Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004517

Physical Location & Seq

Genomic Coordinates Forward (+)

18332589 .. 18336323

Gene Structure 3735 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g25440.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGTTGAAAGACTGGTCGATGAATAAGACATTAATGCTTGGGTCGTATGTGTTTCTGGTTTCATCTCCTCTGACTTTTCATATTTGGATCAACATTGAACTACTTAGTTGTATTCTGTGTGTTGTTTTTAAGTTTTTCTTTCGTTTGACATTGCTACATGACATTGACAAGGAGACCGATAAGCCTAGAGGTTATGCTTTTGCAGAATATGAAACTGAGGAGATTGCTGAGTATGCTGTCAGGCTTTTCTCCGGTGTTGTCACTCTCTACAATCGAACACTCAGGTTTGCGACAAGCCTGCACCTAATGTTGCTTCTACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

108

Amino Acids

12.59

Weight (kDa)

6.26

Isoelectric Point (pI)

43.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	56 - 95	5.8e-06	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10110
fragaria_vesca	FvH4_2g00580 FvH4_2g00580 FvH4_3g25440 FvH4_3g25440 FvH4_3g25440 FvH4_3g25440 FvH4_3g25440 FvH4_3g25440
malus_domestica	MD10G1003200.v1.1
prunus_persica	Prupe.8G005800_v2.0.a1 Prupe.8G005800_v2.0.a1 Prupe.8G005800_v2.0.a1 Prupe.8G005800_v2.0.a1 Prupe.8G005800_v2.0.a1
pyrus_communis	pycom10g00260
rosa_chinensis	RchiOBHm_Chr6g0251031 RchiOBHm_Chr6g0280021
rosa_laevigata	RLG00000015489
rosa_multiflora	Rmu_sc0006638.1_g000018
rosa_roxburghii	Rroxscaffold_5G00349710 Rroxscaffold_7G00217110
rosa_rugosa	Rorug05G0499500 Rorug05G0499600 Rorug05G0499700 Rorug06G0244900
rosa_samantha	Rh6AG007700 Rh6BG003300 Rh6CG005200 Rh6DG005500 Rh6DG235800
rosa_wichuraiana	Rw6G000870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	95
AgsI	TTSAA	2 cut(s)	7, 98
Alw26I	GTCTC	1 cut(s)	167
AlwI	GGATC	1 cut(s)	95
AseI	ATTAAT	1 cut(s)	32
BcgI	CGANNNNNNTGC	2 cut(s)	280, 314
BcoDI	GTCTC	1 cut(s)	167
BfaI	CTAG	1 cut(s)	186
BfmI	CTRYAG	1 cut(s)	317
BsaI	GGTCTC	1 cut(s)	167
BsaWI	WCCGGW	1 cut(s)	251
Bse1I	ACTGG	1 cut(s)	17
Bse3DI	GCAATG	1 cut(s)	149
BseMI	GCAATG	1 cut(s)	149
BseMII	CTCAG	3 cut(s)	207, 219, 295
BseNI	ACTGG	1 cut(s)	17
BseRI	GAGGAG	2 cut(s)	57, 233
BsgI	GTGCAG	1 cut(s)	284
BsiSI	CCGG	1 cut(s)	252
BsmAI	GTCTC	1 cut(s)	167
Bso31I	GGTCTC	1 cut(s)	167
Bsp143I	GATC	1 cut(s)	87
BspCNI	CTCAG	3 cut(s)	208, 220, 294
BspPI	GGATC	1 cut(s)	95
BspTNI	GGTCTC	1 cut(s)	167
BsrDI	GCAATG	1 cut(s)	149
BsrI	ACTGG	1 cut(s)	17
BssMI	GATC	1 cut(s)	87
Bst4CI	ACNGT	1 cut(s)	321
BstC8I	GCNNGC	1 cut(s)	299
BstDEI	CTNAG	4 cut(s)	104, 216, 228, 281
BstKTI	GATC	1 cut(s)	90
BstMAI	GTCTC	1 cut(s)	167
BstMBI	GATC	1 cut(s)	87
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstSFI	CTRYAG	1 cut(s)	317
Cac8I	GCNNGC	1 cut(s)	299
CviAII	CATG	1 cut(s)	158
CviJI	RGCY	3 cut(s)	184, 244, 297
CviKI_1	RGCY	3 cut(s)	184, 244, 297
DdeI	CTNAG	4 cut(s)	104, 216, 228, 281
DpnI	GATC	1 cut(s)	89
DpnII	GATC	1 cut(s)	87
Eco31I	GGTCTC	1 cut(s)	167
FaeI	CATG	1 cut(s)	161
FaiI	YATR	6 cut(s)	48, 81, 159, 195, 210, 234
FalI	AAGNNNNNCTT	2 cut(s)	122, 154
FatI	CATG	1 cut(s)	157
FspBI	CTAG	1 cut(s)	186
HapII	CCGG	1 cut(s)	252
Hin1II	CATG	1 cut(s)	161
HpaII	CCGG	1 cut(s)	252
Hpy188I	TCNGA	1 cut(s)	72
HpyCH4III	ACNGT	1 cut(s)	321
HpyCH4V	TGCA	2 cut(s)	203, 301
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
HpyF3I	CTNAG	4 cut(s)	104, 216, 228, 281
Hsp92II	CATG	1 cut(s)	161
Kzo9I	GATC	1 cut(s)	87
LpnPI	CCDG	5 cut(s)	41, 226, 265, 268, 311
MaeI	CTAG	1 cut(s)	186
MaeIII	GTNAC	1 cut(s)	259
MalI	GATC	1 cut(s)	89
MboI	GATC	1 cut(s)	87
MnlI	CCTC	3 cut(s)	78, 182, 211
MseI	TTAA	2 cut(s)	32, 129
MspI	CCGG	1 cut(s)	252
MwoI	GCNNNNNNNGC	1 cut(s)	233
NdeII	GATC	1 cut(s)	87
NlaIII	CATG	1 cut(s)	161
NmuCI	GTSAC	1 cut(s)	259
PshBI	ATTAAT	1 cut(s)	32
SaqAI	TTAA	2 cut(s)	32, 129
Sau3AI	GATC	1 cut(s)	87
SetI	ASST	3 cut(s)	193, 287, 306
SfcI	CTRYAG	1 cut(s)	317
SspMI	CTAG	1 cut(s)	186
TaaI	ACNGT	1 cut(s)	321
TaqI	TCGA	2 cut(s)	17, 274
TaqII	GACCGA	1 cut(s)	191
Tru1I	TTAA	2 cut(s)	32, 129
Tru9I	TTAA	2 cut(s)	32, 129
TseFI	GTSAC	1 cut(s)	259
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	4 cut(s)	35, 51, 68, 225
VspI	ATTAAT	1 cut(s)	32
XspI	CTAG	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.