNRTG	1 cut(s)	276
SaqAI	TTAA	1 cut(s)	722
SatI	GCNGC	5 cut(s)	74, 77, 108, 156, 516
Sau3AI	GATC	2 cut(s)	118, 391
Sau96I	GGNCC	2 cut(s)	251, 1013
SchI	GAGTC	3 cut(s)	701, 759, 864
ScrFI	CCNGG	2 cut(s)	207, 1035
SduI	GDGCHC	2 cut(s)	212, 763
SfaNI	GCATC	1 cut(s)	634
SinI	GGWCC	1 cut(s)	251
SmiMI	CAYNNNNRTG	1 cut(s)	276
SmlI	CTYRAG	2 cut(s)	333, 352
SmoI	CTYRAG	2 cut(s)	333, 352
SphI	GCATGC	1 cut(s)	944
Sse9I	AATT	5 cut(s)	465, 818, 888, 968, 988
SseBI	AGGCCT	1 cut(s)	807
SsiI	CCGC	5 cut(s)	74, 77, 99, 108, 112
SspI	AATATT	1 cut(s)	785
SspMI	CTAG	1 cut(s)	534
StuI	AGGCCT	1 cut(s)	807
StyD4I	CCNGG	2 cut(s)	205, 1033
StyI	CCWWGG	1 cut(s)	345
TaaI	ACNGT	3 cut(s)	485, 664, 1007
TaiI	ACGT	1 cut(s)	222
TaqI	TCGA	4 cut(s)	180, 659, 768, 873
TaqII	GACCGA	1 cut(s)	882
TasI	AATT	5 cut(s)	465, 818, 888, 968, 988
TauI	GCSGC	3 cut(s)	76, 79, 110
TfiI	GAWTC	7 cut(s)	5, 44, 452, 592, 656, 734, 1030
Tru1I	TTAA	1 cut(s)	722
Tru9I	TTAA	1 cut(s)	722
TseI	GCWGC	2 cut(s)	155, 515
TspDTI	ATGAA	9 cut(s)	215, 260, 285, 393, 584, 816, 816, 981, 982
Tth111I	GACNNNGTC	1 cut(s)	1041
Van91I	CCANNNNNTGG	2 cut(s)	487, 919
VpaK11BI	GGWCC	1 cut(s)	251
XagI	CCTNNNNNAGG	1 cut(s)	29
XapI	RAATTY	3 cut(s)	818, 968, 988
XceI	RCATGY	2 cut(s)	512, 944
XmnI	GAANNNNTTC	1 cut(s)	819
XspI	CTAG	1 cut(s)	534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.