Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004517

Physical Location & Seq

Genomic Coordinates Reverse (-)

68113408 .. 68116364

Gene Structure 2957 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0499700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGCTATTCCTGCGCTGGTTCCCTATTCCAATCCAGCTCAGCTCTCACTCAATCCATTTCAAACCCCAATTGCGTGTCTCCAGCTCACTCCACAACTCTGCCGCAACCGCAACGGATTCGGCCTCGCTCCAGCACGAGGTCAAAGTCAAGGAGTTTCCAAATGACGGATTTGCCCCCGTCCGAGAAGAAGAGGCGTTGCCGGCGGGTCTGCGGCTGGAGGCGATGCCGAGGCACGTGGCGGTGATAATGGACGGGAACGTGAGGTGGGCCAGGCGGAGAGGGCTGCCGTCCTGGTCGGGTCACGAGGCGGGTGCCCGGGCGCTGAGGGAGTTCGTTGACCTCAGCCGGAAATGGGGGATTCGGGTTCTCACTGTCTTCGCGTTTTCGTGTGATAACTGGGTTCGCCCAAAGATGGAGGTTGATTTTTTGATGAGTTTGTTTGAGGGGGTGATCAAGTCAGAGATCAACAATCTTGACAGGGAAGGCATTCGAATATCAGTCATTGGGGATTCGTCAAAGCTCCCTGATTCTTTACAGAAACTGATAAGTGAAGCAGAGGAGAAAACAAAGGACAACTTTAGACTCCAACTTATTGTAGCAGTGAGCTACAGTGGGAAATATGATGTAGTGCAAGCATGTAAAAGCATTTCTCAGAAGGTAAAAGACGGCCTCATTCAAGTTGAAGATATCAATGAAAGCGTCATCGAGCAGGAACTGGAAACTAATTGTACTGAGTTTCCCTACCCTGATCTACTCATCCGAACCGGTGGCGAACTTAGAGTCAGTAACTTCTTGTTATGGCAGTTGGCCTACACAGAACTTTTCTTCGTACCAGCTCTTTGGCCTGATTTTGGGAAGGCCGAGTTTGCAGAGGCCTTGATTTCATTTCAGCAAAGGCAGAGACGTTATGGTAGACGAGATTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

308

Amino Acids

35.17

Weight (kDa)

6.35

Isoelectric Point (pI)

54.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prenyltransf	PF01255	82 - 304	1.2e-79	Putative undecaprenyl diphosphate synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10110
fragaria_vesca	FvH4_2g00580 FvH4_2g00580 FvH4_3g25440 FvH4_3g25440 FvH4_3g25440 FvH4_3g25440 FvH4_3g25440 FvH4_3g25440
malus_domestica	MD10G1003200.v1.1
prunus_persica	Prupe.8G005800_v2.0.a1 Prupe.8G005800_v2.0.a1 Prupe.8G005800_v2.0.a1 Prupe.8G005800_v2.0.a1 Prupe.8G005800_v2.0.a1
pyrus_communis	pycom10g00260
rosa_chinensis	RchiOBHm_Chr6g0251031 RchiOBHm_Chr6g0280021
rosa_laevigata	RLG00000015489
rosa_multiflora	Rmu_sc0006638.1_g000018
rosa_roxburghii	Rroxscaffold_5G00349710 Rroxscaffold_7G00217110
rosa_rugosa	Rorug05G0499500 Rorug05G0499600 Rorug05G0499700 Rorug06G0244900
rosa_samantha	Rh6AG007700 Rh6BG003300 Rh6CG005200 Rh6DG005500 Rh6DG235800
rosa_wichuraiana	Rw6G000870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	311
AccI	GTMKAC	1 cut(s)	913
AccII	CGCG	1 cut(s)	380
AciI	CCGC	7 cut(s)	102, 108, 203, 211, 239, 274, 308
AcvI	CACGTG	1 cut(s)	235
AfaI	GTAC	2 cut(s)	730, 831
AfiI	CCNNNNNNNGG	5 cut(s)	136, 164, 352, 412, 851
AgeI	ACCGGT	1 cut(s)	764
AgsI	TTSAA	3 cut(s)	61, 677, 683
AjnI	CCWGG	2 cut(s)	269, 290
AluBI	AGCT	6 cut(s)	37, 42, 84, 520, 606, 836
AluI	AGCT	6 cut(s)	37, 42, 84, 520, 606, 836
Alw26I	GTCTC	2 cut(s)	82, 895
AlwNI	CAGNNNCTG	2 cut(s)	541, 715
Ama87I	CYCGRG	1 cut(s)	315
AoxI	GGCC	7 cut(s)	120, 267, 667, 807, 842, 858, 873
ApeKI	GCWGC	1 cut(s)	283
ArsI	GACNNNNNNTTYG	2 cut(s)	765, 797
AsiGI	ACCGGT	1 cut(s)	764
Asp700I	GAANNNNTTC	1 cut(s)	486
AspLEI	GCGC	2 cut(s)	15, 322
AspS9I	GGNCC	1 cut(s)	267
AsuC2I	CCSGG	2 cut(s)	316, 317
AsuHPI	GGTGA	2 cut(s)	253, 460
AsuII	TTCGAA	1 cut(s)	490
AvaI	CYCGRG	1 cut(s)	315
BaeGI	GKGCMC	1 cut(s)	316
BanI	GGYRCC	1 cut(s)	311
BauI	CACGAG	2 cut(s)	134, 302
BbrPI	CACGTG	1 cut(s)	235
BbsI	GAAGAC	1 cut(s)	367
BbvCI	CCTCAGC	2 cut(s)	323, 341
BbvI	GCAGC	1 cut(s)	270
BccI	CCATC	1 cut(s)	406
BceAI	ACGGC	2 cut(s)	271, 682
BcgI	CGANNNNNNTGC	4 cut(s)	99, 133, 293, 327
BciT130I	CCWGG	2 cut(s)	271, 292
BclI	TGATCA	1 cut(s)	450
BcnI	CCSGG	2 cut(s)	316, 317
BcoDI	GTCTC	2 cut(s)	82, 895
BfmI	CTRYAG	1 cut(s)	607
BfoI	RGCGCY	1 cut(s)	323
BisI	GCNGC	3 cut(s)	102, 212, 284
BlpI	GCTNAGC	1 cut(s)	38
BlsI	GCNGC	3 cut(s)	103, 213, 285
Bme1390I	CCNGG	4 cut(s)	271, 292, 316, 317
BmeT110I	CYCGRG	1 cut(s)	315
BmgT120I	GGNCC	1 cut(s)	267
BmiI	GGNNCC	2 cut(s)	20, 313
BmrFI	CCNGG	4 cut(s)	271, 292, 316, 317
BmrI	ACTGGG	1 cut(s)	406
BmsI	GCATC	1 cut(s)	213
BmuI	ACTGGG	1 cut(s)	406
BpiI	GAAGAC	1 cut(s)	367
BpmI	CTGGAG	3 cut(s)	64, 113, 236
Bpu10I	CCTNAGC	2 cut(s)	323, 341
Bpu1102I	GCTNAGC	1 cut(s)	38
Bpu14I	TTCGAA	1 cut(s)	490
BpuMI	CCSGG	2 cut(s)	316, 317
BsaAI	YACGTR	1 cut(s)	235
BsaJI	CCNNGG	2 cut(s)	227, 315
BsaWI	WCCGGW	1 cut(s)	764
Bsc4I	CCNNNNNNNGG	5 cut(s)	136, 164, 352, 412, 851
Bse118I	RCCGGY	2 cut(s)	199, 764
Bse1I	ACTGG	2 cut(s)	401, 720
BseBI	CCWGG	2 cut(s)	271, 292
BseDI	CCNNGG	2 cut(s)	227, 315
BseGI	GGATG	1 cut(s)	756
BseLI	CCNNNNNNNGG	5 cut(s)	136, 164, 352, 412, 851
BseMII	CTCAG	5 cut(s)	52, 314, 355, 665, 723
BseNI	ACTGG	2 cut(s)	401, 720
BseRI	GAGGAG	1 cut(s)	572
BseSI	GKGCMC	1 cut(s)	316
BseXI	GCAGC	1 cut(s)	270
Bsh1236I	CGCG	1 cut(s)	380
BshFI	GGCC	7 cut(s)	122, 269, 669, 809, 844, 860, 875
BshNI	GGYRCC	1 cut(s)	311
BshTI	ACCGGT	1 cut(s)	764
BsiHKCI	CYCGRG	1 cut(s)	315
BsiSI	CCGG	4 cut(s)	200, 316, 346, 765
BslI	CCNNNNNNNGG	5 cut(s)	136, 164, 352, 412, 851
BsmAI	GTCTC	2 cut(s)	82, 895
BsmBI	CGTCTC	1 cut(s)	895
BsmI	GAATGC	1 cut(s)	486
BsnI	GGCC	7 cut(s)	122, 269, 669, 809, 844, 860, 875
BsoBI	CYCGRG	1 cut(s)	315
Bsp119I	TTCGAA	1 cut(s)	490
Bsp1286I	GDGCHC	1 cut(s)	316
Bsp143I	GATC	3 cut(s)	450, 462, 748
Bsp1720I	GCTNAGC	1 cut(s)	38
BspACI	CCGC	7 cut(s)	102, 108, 203, 211, 239, 274, 308
BspANI	GGCC	7 cut(s)	122, 269, 669, 809, 844, 860, 875
BspCNI	CTCAG	5 cut(s)	51, 315, 354, 664, 724
BspFNI	CGCG	1 cut(s)	380
BspLI	GGNNCC	2 cut(s)	20, 313
BspT104I	TTCGAA	1 cut(s)	490
BspT107I	GGYRCC	1 cut(s)	311
BsrFI	RCCGGY	2 cut(s)	199, 764
BsrI	ACTGG	2 cut(s)	401, 720
BssAI	RCCGGY	2 cut(s)	199, 764
BssECI	CCNNGG	2 cut(s)	227, 315
BssMI	GATC	3 cut(s)	450, 462, 748
BssSI	CACGAG	2 cut(s)	134, 302
Bst2BI	CACGAG	2 cut(s)	134, 302
Bst2UI	CCWGG	2 cut(s)	271, 292
Bst4CI	ACNGT	2 cut(s)	373, 611
Bst6I	CTCTTC	1 cut(s)	183
BstBAI	YACGTR	1 cut(s)	235
BstBI	TTCGAA	1 cut(s)	490
BstC8I	GCNNGC	2 cut(s)	201, 633
BstDEI	CTNAG	6 cut(s)	38, 323, 341, 651, 732, 776
BstF5I	GGATG	1 cut(s)	756
BstFNI	CGCG	1 cut(s)	380
BstH2I	RGCGCY	1 cut(s)	323
BstHHI	GCGC	2 cut(s)	15, 322
BstKTI	GATC	3 cut(s)	453, 465, 751
BstMAI	GTCTC	2 cut(s)	82, 895
BstMBI	GATC	3 cut(s)	450, 462, 748
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 107, 200, 280, 866
BstNI	CCWGG	2 cut(s)	271, 292
BstNSI	RCATGY	1 cut(s)	639
BstSCI	CCNGG	4 cut(s)	269, 290, 314, 315
BstSFI	CTRYAG	1 cut(s)	607
BstSLI	GKGCMC	1 cut(s)	316
BstUI	CGCG	1 cut(s)	380
BstV1I	GCAGC	1 cut(s)	270
BstV2I	GAAGAC	1 cut(s)	367
BstXI	CCANNNNNNTGG	1 cut(s)	840
BsuRI	GGCC	7 cut(s)	122, 269, 669, 809, 844, 860, 875
BtgZI	GCGATG	1 cut(s)	236
BtsCI	GGATG	1 cut(s)	756
BtsI	GCAGTG	1 cut(s)	606
BtsIMutI	CAGTG	3 cut(s)	369, 606, 616
Cac8I	GCNNGC	2 cut(s)	201, 633
CaiI	CAGNNNCTG	2 cut(s)	541, 715
CfoI	GCGC	2 cut(s)	15, 322
Cfr10I	RCCGGY	2 cut(s)	199, 764
Cfr13I	GGNCC	1 cut(s)	267
Cfr9I	CCCGGG	1 cut(s)	315
CseI	GACGC	1 cut(s)	688
Csp6I	GTAC	2 cut(s)	729, 830
CspAI	ACCGGT	1 cut(s)	764
CviAII	CATG	1 cut(s)	636
CviQI	GTAC	2 cut(s)	729, 830
DdeI	CTNAG	6 cut(s)	38, 323, 341, 651, 732, 776
DpnI	GATC	3 cut(s)	452, 464, 750
DpnII	GATC	3 cut(s)	450, 462, 748
Eam1104I	CTCTTC	1 cut(s)	183
EarI	CTCTTC	1 cut(s)	183
EciI	GGCGGA	1 cut(s)	289
Eco147I	AGGCCT	1 cut(s)	875
Eco32I	GATATC	1 cut(s)	688
Eco72I	CACGTG	1 cut(s)	235
Eco88I	CYCGRG	1 cut(s)	315
EcoRII	CCWGG	2 cut(s)	269, 290
EcoRV	GATATC	1 cut(s)	688
Esp3I	CGTCTC	1 cut(s)	895
FaeI	CATG	1 cut(s)	639
FaiI	YATR	5 cut(s)	621, 637, 799, 909, 925
FalI	AAGNNNNNCTT	2 cut(s)	560, 592
FatI	CATG	1 cut(s)	635
FauI	CCCGC	2 cut(s)	196, 301
FbaI	TGATCA	1 cut(s)	450
FblI	GTMKAC	1 cut(s)	913
Fnu4HI	GCNGC	3 cut(s)	102, 212, 284
FokI	GGATG	1 cut(s)	743
Fsp4HI	GCNGC	3 cut(s)	102, 212, 284
GlaI	GCGC	2 cut(s)	14, 321
GluI	GCNGC	3 cut(s)	102, 212, 284
GsuI	CTGGAG	3 cut(s)	64, 113, 236
HaeII	RGCGCY	1 cut(s)	323
HaeIII	GGCC	7 cut(s)	122, 269, 669, 809, 844, 860, 875
HapII	CCGG	4 cut(s)	200, 316, 346, 765
HgaI	GACGC	1 cut(s)	688
HhaI	GCGC	2 cut(s)	15, 322
Hin1II	CATG	1 cut(s)	639
Hin6I	GCGC	2 cut(s)	13, 320
HinP1I	GCGC	2 cut(s)	13, 320
HincII	GTYRAC	1 cut(s)	337
HindII	GTYRAC	1 cut(s)	337
HinfI	GANTC	6 cut(s)	116, 358, 509, 527, 582, 780
HpaII	CCGG	4 cut(s)	200, 316, 346, 765
HphI	GGTGA	2 cut(s)	253, 460
Hpy166II	GTNNAC	2 cut(s)	337, 914
Hpy188I	TCNGA	4 cut(s)	182, 460, 654, 761
Hpy188III	TCNNGA	2 cut(s)	302, 473
Hpy8I	GTNNAC	2 cut(s)	337, 914
HpyAV	CCTTC	3 cut(s)	476, 649, 850
HpyCH4III	ACNGT	2 cut(s)	373, 611
HpyCH4IV	ACGT	3 cut(s)	234, 258, 904
HpyCH4V	TGCA	2 cut(s)	631, 869
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 107, 200, 280, 866
HpyF3I	CTNAG	6 cut(s)	38, 323, 341, 651, 732, 776
HpySE526I	ACGT	3 cut(s)	234, 258, 904
Hsp92II	CATG	1 cut(s)	639
HspAI	GCGC	2 cut(s)	13, 320
KroI	GCCGGC	1 cut(s)	199
KroNI	GCCGGC	1 cut(s)	201
Ksp22I	TGATCA	1 cut(s)	450
Kzo9I	GATC	3 cut(s)	450, 462, 748
LmnI	GCTCC	2 cut(s)	132, 525
Lsp1109I	GCAGC	1 cut(s)	270
LweI	GCATC	1 cut(s)	213
MaeII	ACGT	3 cut(s)	234, 258, 904
MaeIII	GTNAC	2 cut(s)	299, 785
MalI	GATC	3 cut(s)	452, 464, 750
MboI	GATC	3 cut(s)	450, 462, 748
MboII	GAAGA	5 cut(s)	197, 200, 367, 695, 817
MfeI	CAATTG	1 cut(s)	68
MhlI	GDGCHC	1 cut(s)	316
MluCI	AATT	2 cut(s)	68, 724
MlyI	GAGTC	2 cut(s)	576, 789
MmeI	TCCRAC	1 cut(s)	610
MroNI	GCCGGC	1 cut(s)	199
MroXI	GAANNNNTTC	1 cut(s)	486
MspI	CCGG	4 cut(s)	200, 316, 346, 765
MspR9I	CCNGG	4 cut(s)	271, 292, 316, 317
MunI	CAATTG	1 cut(s)	68
Mva1269I	GAATGC	1 cut(s)	486
MvaI	CCWGG	2 cut(s)	271, 292
MvnI	CGCG	1 cut(s)	380
MwoI	GCNNNNNNNGC	5 cut(s)	10, 107, 200, 280, 866
NaeI	GCCGGC	1 cut(s)	201
NciI	CCSGG	2 cut(s)	316, 317
NdeII	GATC	3 cut(s)	450, 462, 748
NgoMIV	GCCGGC	1 cut(s)	199
NlaIII	CATG	1 cut(s)	639
NlaIV	GGNNCC	2 cut(s)	20, 313
NmeAIII	GCCGAG	2 cut(s)	252, 886
NmuCI	GTSAC	1 cut(s)	299
NspI	RCATGY	1 cut(s)	639
NspV	TTCGAA	1 cut(s)	490
PceI	AGGCCT	1 cut(s)	875
PctI	GAATGC	1 cut(s)	486
PdiI	GCCGGC	1 cut(s)	201
PdmI	GAANNNNTTC	1 cut(s)	486
PfeI	GAWTC	4 cut(s)	116, 358, 509, 527
PinAI	ACCGGT	1 cut(s)	764
PkrI	GCNGC	3 cut(s)	103, 213, 285
PleI	GAGTC	2 cut(s)	576, 788
PmaCI	CACGTG	1 cut(s)	235
PmlI	CACGTG	1 cut(s)	235
PpsI	GAGTC	2 cut(s)	576, 788
Ppu21I	YACGTR	1 cut(s)	235
Psp6I	CCWGG	2 cut(s)	269, 290
PspCI	CACGTG	1 cut(s)	235
PspGI	CCWGG	2 cut(s)	269, 290
PspN4I	GGNNCC	2 cut(s)	20, 313
PspPI	GGNCC	1 cut(s)	267
PstNI	CAGNNNCTG	2 cut(s)	541, 715
RsaI	GTAC	2 cut(s)	730, 831
RsaNI	GTAC	2 cut(s)	729, 830
SatI	GCNGC	3 cut(s)	102, 212, 284
Sau3AI	GATC	3 cut(s)	450, 462, 748
Sau96I	GGNCC	1 cut(s)	267
SchI	GAGTC	2 cut(s)	576, 789
ScrFI	CCNGG	4 cut(s)	271, 292, 316, 317
SduI	GDGCHC	1 cut(s)	316
SfaNI	GCATC	1 cut(s)	213
SfcI	CTRYAG	1 cut(s)	607
SfuI	TTCGAA	1 cut(s)	490
SmaI	CCCGGG	1 cut(s)	317
SrfI	GCCCGGGC	1 cut(s)	317
Sse9I	AATT	2 cut(s)	68, 724
SseBI	AGGCCT	1 cut(s)	875
SsiI	CCGC	7 cut(s)	102, 108, 203, 211, 239, 274, 308
StuI	AGGCCT	1 cut(s)	875
StyD4I	CCNGG	4 cut(s)	269, 290, 314, 315
TaaI	ACNGT	2 cut(s)	373, 611
TaiI	ACGT	3 cut(s)	237, 261, 907
TaqI	TCGA	2 cut(s)	490, 705
TasI	AATT	2 cut(s)	68, 724
TatI	WGTACW	1 cut(s)	728
TauI	GCSGC	2 cut(s)	104, 214
TfiI	GAWTC	4 cut(s)	116, 358, 509, 527
TscAI	CASTG	3 cut(s)	376, 606, 616
TseFI	GTSAC	1 cut(s)	299
TseI	GCWGC	1 cut(s)	283
Tsp45I	GTSAC	1 cut(s)	299
TspDTI	ATGAA	2 cut(s)	708, 873
TspGWI	ACGGA	2 cut(s)	128, 180
TspMI	CCCGGG	1 cut(s)	315
TspRI	CASTG	3 cut(s)	376, 606, 616
XceI	RCATGY	1 cut(s)	639
XmaI	CCCGGG	1 cut(s)	315
XmiI	GTMKAC	1 cut(s)	913
XmnI	GAANNNNTTC	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.