Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004517

Physical Location & Seq

Genomic Coordinates Reverse (-)

6309393 .. 6310910

Gene Structure 1518 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G10110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGTCTGGGACTTCCAATTGCACCGTATACATAGGGAACGTTGACGAAAGAGTAAGCGATAGGGTTTTGTATGATATCATGATTCAAGCTGGTAGAGTAATCGATCTACACATTCCTCGTGATAAAGAAACTGATAAACCTAAAGGCTTTGCTTTCGCTGAGTATGAGACTGAAGAAATCGCCGATTACGCCGTTAAGCTTTTCTCTGGACTTGTTTCTCTCTACAATCGAACTTTGAAATTCGCTATATCTGGACAGGATAAGTTACAATCAAATTCTGCAAATTCCGGTCATCGAGCGAGACCTCAGTCTTTGGCTTTCGAGCATTCGGATAGAGCTGCGTATCATCACTTGGAGAGATTTTCGTCGCAATTGATTTCTCCACCTTCACCACTGCCTCTGGATTACACACAAGAACCACCTCCACCAGGAGTATCGAATGGAGCAAGTTTGGAGTATAGTAGAAGAGTTCTTGGTTCGGCACTAGATAGTATCAACCATTCAAGACCACGTCGCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

173

Amino Acids

19.34

Weight (kDa)

6.59

Isoelectric Point (pI)

49.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	9 - 79	1.2e-13	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0004517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10110
fragaria_vesca	FvH4_2g00580 FvH4_2g00580 FvH4_3g25440 FvH4_3g25440 FvH4_3g25440 FvH4_3g25440 FvH4_3g25440 FvH4_3g25440
malus_domestica	MD10G1003200.v1.1
prunus_persica	Prupe.8G005800_v2.0.a1 Prupe.8G005800_v2.0.a1 Prupe.8G005800_v2.0.a1 Prupe.8G005800_v2.0.a1 Prupe.8G005800_v2.0.a1
pyrus_communis	pycom10g00260
rosa_chinensis	RchiOBHm_Chr6g0251031 RchiOBHm_Chr6g0280021
rosa_laevigata	RLG00000015489
rosa_multiflora	Rmu_sc0006638.1_g000018
rosa_roxburghii	Rroxscaffold_5G00349710 Rroxscaffold_7G00217110
rosa_rugosa	Rorug05G0499500 Rorug05G0499600 Rorug05G0499700 Rorug06G0244900
rosa_samantha	Rh6AG007700 Rh6BG003300 Rh6CG005200 Rh6DG005500 Rh6DG235800
rosa_wichuraiana	Rw6G000870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	27
AclI	AACGTT	1 cut(s)	39
AcsI	RAATTY	3 cut(s)	239, 274, 283
AcuI	CTGAAG	1 cut(s)	192
AfiI	CCNNNNNNNGG	1 cut(s)	428
AgsI	TTSAA	3 cut(s)	86, 238, 504
AjiI	CACGTC	1 cut(s)	512
AjnI	CCWGG	1 cut(s)	427
AluBI	AGCT	3 cut(s)	89, 199, 338
AluI	AGCT	3 cut(s)	89, 199, 338
Alw26I	GTCTC	2 cut(s)	161, 295
ApeKI	GCWGC	1 cut(s)	338
ApoI	RAATTY	3 cut(s)	239, 274, 283
AsuHPI	GGTGA	1 cut(s)	381
BauI	CACGAG	1 cut(s)	117
BbvI	GCAGC	1 cut(s)	325
BceAI	ACGGC	1 cut(s)	176
BciT130I	CCWGG	1 cut(s)	429
BcoDI	GTCTC	2 cut(s)	161, 295
BfaI	CTAG	1 cut(s)	485
BisI	GCNGC	1 cut(s)	339
BlsI	GCNGC	1 cut(s)	340
Bme1390I	CCNGG	1 cut(s)	429
BmgBI	CACGTC	1 cut(s)	512
BmrFI	CCNGG	1 cut(s)	429
BoxI	GACNNNNGTC	1 cut(s)	307
Bsa29I	ATCGAT	1 cut(s)	102
BsaI	GGTCTC	1 cut(s)	295
BsaWI	WCCGGW	1 cut(s)	287
Bsc4I	CCNNNNNNNGG	1 cut(s)	428
BseBI	CCWGG	1 cut(s)	429
BseCI	ATCGAT	1 cut(s)	102
BseLI	CCNNNNNNNGG	1 cut(s)	428
BseMII	CTCAG	2 cut(s)	150, 320
BseXI	GCAGC	1 cut(s)	325
BshVI	ATCGAT	1 cut(s)	102
BsiSI	CCGG	1 cut(s)	288
BslFI	GGGAC	1 cut(s)	22
BslI	CCNNNNNNNGG	1 cut(s)	428
BsmAI	GTCTC	2 cut(s)	161, 295
BsmFI	GGGAC	1 cut(s)	22
BsmI	GAATGC	1 cut(s)	325
Bso31I	GGTCTC	1 cut(s)	295
Bsp143I	GATC	1 cut(s)	103
BspCNI	CTCAG	2 cut(s)	151, 319
BspDI	ATCGAT	1 cut(s)	102
BspHI	TCATGA	1 cut(s)	78
BspTNI	GGTCTC	1 cut(s)	295
BssMI	GATC	1 cut(s)	103
BssNAI	GTATAC	1 cut(s)	28
BssSI	CACGAG	1 cut(s)	117
Bst1107I	GTATAC	1 cut(s)	28
Bst2BI	CACGAG	1 cut(s)	117
Bst2UI	CCWGG	1 cut(s)	429
Bst4CI	ACNGT	1 cut(s)	25
Bst6I	CTCTTC	1 cut(s)	460
BstDEI	CTNAG	2 cut(s)	159, 306
BstENI	CCTNNNNNAGG	1 cut(s)	426
BstKTI	GATC	1 cut(s)	106
BstMAI	GTCTC	2 cut(s)	161, 295
BstMBI	GATC	1 cut(s)	103
BstMWI	GCNNNNNNNGC	1 cut(s)	188
BstNI	CCWGG	1 cut(s)	429
BstPAI	GACNNNNGTC	1 cut(s)	307
BstSCI	CCNGG	1 cut(s)	427
BstV1I	GCAGC	1 cut(s)	325
BstZ17I	GTATAC	1 cut(s)	28
Bsu15I	ATCGAT	1 cut(s)	102
BsuTUI	ATCGAT	1 cut(s)	102
BtrI	CACGTC	1 cut(s)	512
BtsI	GCAGTG	1 cut(s)	392
BtsIMutI	CAGTG	1 cut(s)	392
CciI	TCATGA	1 cut(s)	78
ClaI	ATCGAT	1 cut(s)	102
CviAII	CATG	1 cut(s)	79
CviJI	RGCY	5 cut(s)	89, 147, 199, 317, 338
CviKI_1	RGCY	5 cut(s)	89, 147, 199, 317, 338
DdeI	CTNAG	2 cut(s)	159, 306
DpnI	GATC	1 cut(s)	105
DpnII	GATC	1 cut(s)	103
Eam1104I	CTCTTC	1 cut(s)	460
EarI	CTCTTC	1 cut(s)	460
Eco31I	GGTCTC	1 cut(s)	295
Eco32I	GATATC	1 cut(s)	76
Eco57I	CTGAAG	1 cut(s)	192
EcoNI	CCTNNNNNAGG	1 cut(s)	426
EcoRII	CCWGG	1 cut(s)	427
EcoRV	GATATC	1 cut(s)	76
FaeI	CATG	1 cut(s)	82
FaiI	YATR	7 cut(s)	28, 32, 72, 80, 165, 248, 459
FaqI	GGGAC	1 cut(s)	22
FatI	CATG	1 cut(s)	78
FblI	GTMKAC	1 cut(s)	27
Fnu4HI	GCNGC	1 cut(s)	339
Fsp4HI	GCNGC	1 cut(s)	339
FspBI	CTAG	1 cut(s)	485
GluI	GCNGC	1 cut(s)	339
HapII	CCGG	1 cut(s)	288
Hin1II	CATG	1 cut(s)	82
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HindIII	AAGCTT	1 cut(s)	197
HinfI	GANTC	1 cut(s)	82
HpaII	CCGG	1 cut(s)	288
HphI	GGTGA	1 cut(s)	381
Hpy166II	GTNNAC	2 cut(s)	28, 43
Hpy188I	TCNGA	1 cut(s)	331
Hpy188III	TCNNGA	6 cut(s)	79, 119, 207, 252, 401, 504
Hpy8I	GTNNAC	2 cut(s)	28, 43
Hpy99I	CGWCG	2 cut(s)	370, 516
HpyAV	CCTTC	1 cut(s)	396
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4IV	ACGT	2 cut(s)	39, 511
HpyCH4V	TGCA	2 cut(s)	21, 281
HpyF10VI	GCNNNNNNNGC	1 cut(s)	188
HpyF3I	CTNAG	2 cut(s)	159, 306
HpySE526I	ACGT	2 cut(s)	39, 511
Hsp92II	CATG	1 cut(s)	82
Kzo9I	GATC	1 cut(s)	103
LmnI	GCTCC	1 cut(s)	443
LpnPI	CCDG	8 cut(s)	75, 192, 237, 242, 301, 386, 414, 441
Lsp1109I	GCAGC	1 cut(s)	325
MaeI	CTAG	1 cut(s)	485
MaeII	ACGT	2 cut(s)	39, 511
MaeIII	GTNAC	1 cut(s)	264
MalI	GATC	1 cut(s)	105
MboI	GATC	1 cut(s)	103
MboII	GAAGA	2 cut(s)	185, 477
MfeI	CAATTG	2 cut(s)	16, 371
MluCI	AATT	5 cut(s)	16, 239, 274, 283, 371
MnlI	CCTC	4 cut(s)	126, 315, 408, 432
MseI	TTAA	1 cut(s)	195
MspI	CCGG	1 cut(s)	288
MspR9I	CCNGG	1 cut(s)	429
MunI	CAATTG	2 cut(s)	16, 371
Mva1269I	GAATGC	1 cut(s)	325
MvaI	CCWGG	1 cut(s)	429
MwoI	GCNNNNNNNGC	1 cut(s)	188
NdeII	GATC	1 cut(s)	103
NlaIII	CATG	1 cut(s)	82
PagI	TCATGA	1 cut(s)	78
PctI	GAATGC	1 cut(s)	325
PfeI	GAWTC	1 cut(s)	82
PflFI	GACNNNGTC	1 cut(s)	510
PkrI	GCNGC	1 cut(s)	340
PshAI	GACNNNNGTC	1 cut(s)	307
Psp1406I	AACGTT	1 cut(s)	39
Psp6I	CCWGG	1 cut(s)	427
PspGI	CCWGG	1 cut(s)	427
PsyI	GACNNNGTC	1 cut(s)	510
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	1 cut(s)	339
Sau3AI	GATC	1 cut(s)	103
ScrFI	CCNGG	1 cut(s)	429
SetI	ASST	9 cut(s)	42, 91, 142, 201, 307, 340, 388, 424, 514
Sse9I	AATT	5 cut(s)	16, 239, 274, 283, 371
SspMI	CTAG	1 cut(s)	485
StyD4I	CCNGG	1 cut(s)	427
TaaI	ACNGT	1 cut(s)	25
TaiI	ACGT	2 cut(s)	42, 514
TaqI	TCGA	5 cut(s)	102, 229, 295, 321, 437
TasI	AATT	5 cut(s)	16, 239, 274, 283, 371
TfiI	GAWTC	1 cut(s)	82
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TscAI	CASTG	1 cut(s)	399
TseI	GCWGC	1 cut(s)	338
TspRI	CASTG	1 cut(s)	399
Tth111I	GACNNNGTC	1 cut(s)	510
XagI	CCTNNNNNAGG	1 cut(s)	426
XapI	RAATTY	3 cut(s)	239, 274, 283
XmiI	GTMKAC	1 cut(s)	27
XspI	CTAG	1 cut(s)	485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.