Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0004517

Physical Location & Seq

Genomic Coordinates Forward (+)

464537 .. 470557

Gene Structure 6021 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G005800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGTCCACGCACTCAAAATCCAGTGTTTACATAGGTAATTTGGACGAGCGAGTGAGTGAGAGAGTTTTGTATGATATTCTAATTCAGGCGGGGAGGTTAGTAGACCTACACATTCCTCGGGACAAGGAAACCGACAGACCTAAAGGTTATGCTTTTGCAGAGTATGAATCTGAGGACATTGCTGAGTATGCTGTTAGGCTCTTCTCTGGTCTTGTGACTCTCTACAATCGGACACTGAAGTTTGCGATTTCTGGGCGAGACAAGCCTTCACATAATACTCCTTCCACGGTCGCATCCGCATCTAGTTTTCCTCACAAACTGAGGTCTGCTCCATCACCAATTAACAGTATGGAAATATCTCCGAATTCCATTGGTTTATCAACACCCAGAATTTCAGACTTTCCACTAAACTATCCCCCAGTGCCCACTCCCCCTGGTGTAAATAAACAATCTAATGGGTATGGATTACCTAACAATGGCAACAATTACGAATATAGTCGAAGAGTTATTGGGGCAACTTTGGATACCATTAGTCGCTCTAGGTCACGCCGCCATGATATGAGCAACCCAATCTCCTATCCCTCTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

197

Amino Acids

21.82

Weight (kDa)

9.27

Isoelectric Point (pI)

60.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10110
fragaria_vesca	FvH4_2g00580 FvH4_2g00580 FvH4_3g25440 FvH4_3g25440 FvH4_3g25440 FvH4_3g25440 FvH4_3g25440 FvH4_3g25440
malus_domestica	MD10G1003200.v1.1
prunus_persica	Prupe.8G005800_v2.0.a1 Prupe.8G005800_v2.0.a1 Prupe.8G005800_v2.0.a1 Prupe.8G005800_v2.0.a1 Prupe.8G005800_v2.0.a1
pyrus_communis	pycom10g00260
rosa_chinensis	RchiOBHm_Chr6g0251031 RchiOBHm_Chr6g0280021
rosa_laevigata	RLG00000015489
rosa_multiflora	Rmu_sc0006638.1_g000018
rosa_roxburghii	Rroxscaffold_5G00349710 Rroxscaffold_7G00217110
rosa_rugosa	Rorug05G0499500 Rorug05G0499600 Rorug05G0499700 Rorug06G0244900
rosa_samantha	Rh6AG007700 Rh6BG003300 Rh6CG005200 Rh6DG005500 Rh6DG235800
rosa_wichuraiana	Rw6G000870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	102
AciI	CCGC	3 cut(s)	89, 297, 550
AcsI	RAATTY	2 cut(s)	364, 390
AcuI	CTGAAG	1 cut(s)	257
AfiI	CCNNNNNNNGG	1 cut(s)	476
AjnI	CCWGG	1 cut(s)	433
Alw26I	GTCTC	1 cut(s)	252
Ama87I	CYCGRG	1 cut(s)	117
ApoI	RAATTY	2 cut(s)	364, 390
AsuHPI	GGTGA	1 cut(s)	327
AvaI	CYCGRG	1 cut(s)	117
BaeGI	GKGCMC	1 cut(s)	426
BccI	CCATC	1 cut(s)	340
BciT130I	CCWGG	1 cut(s)	435
BciVI	GTATCC	1 cut(s)	517
BcoDI	GTCTC	1 cut(s)	252
BfaI	CTAG	3 cut(s)	303, 540, 589
BfuI	GTATCC	1 cut(s)	517
BisI	GCNGC	1 cut(s)	550
BlsI	GCNGC	1 cut(s)	551
Bme1390I	CCNGG	1 cut(s)	435
BmeT110I	CYCGRG	1 cut(s)	117
BmrFI	CCNGG	1 cut(s)	435
BmrI	ACTGGG	1 cut(s)	413
BmsI	GCATC	2 cut(s)	302, 308
BmuI	ACTGGG	1 cut(s)	413
BplI	GAGNNNNNCTC	2 cut(s)	313, 345
BsaJI	CCNNGG	3 cut(s)	116, 285, 433
BsaXI	ACNNNNNCTCC	2 cut(s)	557, 587
Bsc4I	CCNNNNNNNGG	1 cut(s)	476
Bse1I	ACTGG	2 cut(s)	21, 419
Bse3DI	GCAATG	1 cut(s)	177
BseBI	CCWGG	1 cut(s)	435
BseDI	CCNNGG	3 cut(s)	116, 285, 433
BseGI	GGATG	1 cut(s)	293
BseLI	CCNNNNNNNGG	1 cut(s)	476
BseMI	GCAATG	1 cut(s)	177
BseMII	CTCAG	3 cut(s)	162, 174, 311
BseNI	ACTGG	2 cut(s)	21, 419
BseSI	GKGCMC	1 cut(s)	426
Bsh1285I	CGRYCG	1 cut(s)	291
BsiEI	CGRYCG	1 cut(s)	291
BsiHKCI	CYCGRG	1 cut(s)	117
BslFI	GGGAC	1 cut(s)	134
BslI	CCNNNNNNNGG	1 cut(s)	476
BsmAI	GTCTC	1 cut(s)	252
BsmFI	GGGAC	1 cut(s)	134
BsoBI	CYCGRG	1 cut(s)	117
Bsp1286I	GDGCHC	1 cut(s)	426
BspACI	CCGC	3 cut(s)	89, 297, 550
BspCNI	CTCAG	3 cut(s)	163, 175, 312
BspQI	GCTCTTC	1 cut(s)	206
BsrDI	GCAATG	1 cut(s)	177
BsrI	ACTGG	2 cut(s)	21, 419
BssECI	CCNNGG	3 cut(s)	116, 285, 433
Bst2UI	CCWGG	1 cut(s)	435
Bst4CI	ACNGT	2 cut(s)	289, 347
Bst6I	CTCTTC	2 cut(s)	206, 496
BstDEI	CTNAG	3 cut(s)	171, 183, 320
BstDSI	CCRYGG	1 cut(s)	285
BstF5I	GGATG	1 cut(s)	293
BstMAI	GTCTC	1 cut(s)	252
BstMCI	CGRYCG	1 cut(s)	291
BstMWI	GCNNNNNNNGC	2 cut(s)	188, 262
BstNI	CCWGG	1 cut(s)	435
BstSCI	CCNGG	1 cut(s)	433
BstSLI	GKGCMC	1 cut(s)	426
BsuI	GTATCC	1 cut(s)	517
BtgI	CCRYGG	1 cut(s)	285
BtsCI	GGATG	1 cut(s)	293
BtsIMutI	CAGTG	3 cut(s)	28, 233, 426
CviAII	CATG	1 cut(s)	554
CviJI	RGCY	2 cut(s)	199, 265
CviKI_1	RGCY	2 cut(s)	199, 265
DdeI	CTNAG	3 cut(s)	171, 183, 320
Eam1104I	CTCTTC	2 cut(s)	206, 496
EarI	CTCTTC	2 cut(s)	206, 496
Eco57I	CTGAAG	1 cut(s)	257
Eco88I	CYCGRG	1 cut(s)	117
EcoRI	GAATTC	1 cut(s)	364
EcoRII	CCWGG	1 cut(s)	433
FaeI	CATG	1 cut(s)	557
FaqI	GGGAC	1 cut(s)	134
FatI	CATG	1 cut(s)	553
FauI	CCCGC	1 cut(s)	82
FblI	GTMKAC	1 cut(s)	102
Fnu4HI	GCNGC	1 cut(s)	550
FokI	GGATG	1 cut(s)	280
Fsp4HI	GCNGC	1 cut(s)	550
FspBI	CTAG	3 cut(s)	303, 540, 589
GluI	GCNGC	1 cut(s)	550
Hin1II	CATG	1 cut(s)	557
HinfI	GANTC	2 cut(s)	167, 217
HphI	GGTGA	1 cut(s)	327
Hpy166II	GTNNAC	3 cut(s)	6, 28, 103
Hpy188I	TCNGA	4 cut(s)	172, 231, 363, 397
Hpy188III	TCNNGA	1 cut(s)	119
Hpy8I	GTNNAC	3 cut(s)	6, 28, 103
HpyAV	CCTTC	2 cut(s)	276, 291
HpyCH4III	ACNGT	2 cut(s)	289, 347
HpyCH4V	TGCA	1 cut(s)	158
HpyF10VI	GCNNNNNNNGC	2 cut(s)	188, 262
HpyF3I	CTNAG	3 cut(s)	171, 183, 320
Hsp92II	CATG	1 cut(s)	557
LguI	GCTCTTC	1 cut(s)	206
LmnI	GCTCC	1 cut(s)	334
LpnPI	CCDG	8 cut(s)	34, 71, 192, 237, 400, 420, 432, 447
LweI	GCATC	2 cut(s)	302, 308
MaeI	CTAG	3 cut(s)	303, 540, 589
MaeIII	GTNAC	2 cut(s)	214, 543
MboII	GAAGA	2 cut(s)	193, 513
MhlI	GDGCHC	1 cut(s)	426
MluCI	AATT	6 cut(s)	37, 81, 339, 364, 390, 484
MlyI	GAGTC	1 cut(s)	211
MnlI	CCTC	5 cut(s)	87, 126, 166, 315, 321
MseI	TTAA	1 cut(s)	342
MspR9I	CCNGG	1 cut(s)	435
MvaI	CCWGG	1 cut(s)	435
MwoI	GCNNNNNNNGC	2 cut(s)	188, 262
NlaIII	CATG	1 cut(s)	557
NmuCI	GTSAC	2 cut(s)	214, 543
PciSI	GCTCTTC	1 cut(s)	206
PfeI	GAWTC	1 cut(s)	167
PkrI	GCNGC	1 cut(s)	551
PleI	GAGTC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	211
Psp6I	CCWGG	1 cut(s)	433
PspGI	CCWGG	1 cut(s)	433
SapI	GCTCTTC	1 cut(s)	206
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	1 cut(s)	550
SchI	GAGTC	1 cut(s)	211
ScrFI	CCNGG	1 cut(s)	435
SduI	GDGCHC	1 cut(s)	426
SetI	ASST	8 cut(s)	37, 98, 108, 142, 148, 326, 472, 545
SfaNI	GCATC	2 cut(s)	302, 308
Sse9I	AATT	6 cut(s)	37, 81, 339, 364, 390, 484
SsiI	CCGC	3 cut(s)	89, 297, 550
SspMI	CTAG	3 cut(s)	303, 540, 589
StyD4I	CCNGG	1 cut(s)	433
TaaI	ACNGT	2 cut(s)	289, 347
TaqI	TCGA	1 cut(s)	499
TasI	AATT	6 cut(s)	37, 81, 339, 364, 390, 484
TauI	GCSGC	1 cut(s)	552
TfiI	GAWTC	1 cut(s)	167
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TscAI	CASTG	3 cut(s)	28, 240, 426
TseFI	GTSAC	2 cut(s)	214, 543
Tsp45I	GTSAC	2 cut(s)	214, 543
TspDTI	ATGAA	1 cut(s)	180
TspRI	CASTG	3 cut(s)	28, 240, 426
XapI	RAATTY	2 cut(s)	364, 390
XmiI	GTMKAC	1 cut(s)	102
XspI	CTAG	3 cut(s)	303, 540, 589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.