Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006638.1

Orthogroup ID

OG0004517

Physical Location & Seq

Genomic Coordinates Forward (+)

72297 .. 75722

Gene Structure 3426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006638.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

atgtcgacaaacacaaaattcagcgtttacgtaggtagtttggacgagcgggtgagtgatagagtgttatatgatattctaattcaggcagggagggtagttgacctgcacatccctcgagacaaggaaaccgacaagcctaaaggtagtttggacgagcgggtgagtgatagagtgttatatgatattctaattcaggcagggagggtagttgacctgcacatccctcgagacaaggaaaccgacaagcctaaaggttatgcttttgtagaatatgaaactgaggagattgctgagtatgctgttaggcttttctccggtcttgtgactctctacaatcgaacactcaagtttgcgatttctgggcaagacaagccttcacctaatgttgcttctacagtaatgcccacagccaatttttctaacaaattgaggtctacccctgtacctcttaacaatgtagaaaacttgcagaattcgatgagcttatcagcaccttgcaaaattccagcttatgcagaaacttatccctcagtgcccattccccctggtgtaaataaccaatctaatggattacatttgaatggcaacaatttcgagtatagtcgaagagttattggggcaacattggataccattagtcgccctaggtcacgccgctatgatatgagtaatccaatttcctatccgtcctactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

232

Amino Acids

26.02

Weight (kDa)

7.78

Isoelectric Point (pI)

44.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10110
fragaria_vesca	FvH4_2g00580 FvH4_2g00580 FvH4_3g25440 FvH4_3g25440 FvH4_3g25440 FvH4_3g25440 FvH4_3g25440 FvH4_3g25440
malus_domestica	MD10G1003200.v1.1
prunus_persica	Prupe.8G005800_v2.0.a1 Prupe.8G005800_v2.0.a1 Prupe.8G005800_v2.0.a1 Prupe.8G005800_v2.0.a1 Prupe.8G005800_v2.0.a1
pyrus_communis	pycom10g00260
rosa_chinensis	RchiOBHm_Chr6g0251031 RchiOBHm_Chr6g0280021
rosa_laevigata	RLG00000015489
rosa_multiflora	Rmu_sc0006638.1_g000018
rosa_roxburghii	Rroxscaffold_5G00349710 Rroxscaffold_7G00217110
rosa_rugosa	Rorug05G0499500 Rorug05G0499600 Rorug05G0499700 Rorug06G0244900
rosa_samantha	Rh6AG007700 Rh6BG003300 Rh6CG005200 Rh6DG005500 Rh6DG235800
rosa_wichuraiana	Rw6G000870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	114, 225
AccBSI	CCGCTC	2 cut(s)	49, 160
AccI	GTMKAC	2 cut(s)	5, 437
AciI	CCGC	3 cut(s)	49, 160, 658
AcsI	RAATTY	3 cut(s)	17, 475, 504
AfaI	GTAC	1 cut(s)	447
AgsI	TTSAA	1 cut(s)	583
AjnI	CCWGG	1 cut(s)	547
AluBI	AGCT	2 cut(s)	486, 512
AluI	AGCT	2 cut(s)	486, 512
Alw26I	GTCTC	2 cut(s)	114, 225
Ama87I	CYCGRG	2 cut(s)	117, 228
ApoI	RAATTY	3 cut(s)	17, 475, 504
AspA2I	CCTAGG	1 cut(s)	647
AsuHPI	GGTGA	3 cut(s)	64, 175, 372
AvaI	CYCGRG	2 cut(s)	117, 228
AvrII	CCTAGG	1 cut(s)	647
BaeGI	GKGCMC	1 cut(s)	540
BaeI	ACNNNNGTAYC	2 cut(s)	429, 462
BcgI	CGANNNNNNTGC	6 cut(s)	98, 132, 209, 243, 577, 611
BciT130I	CCWGG	1 cut(s)	549
BciVI	GTATCC	1 cut(s)	625
BcoDI	GTCTC	2 cut(s)	114, 225
BfaI	CTAG	1 cut(s)	648
BfmI	CTRYAG	1 cut(s)	396
BfuAI	ACCTGC	2 cut(s)	114, 225
BfuI	GTATCC	1 cut(s)	625
BisI	GCNGC	1 cut(s)	658
BlnI	CCTAGG	1 cut(s)	647
BlsI	GCNGC	1 cut(s)	659
Bme1390I	CCNGG	1 cut(s)	549
BmeT110I	CYCGRG	2 cut(s)	117, 228
BmrFI	CCNGG	1 cut(s)	549
BpuEI	CTTGAG	1 cut(s)	332
BsaAI	YACGTR	1 cut(s)	31
BsaJI	CCNNGG	2 cut(s)	547, 647
BsaWI	WCCGGW	1 cut(s)	317
BseBI	CCWGG	1 cut(s)	549
BseDI	CCNNGG	2 cut(s)	547, 647
BseGI	GGATG	2 cut(s)	111, 222
BseMII	CTCAG	3 cut(s)	273, 285, 546
BseRI	GAGGAG	1 cut(s)	299
BseSI	GKGCMC	1 cut(s)	540
BsgI	GTGCAG	2 cut(s)	92, 203
BsiHKCI	CYCGRG	2 cut(s)	117, 228
BsiSI	CCGG	1 cut(s)	318
BsmAI	GTCTC	2 cut(s)	114, 225
BsoBI	CYCGRG	2 cut(s)	117, 228
Bsp1286I	GDGCHC	1 cut(s)	540
BspACI	CCGC	3 cut(s)	49, 160, 658
BspCNI	CTCAG	3 cut(s)	274, 286, 545
BspMI	ACCTGC	2 cut(s)	114, 225
BsrBI	CCGCTC	2 cut(s)	49, 160
BssECI	CCNNGG	2 cut(s)	547, 647
BssT1I	CCWWGG	1 cut(s)	647
Bst2UI	CCWGG	1 cut(s)	549
Bst4CI	ACNGT	1 cut(s)	400
Bst6I	CTCTTC	1 cut(s)	604
BstBAI	YACGTR	1 cut(s)	31
BstDEI	CTNAG	3 cut(s)	282, 294, 532
BstF5I	GGATG	2 cut(s)	111, 222
BstMAI	GTCTC	2 cut(s)	114, 225
BstMWI	GCNNNNNNNGC	2 cut(s)	299, 373
BstNI	CCWGG	1 cut(s)	549
BstSCI	CCNGG	1 cut(s)	547
BstSFI	CTRYAG	1 cut(s)	396
BstSLI	GKGCMC	1 cut(s)	540
BstSNI	TACGTA	1 cut(s)	31
BstXI	CCANNNNNNTGG	1 cut(s)	569
BsuI	GTATCC	1 cut(s)	625
BtsCI	GGATG	2 cut(s)	111, 222
BtsIMutI	CAGTG	1 cut(s)	540
BveI	ACCTGC	2 cut(s)	114, 225
Csp6I	GTAC	1 cut(s)	446
CviJI	RGCY	7 cut(s)	139, 250, 310, 376, 413, 486, 512
CviKI_1	RGCY	7 cut(s)	139, 250, 310, 376, 413, 486, 512
CviQI	GTAC	1 cut(s)	446
DdeI	CTNAG	3 cut(s)	282, 294, 532
Eam1104I	CTCTTC	1 cut(s)	604
EarI	CTCTTC	1 cut(s)	604
Eco105I	TACGTA	1 cut(s)	31
Eco130I	CCWWGG	1 cut(s)	647
Eco88I	CYCGRG	2 cut(s)	117, 228
EcoRI	GAATTC	1 cut(s)	475
EcoRII	CCWGG	1 cut(s)	547
EcoT14I	CCWWGG	1 cut(s)	647
ErhI	CCWWGG	1 cut(s)	647
FauI	CCCGC	2 cut(s)	42, 153
FblI	GTMKAC	2 cut(s)	5, 437
Fnu4HI	GCNGC	1 cut(s)	658
FokI	GGATG	2 cut(s)	98, 209
Fsp4HI	GCNGC	1 cut(s)	658
FspBI	CTAG	1 cut(s)	648
GluI	GCNGC	1 cut(s)	658
HapII	CCGG	1 cut(s)	318
HincII	GTYRAC	3 cut(s)	6, 103, 214
HindII	GTYRAC	3 cut(s)	6, 103, 214
HinfI	GANTC	1 cut(s)	328
HpaII	CCGG	1 cut(s)	318
HphI	GGTGA	3 cut(s)	64, 175, 372
Hpy166II	GTNNAC	5 cut(s)	6, 28, 103, 214, 438
Hpy188III	TCNNGA	2 cut(s)	119, 230
Hpy8I	GTNNAC	5 cut(s)	6, 28, 103, 214, 438
HpyAV	CCTTC	1 cut(s)	387
HpyCH4III	ACNGT	1 cut(s)	400
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	5 cut(s)	109, 220, 472, 501, 518
HpyF10VI	GCNNNNNNNGC	2 cut(s)	299, 373
HpyF3I	CTNAG	3 cut(s)	282, 294, 532
HpySE526I	ACGT	1 cut(s)	30
MaeI	CTAG	1 cut(s)	648
MaeII	ACGT	1 cut(s)	30
MaeIII	GTNAC	2 cut(s)	325, 651
MbiI	CCGCTC	2 cut(s)	49, 160
MboII	GAAGA	1 cut(s)	621
MhlI	GDGCHC	1 cut(s)	540
MluCI	AATT	9 cut(s)	17, 81, 192, 415, 428, 475, 504, 592, 678
MlyI	GAGTC	1 cut(s)	322
MnlI	CCTC	8 cut(s)	87, 126, 198, 237, 277, 426, 459, 541
MseI	TTAA	1 cut(s)	453
MslI	CAYNNNNRTG	1 cut(s)	582
MspI	CCGG	1 cut(s)	318
MspR9I	CCNGG	1 cut(s)	549
MvaI	CCWGG	1 cut(s)	549
MwoI	GCNNNNNNNGC	2 cut(s)	299, 373
NmuCI	GTSAC	2 cut(s)	325, 651
PaeR7I	CTCGAG	2 cut(s)	117, 228
PkrI	GCNGC	1 cut(s)	659
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
Ppu21I	YACGTR	1 cut(s)	31
Psp6I	CCWGG	1 cut(s)	547
PspGI	CCWGG	1 cut(s)	547
RsaI	GTAC	1 cut(s)	447
RsaNI	GTAC	1 cut(s)	446
RseI	CAYNNNNRTG	1 cut(s)	582
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	453
SatI	GCNGC	1 cut(s)	658
SchI	GAGTC	1 cut(s)	322
ScrFI	CCNGG	1 cut(s)	549
SduI	GDGCHC	1 cut(s)	540
SfcI	CTRYAG	1 cut(s)	396
Sfr274I	CTCGAG	2 cut(s)	117, 228
SlaI	CTCGAG	2 cut(s)	117, 228
SmiMI	CAYNNNNRTG	1 cut(s)	582
SmlI	CTYRAG	3 cut(s)	117, 228, 347
SmoI	CTYRAG	3 cut(s)	117, 228, 347
SnaBI	TACGTA	1 cut(s)	31
Sse9I	AATT	9 cut(s)	17, 81, 192, 415, 428, 475, 504, 592, 678
SsiI	CCGC	3 cut(s)	49, 160, 658
SspMI	CTAG	1 cut(s)	648
StyD4I	CCNGG	1 cut(s)	547
StyI	CCWWGG	1 cut(s)	647
TaaI	ACNGT	1 cut(s)	400
TaiI	ACGT	1 cut(s)	33
TaqI	TCGA	7 cut(s)	5, 118, 229, 340, 479, 597, 607
TasI	AATT	9 cut(s)	17, 81, 192, 415, 428, 475, 504, 592, 678
TauI	GCSGC	1 cut(s)	660
Tru1I	TTAA	1 cut(s)	453
Tru9I	TTAA	1 cut(s)	453
TscAI	CASTG	1 cut(s)	540
TseFI	GTSAC	2 cut(s)	325, 651
Tsp45I	GTSAC	2 cut(s)	325, 651
TspDTI	ATGAA	1 cut(s)	291
TspGWI	ACGGA	1 cut(s)	678
TspRI	CASTG	1 cut(s)	540
XapI	RAATTY	3 cut(s)	17, 475, 504
XhoI	CTCGAG	2 cut(s)	117, 228
XmaJI	CCTAGG	1 cut(s)	647
XmiI	GTMKAC	2 cut(s)	5, 437
XspI	CTAG	1 cut(s)	648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.