Rroxscaffold_3G00228820

Protein phosphatase methylesterase 1

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
13204358 .. 13212089
7732 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00228820.1

Sequence Viewer

Length: 1281 bp
ATGTTTTCCAATGGCGGCGATGTCGGCTTGAGTTTTTTAGGTCCGGGATGGGTGGCCTCCCTCTTTGGACTCGACGTGTTGGATCCTCTTGGCACTGGGAGGCCTCAACTTCCTTCTTTATGTTTCGGGGGCACACTATCGGTGTTGCTTTCGAGCCTCCCGCGATGTGACTTCGACTGTGTATCCCATCAACTTGATCGTCACGACGGCCATGGATTCTTCAAACCTCGCTTCCCTTCCCGAGGACACCCCCGAATCCAATCAACCCCCCACCACCACCAACAGCCGCCACCCCAACCCCGTCCTCTCTCCGCCTTCGCTGCCCGCCCCGATCGCCCAGCCACCCAGAGTAGCTCGCAAAAGTTCGCCGCTTTAGATTGGAAGGACTATTTCGACAAAGAAGATGATATTTCCATTCCGGGCTCCGACGATGTTTTTCATGTATATATGGCAGGAACAGAGGGTCCGGTTGTGTTTTGCCTTCATGGAGGTGGCTACTCAGGGCTTTCATTTGCCTTGTCAGCAAAGCAAATCAAGGAGAAGGCTCGAGTAGTTGCCATGGACTTGAGAGGACATGGAAGGTCGATGACTGAAAATGAGACTGATCTTTCTATTGAGACCATGTGCAATGATGTTGAGGCTGTTCTGAAAGCAATGTATGGAGATTCCCCTCCTGCAATTGTGCTTGTTGGCCACAGTATGGGAGGGTCAGTAGCTGTGCATGTTGCTGCAAGAAAAGCATTCCCTAGCTTGGCTGGGCTGGTTGTTGTAGATGTTGTTGAGGGAACAGCAATGGCTTCATTGATTCATATGCAAAAAATCCTATCAGGCAGGACGCATCATTTTTCAAGCATTGAAAAAGCGATAGAATCGACTGTAAAGGGAGGCTCTTTGAGAAACATTGAGTCTGCTCGTGTATCAGTACCTGCCACATTAAAGTATGATGATTCAAAGAAATGTTACATTTACAGAGCACGACTTGAAGAAACAGAACAATATTGGAAAAGCTGGTATGAAGGCCTTTCTGAAAAATTTCTTTCATCTCCTGTTCCAAAGCTCCTGCTTTTAGCTGGAACAGACAGACTCGACAGAACTCTGACAATTGGTCAAATGCAAGGCAAGTTCCAAATGGTGGTTGTCAGACATACTGGGCATGCCATACAAGAAGATGTACCTGATGAATTTGCAACACTAATAATAAATTTCATATCTCGTAACCGTATAGGCCCACATGGAGTTGAGATTCCAGGACTTCGTCGGCCATCCCAGCCCAAACCTTGA

Protein Analysis

426

Amino Acids

46.59

Weight (kDa)

7.31

Isoelectric Point (pI)

44.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_1 PF00561 156 - 390 3.2e-19 alpha/beta hydrolase fold
Hydrolase_4 PF12146 157 - 256 1.2e-12 Serine aminopeptidase, S33
Abhydrolase_6 PF12697 158 - 397 1e-25 Alpha/beta hydrolase family
Thioesterase PF00975 158 - 245 4.7e-07 Thioesterase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012939)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 934
AccB7I CCANNNNNTGG 2 cut(s) 700, 1132
AccII CGCG 1 cut(s) 163
AciI CCGC 6 cut(s) 15, 161, 287, 312, 325, 369
AclWI GGATC 2 cut(s) 77, 90
AcoI YGGCCR 3 cut(s) 208, 691, 1259
AcsI RAATTY 3 cut(s) 1031, 1181, 1201
AfaI GTAC 2 cut(s) 924, 1173
AfiI CCNNNNNNNGG 4 cut(s) 242, 700, 751, 1132
AflIII ACRYGT 1 cut(s) 75
AgsI TTSAA 5 cut(s) 223, 849, 857, 951, 983
AhdI GACNNNNNGTC 1 cut(s) 1104
AjiI CACGTC 1 cut(s) 76
AjnI CCWGG 1 cut(s) 1246
AloI GAACNNNNNNTCC 2 cut(s) 448, 480
AluBI AGCT 6 cut(s) 354, 716, 750, 1008, 1057, 1070
AluI AGCT 6 cut(s) 354, 716, 750, 1008, 1057, 1070
Alw21I GWGCWC 1 cut(s) 976
Alw26I GTCTC 2 cut(s) 593, 611
AlwI GGATC 2 cut(s) 77, 90
AlwNI CAGNNNCTG 2 cut(s) 716, 926
Ama87I CYCGRG 2 cut(s) 240, 546
AoxI GGCC 7 cut(s) 54, 101, 208, 691, 1018, 1225, 1259
ApeKI GCWGC 2 cut(s) 320, 728
ApoI RAATTY 3 cut(s) 1031, 1181, 1201
Asp700I GAANNNNTTC 1 cut(s) 1032
AspS9I GGNCC 3 cut(s) 41, 464, 1226
AsuC2I CCSGG 2 cut(s) 45, 420
AvaI CYCGRG 2 cut(s) 240, 546
AvaII GGWCC 2 cut(s) 41, 464
BaeGI GKGCMC 1 cut(s) 134
BalI TGGCCA 1 cut(s) 693
BamHI GGATCC 1 cut(s) 82
BanII GRGCYC 1 cut(s) 425
BauI CACGAG 1 cut(s) 912
Bbv12I GWGCWC 1 cut(s) 976
BbvI GCAGC 2 cut(s) 307, 715
BccI CCATC 3 cut(s) 42, 195, 1270
BceAI ACGGC 1 cut(s) 223
BciT130I CCWGG 1 cut(s) 1248
BciVI GTATCC 1 cut(s) 193
BcnI CCSGG 2 cut(s) 45, 420
BcoDI GTCTC 2 cut(s) 593, 611
BfaI CTAG 1 cut(s) 747
BfuAI ACCTGC 1 cut(s) 934
BfuI GTATCC 1 cut(s) 193
BisI GCNGC 5 cut(s) 16, 287, 321, 369, 729
BlsI GCNGC 5 cut(s) 17, 288, 322, 370, 730
Bme1390I CCNGG 3 cut(s) 45, 420, 1248
Bme18I GGWCC 2 cut(s) 41, 464
BmeRI GACNNNNNGTC 1 cut(s) 1104
BmeT110I CYCGRG 2 cut(s) 240, 546
BmgBI CACGTC 1 cut(s) 76
BmgT120I GGNCC 3 cut(s) 41, 464, 1226
BmiI GGNNCC 3 cut(s) 84, 424, 465
BmrFI CCNGG 3 cut(s) 45, 420, 1248
BmrI ACTGGG 2 cut(s) 105, 1158
BmsI GCATC 1 cut(s) 847
BmuI ACTGGG 2 cut(s) 105, 1158
BpuEI CTTGAG 2 cut(s) 49, 586
BpuMI CCSGG 2 cut(s) 45, 420
BsaI GGTCTC 1 cut(s) 611
BsaJI CCNNGG 3 cut(s) 211, 241, 558
BsaWI WCCGGW 1 cut(s) 466
BsaXI ACNNNNNCTCC 2 cut(s) 696, 726
Bsc4I CCNNNNNNNGG 4 cut(s) 242, 700, 751, 1132
Bse1I ACTGG 2 cut(s) 100, 1153
Bse3DI GCAATG 3 cut(s) 634, 660, 798
BseBI CCWGG 1 cut(s) 1248
BseDI CCNNGG 3 cut(s) 211, 241, 558
BseGI GGATG 2 cut(s) 53, 1262
BseLI CCNNNNNNNGG 4 cut(s) 242, 700, 751, 1132
BseMI GCAATG 3 cut(s) 634, 660, 798
BseMII CTCAG 1 cut(s) 513
BseNI ACTGG 2 cut(s) 100, 1153
BseSI GKGCMC 1 cut(s) 134
BseXI GCAGC 2 cut(s) 307, 715
BseYI CCCAGC 3 cut(s) 337, 755, 1266
Bsh1236I CGCG 1 cut(s) 163
Bsh1285I CGRYCG 1 cut(s) 334
BshFI GGCC 7 cut(s) 56, 103, 210, 693, 1020, 1227, 1261
BsiEI CGRYCG 1 cut(s) 334
BsiHKAI GWGCWC 1 cut(s) 976
BsiHKCI CYCGRG 2 cut(s) 240, 546
BsiSI CCGG 3 cut(s) 44, 419, 467
BslI CCNNNNNNNGG 4 cut(s) 242, 700, 751, 1132
BsmAI GTCTC 2 cut(s) 593, 611
BsmI GAATGC 1 cut(s) 740
BsnI GGCC 7 cut(s) 56, 103, 210, 693, 1020, 1227, 1261
Bso31I GGTCTC 1 cut(s) 611
BsoBI CYCGRG 2 cut(s) 240, 546
Bsp1286I GDGCHC 3 cut(s) 134, 425, 976
Bsp143I GATC 4 cut(s) 82, 196, 331, 604
Bsp19I CCATGG 2 cut(s) 211, 558
BspACI CCGC 6 cut(s) 15, 161, 287, 312, 325, 369
BspANI GGCC 7 cut(s) 56, 103, 210, 693, 1020, 1227, 1261
BspCNI CTCAG 1 cut(s) 512
BspFNI CGCG 1 cut(s) 163
BspLI GGNNCC 3 cut(s) 84, 424, 465
BspMI ACCTGC 1 cut(s) 934
BspPI GGATC 2 cut(s) 77, 90
BspTNI GGTCTC 1 cut(s) 611
BsrDI GCAATG 3 cut(s) 634, 660, 798
BsrI ACTGG 2 cut(s) 100, 1153
BssECI CCNNGG 3 cut(s) 211, 241, 558
BssMI GATC 4 cut(s) 82, 196, 331, 604
BssSI CACGAG 1 cut(s) 912
BssT1I CCWWGG 2 cut(s) 211, 558
Bst2BI CACGAG 1 cut(s) 912
Bst2UI CCWGG 1 cut(s) 1248
Bst4CI ACNGT 4 cut(s) 179, 698, 877, 1220
BstC8I GCNNGC 3 cut(s) 325, 356, 1155
BstDEI CTNAG 1 cut(s) 499
BstDSI CCRYGG 2 cut(s) 211, 558
BstENI CCTNNNNNAGG 1 cut(s) 240
BstF5I GGATG 2 cut(s) 53, 1262
BstFNI CGCG 1 cut(s) 163
BstKTI GATC 4 cut(s) 85, 199, 334, 607
BstMAI GTCTC 2 cut(s) 593, 611
BstMBI GATC 4 cut(s) 82, 196, 331, 604
BstMCI CGRYCG 1 cut(s) 334
BstMWI GCNNNNNNNGC 6 cut(s) 24, 320, 333, 521, 737, 1267
BstNI CCWGG 1 cut(s) 1248
BstNSI RCATGY 2 cut(s) 725, 1157
BstSCI CCNGG 3 cut(s) 43, 418, 1246
BstSLI GKGCMC 1 cut(s) 134
BstUI CGCG 1 cut(s) 163
BstV1I GCAGC 2 cut(s) 307, 715
BstX2I RGATCY 1 cut(s) 82
BstYI RGATCY 1 cut(s) 82
BsuI GTATCC 1 cut(s) 193
BsuRI GGCC 7 cut(s) 56, 103, 210, 693, 1020, 1227, 1261
BtgI CCRYGG 2 cut(s) 211, 558
BtgZI GCGATG 2 cut(s) 33, 178
BtrI CACGTC 1 cut(s) 76
BtsCI GGATG 2 cut(s) 53, 1262
BtsIMutI CAGTG 1 cut(s) 93
BveI ACCTGC 1 cut(s) 934
Cac8I GCNNGC 3 cut(s) 325, 356, 1155
CaiI CAGNNNCTG 2 cut(s) 716, 926
Cfr13I GGNCC 3 cut(s) 41, 464, 1226
CseI GACGC 1 cut(s) 844
Csp6I GTAC 2 cut(s) 923, 1172
CviAII CATG 9 cut(s) 212, 440, 485, 559, 575, 622, 722, 1154, 1232
CviQI GTAC 2 cut(s) 923, 1172
DdeI CTNAG 1 cut(s) 499
DpnI GATC 4 cut(s) 84, 198, 333, 606
DpnII GATC 4 cut(s) 82, 196, 331, 604
DriI GACNNNNNGTC 1 cut(s) 1104
EaeI YGGCCR 3 cut(s) 208, 691, 1259
Eam1105I GACNNNNNGTC 1 cut(s) 1104
EciI GGCGGA 1 cut(s) 301
Eco130I CCWWGG 2 cut(s) 211, 558
Eco147I AGGCCT 2 cut(s) 103, 1020
Eco24I GRGCYC 1 cut(s) 425
Eco31I GGTCTC 1 cut(s) 611
Eco47I GGWCC 2 cut(s) 41, 464
Eco88I CYCGRG 2 cut(s) 240, 546
EcoNI CCTNNNNNAGG 1 cut(s) 240
EcoRII CCWGG 1 cut(s) 1246
EcoT14I CCWWGG 2 cut(s) 211, 558
EcoT38I GRGCYC 1 cut(s) 425
ErhI CCWWGG 2 cut(s) 211, 558
FaeI CATG 9 cut(s) 215, 443, 488, 562, 578, 625, 725, 1157, 1235
FatI CATG 9 cut(s) 211, 439, 484, 558, 574, 621, 721, 1153, 1231
FauI CCCGC 2 cut(s) 168, 332
FauNDI CATATG 1 cut(s) 810
Fnu4HI GCNGC 5 cut(s) 16, 287, 321, 369, 729
FokI GGATG 2 cut(s) 60, 1249
FriOI GRGCYC 1 cut(s) 425
Fsp4HI GCNGC 5 cut(s) 16, 287, 321, 369, 729
FspBI CTAG 1 cut(s) 747
GluI GCNGC 5 cut(s) 16, 287, 321, 369, 729
GsaI CCCAGC 3 cut(s) 341, 759, 1270
HaeIII GGCC 7 cut(s) 56, 103, 210, 693, 1020, 1227, 1261
HapII CCGG 3 cut(s) 44, 419, 467
HgaI GACGC 1 cut(s) 844
Hin1II CATG 9 cut(s) 215, 443, 488, 562, 578, 625, 725, 1157, 1235
HpaII CCGG 3 cut(s) 44, 419, 467
Hpy188I TCNGA 5 cut(s) 427, 648, 1027, 1098, 1142
Hpy188III TCNNGA 2 cut(s) 203, 240
Hpy99I CGWCG 4 cut(s) 77, 209, 431, 1260
HpyAV CCTTC 8 cut(s) 123, 246, 325, 376, 491, 535, 573, 1010
HpyCH4III ACNGT 4 cut(s) 179, 698, 877, 1220
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 7 cut(s) 627, 677, 721, 731, 814, 1114, 1187
HpyF10VI GCNNNNNNNGC 6 cut(s) 24, 320, 333, 521, 737, 1267
HpyF3I CTNAG 1 cut(s) 499
HpySE526I ACGT 1 cut(s) 75
Hsp92II CATG 9 cut(s) 215, 443, 488, 562, 578, 625, 725, 1157, 1235
Kzo9I GATC 4 cut(s) 82, 196, 331, 604
LmnI GCTCC 2 cut(s) 428, 1062
Lsp1109I GCAGC 2 cut(s) 307, 715
LweI GCATC 1 cut(s) 847
MaeI CTAG 1 cut(s) 747
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 4 cut(s) 167, 200, 959, 1214
MalI GATC 4 cut(s) 84, 198, 333, 606
MboI GATC 4 cut(s) 82, 196, 331, 604
MboII GAAGA 4 cut(s) 211, 413, 995, 1178
MfeI CAATTG 2 cut(s) 678, 1101
MflI RGATCY 1 cut(s) 82
MhlI GDGCHC 3 cut(s) 134, 425, 976
MlsI TGGCCA 1 cut(s) 693
MluCI AATT 5 cut(s) 678, 1031, 1101, 1181, 1201
MluNI TGGCCA 1 cut(s) 693
MlyI GAGTC 3 cut(s) 63, 914, 1077
MmeI TCCRAC 2 cut(s) 60, 450
Mox20I TGGCCA 1 cut(s) 693
MroXI GAANNNNTTC 1 cut(s) 1032
MscI TGGCCA 1 cut(s) 693
MseI TTAA 1 cut(s) 935
MslI CAYNNNNRTG 1 cut(s) 489
Msp20I TGGCCA 1 cut(s) 693
MspI CCGG 3 cut(s) 44, 419, 467
MspR9I CCNGG 3 cut(s) 45, 420, 1248
MunI CAATTG 2 cut(s) 678, 1101
Mva1269I GAATGC 1 cut(s) 740
MvaI CCWGG 1 cut(s) 1248
MvnI CGCG 1 cut(s) 163
MwoI GCNNNNNNNGC 6 cut(s) 24, 320, 333, 521, 737, 1267
NciI CCSGG 2 cut(s) 45, 420
NcoI CCATGG 2 cut(s) 211, 558
NdeI CATATG 1 cut(s) 810
NdeII GATC 4 cut(s) 82, 196, 331, 604
NlaIII CATG 9 cut(s) 215, 443, 488, 562, 578, 625, 725, 1157, 1235
NlaIV GGNNCC 3 cut(s) 84, 424, 465
NmuCI GTSAC 2 cut(s) 167, 200
NspI RCATGY 2 cut(s) 725, 1157
PaeI GCATGC 1 cut(s) 1157
PaeR7I CTCGAG 1 cut(s) 546
PceI AGGCCT 2 cut(s) 103, 1020
PctI GAATGC 1 cut(s) 740
PdmI GAANNNNTTC 1 cut(s) 1032
PfeI GAWTC 7 cut(s) 216, 255, 665, 805, 869, 947, 1243
PflFI GACNNNGTC 1 cut(s) 1254
PflMI CCANNNNNTGG 2 cut(s) 700, 1132
PfoI TCCNGGA 2 cut(s) 43, 1246
PkrI GCNGC 5 cut(s) 17, 288, 322, 370, 730
Ple19I CGATCG 1 cut(s) 334
PleI GAGTC 3 cut(s) 63, 913, 1077
PpsI GAGTC 3 cut(s) 63, 913, 1077
Psp6I CCWGG 1 cut(s) 1246
PspFI CCCAGC 3 cut(s) 337, 755, 1266
PspGI CCWGG 1 cut(s) 1246
PspN4I GGNNCC 3 cut(s) 84, 424, 465
PspPI GGNCC 3 cut(s) 41, 464, 1226
PspXI VCTCGAGB 1 cut(s) 546
PstNI CAGNNNCTG 2 cut(s) 716, 926
PsuI RGATCY 1 cut(s) 82
PsyI GACNNNGTC 1 cut(s) 1254
PvuI CGATCG 1 cut(s) 334
RsaI GTAC 2 cut(s) 924, 1173
RsaNI GTAC 2 cut(s) 923, 1172
RseI CAYNNNNRTG 1 cut(s) 489
SaqAI TTAA 1 cut(s) 935
SatI GCNGC 5 cut(s) 16, 287, 321, 369, 729
Sau3AI GATC 4 cut(s) 82, 196, 331, 604
Sau96I GGNCC 3 cut(s) 41, 464, 1226
SchI GAGTC 3 cut(s) 63, 914, 1077
ScrFI CCNGG 3 cut(s) 45, 420, 1248
SduI GDGCHC 3 cut(s) 134, 425, 976
SfaNI GCATC 1 cut(s) 847
Sfr274I CTCGAG 1 cut(s) 546
SinI GGWCC 2 cut(s) 41, 464
SlaI CTCGAG 1 cut(s) 546
SmiMI CAYNNNNRTG 1 cut(s) 489
SmlI CTYRAG 3 cut(s) 28, 546, 565
SmoI CTYRAG 3 cut(s) 28, 546, 565
SphI GCATGC 1 cut(s) 1157
Sse9I AATT 5 cut(s) 678, 1031, 1101, 1181, 1201
SseBI AGGCCT 2 cut(s) 103, 1020
SsiI CCGC 6 cut(s) 15, 161, 287, 312, 325, 369
SspI AATATT 1 cut(s) 998
SspMI CTAG 1 cut(s) 747
StuI AGGCCT 2 cut(s) 103, 1020
StyD4I CCNGG 3 cut(s) 43, 418, 1246
StyI CCWWGG 2 cut(s) 211, 558
TaaI ACNGT 4 cut(s) 179, 698, 877, 1220
TaiI ACGT 1 cut(s) 78
TaqI TCGA 8 cut(s) 72, 152, 174, 393, 547, 584, 872, 1086
TasI AATT 5 cut(s) 678, 1031, 1101, 1181, 1201
TauI GCSGC 3 cut(s) 18, 289, 371
TfiI GAWTC 7 cut(s) 216, 255, 665, 805, 869, 947, 1243
Tru1I TTAA 1 cut(s) 935
Tru9I TTAA 1 cut(s) 935
TscAI CASTG 1 cut(s) 100
TseFI GTSAC 2 cut(s) 167, 200
TseI GCWGC 2 cut(s) 320, 728
Tsp45I GTSAC 2 cut(s) 167, 200
TspDTI ATGAA 9 cut(s) 428, 473, 498, 789, 797, 1029, 1029, 1194, 1195
TspRI CASTG 1 cut(s) 100
Tth111I GACNNNGTC 1 cut(s) 1254
Van91I CCANNNNNTGG 2 cut(s) 700, 1132
VpaK11BI GGWCC 2 cut(s) 41, 464
XagI CCTNNNNNAGG 1 cut(s) 240
XapI RAATTY 3 cut(s) 1031, 1181, 1201
XceI RCATGY 2 cut(s) 725, 1157
XhoI CTCGAG 1 cut(s) 546
XmnI GAANNNNTTC 1 cut(s) 1032
XspI CTAG 1 cut(s) 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.