Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0004517

Physical Location & Seq

Genomic Coordinates Forward (+)

641803 .. 644015

Gene Structure 2213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1003200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGTCCACCCACTCAAAATCCAGCGTTTACATAGGTAATTTGGACGAGCGAGTGAGTGATAGAGTTTTGTATGATATTCTCATTCAGGCAGGGAGGGTGGTAGACCTGCACATTCCGCGAGACAAAGAAACCGATAAGCCTAAAGGTTTTGCTTTCGCAGAATATGAATCTGAGGAGATTGCTGACTATGCTGTTAGGCTCTTCACTGGTCTTGTCACTCTCTACAACCGGACACTCAAGTTTGCGATCTCTGGGCAAGACAAGCCCTCGCATAATACTACTTCTATGGTGACATCCACACACAATTTTCCTCACAAACTGAGGTCCACCCCTGTACCAATTAACAGTATGGAAAACTCTCCGAATTCCGTGGGTATATTGACACCCAGAATTTCAGACTATCCCCCAGAGCCCACTCCCCCTGGTGTAAATAACCAATCTAATGGGTATGGATTACATTTCAATGGCAACAATTACGATTATAGTCGAAGAGTTATTGGGGCAACACTGGATACCATTAGTCGCACTAGGTCACGCCGCTATGATATGAGCAACCCAATCTCCTATCCTTCTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

193

Amino Acids

21.61

Weight (kDa)

7.95

Isoelectric Point (pI)

47.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	9 - 80	1e-14	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10110
fragaria_vesca	FvH4_2g00580 FvH4_2g00580 FvH4_3g25440 FvH4_3g25440 FvH4_3g25440 FvH4_3g25440 FvH4_3g25440 FvH4_3g25440
malus_domestica	MD10G1003200.v1.1
prunus_persica	Prupe.8G005800_v2.0.a1 Prupe.8G005800_v2.0.a1 Prupe.8G005800_v2.0.a1 Prupe.8G005800_v2.0.a1 Prupe.8G005800_v2.0.a1
pyrus_communis	pycom10g00260
rosa_chinensis	RchiOBHm_Chr6g0251031 RchiOBHm_Chr6g0280021
rosa_laevigata	RLG00000015489
rosa_multiflora	Rmu_sc0006638.1_g000018
rosa_roxburghii	Rroxscaffold_5G00349710 Rroxscaffold_7G00217110
rosa_rugosa	Rorug05G0499500 Rorug05G0499600 Rorug05G0499700 Rorug06G0244900
rosa_samantha	Rh6AG007700 Rh6BG003300 Rh6CG005200 Rh6DG005500 Rh6DG235800
rosa_wichuraiana	Rw6G000870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	114
AccI	GTMKAC	1 cut(s)	102
AccII	CGCG	1 cut(s)	118
AciI	CCGC	2 cut(s)	116, 538
AcsI	RAATTY	2 cut(s)	364, 390
AfaI	GTAC	1 cut(s)	336
AgsI	TTSAA	1 cut(s)	463
AjnI	CCWGG	1 cut(s)	421
Alw26I	GTCTC	1 cut(s)	114
ApoI	RAATTY	2 cut(s)	364, 390
AspS9I	GGNCC	1 cut(s)	324
AsuHPI	GGTGA	1 cut(s)	301
AvaII	GGWCC	1 cut(s)	324
BaeI	ACNNNNGTAYC	2 cut(s)	318, 351
BanII	GRGCYC	1 cut(s)	414
BciT130I	CCWGG	1 cut(s)	423
BciVI	GTATCC	1 cut(s)	505
BcoDI	GTCTC	1 cut(s)	114
BfaI	CTAG	2 cut(s)	528, 577
BfuAI	ACCTGC	1 cut(s)	114
BfuI	GTATCC	1 cut(s)	505
BisI	GCNGC	1 cut(s)	538
BlsI	GCNGC	1 cut(s)	539
Bme1390I	CCNGG	1 cut(s)	423
Bme18I	GGWCC	1 cut(s)	324
BmgT120I	GGNCC	1 cut(s)	324
BmrFI	CCNGG	1 cut(s)	423
BpuEI	CTTGAG	1 cut(s)	221
BsaJI	CCNNGG	2 cut(s)	369, 421
BsaWI	WCCGGW	1 cut(s)	228
BsaXI	ACNNNNNCTCC	2 cut(s)	545, 575
Bse1I	ACTGG	2 cut(s)	211, 513
BseBI	CCWGG	1 cut(s)	423
BseDI	CCNNGG	2 cut(s)	369, 421
BseGI	GGATG	1 cut(s)	293
BseMII	CTCAG	2 cut(s)	162, 311
BseNI	ACTGG	2 cut(s)	211, 513
BseRI	GAGGAG	1 cut(s)	188
BsgI	GTGCAG	1 cut(s)	92
Bsh1236I	CGCG	1 cut(s)	118
BsiSI	CCGG	1 cut(s)	229
BsmAI	GTCTC	1 cut(s)	114
Bsp1286I	GDGCHC	1 cut(s)	414
Bsp143I	GATC	1 cut(s)	246
BspACI	CCGC	2 cut(s)	116, 538
BspCNI	CTCAG	2 cut(s)	163, 312
BspFNI	CGCG	1 cut(s)	118
BspMI	ACCTGC	1 cut(s)	114
BspQI	GCTCTTC	1 cut(s)	206
BsrI	ACTGG	2 cut(s)	211, 513
BssECI	CCNNGG	2 cut(s)	369, 421
BssMI	GATC	1 cut(s)	246
Bst2UI	CCWGG	1 cut(s)	423
Bst4CI	ACNGT	1 cut(s)	347
Bst6I	CTCTTC	2 cut(s)	206, 484
BstDEI	CTNAG	2 cut(s)	171, 320
BstDSI	CCRYGG	1 cut(s)	369
BstF5I	GGATG	1 cut(s)	293
BstFNI	CGCG	1 cut(s)	118
BstKTI	GATC	1 cut(s)	249
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	1 cut(s)	246
BstMWI	GCNNNNNNNGC	3 cut(s)	115, 188, 262
BstNI	CCWGG	1 cut(s)	423
BstSCI	CCNGG	1 cut(s)	421
BstUI	CGCG	1 cut(s)	118
BstXI	CCANNNNNNTGG	1 cut(s)	443
BsuI	GTATCC	1 cut(s)	505
BtgI	CCRYGG	1 cut(s)	369
BtsCI	GGATG	1 cut(s)	293
BtsIMutI	CAGTG	2 cut(s)	204, 506
BveI	ACCTGC	1 cut(s)	114
Cfr13I	GGNCC	1 cut(s)	324
Csp6I	GTAC	1 cut(s)	335
CviJI	RGCY	4 cut(s)	139, 199, 265, 412
CviKI_1	RGCY	4 cut(s)	139, 199, 265, 412
CviQI	GTAC	1 cut(s)	335
DdeI	CTNAG	2 cut(s)	171, 320
DpnI	GATC	1 cut(s)	248
DpnII	GATC	1 cut(s)	246
Eam1104I	CTCTTC	2 cut(s)	206, 484
EarI	CTCTTC	2 cut(s)	206, 484
Eco24I	GRGCYC	1 cut(s)	414
Eco47I	GGWCC	1 cut(s)	324
EcoRI	GAATTC	1 cut(s)	364
EcoRII	CCWGG	1 cut(s)	421
EcoT38I	GRGCYC	1 cut(s)	414
FblI	GTMKAC	1 cut(s)	102
Fnu4HI	GCNGC	1 cut(s)	538
FokI	GGATG	1 cut(s)	280
FriOI	GRGCYC	1 cut(s)	414
Fsp4HI	GCNGC	1 cut(s)	538
FspBI	CTAG	2 cut(s)	528, 577
GluI	GCNGC	1 cut(s)	538
HapII	CCGG	1 cut(s)	229
HinfI	GANTC	1 cut(s)	167
HpaII	CCGG	1 cut(s)	229
HphI	GGTGA	1 cut(s)	301
Hpy166II	GTNNAC	4 cut(s)	6, 28, 103, 327
Hpy188I	TCNGA	3 cut(s)	172, 363, 397
Hpy8I	GTNNAC	4 cut(s)	6, 28, 103, 327
HpyAV	CCTTC	1 cut(s)	579
HpyCH4III	ACNGT	1 cut(s)	347
HpyCH4V	TGCA	1 cut(s)	109
HpyF10VI	GCNNNNNNNGC	3 cut(s)	115, 188, 262
HpyF3I	CTNAG	2 cut(s)	171, 320
Kzo9I	GATC	1 cut(s)	246
LguI	GCTCTTC	1 cut(s)	206
MaeI	CTAG	2 cut(s)	528, 577
MaeIII	GTNAC	3 cut(s)	214, 289, 531
MalI	GATC	1 cut(s)	248
MboI	GATC	1 cut(s)	246
MboII	GAAGA	2 cut(s)	193, 501
MhlI	GDGCHC	1 cut(s)	414
MluCI	AATT	6 cut(s)	37, 304, 339, 364, 390, 472
MnlI	CCTC	5 cut(s)	87, 166, 277, 315, 321
MseI	TTAA	1 cut(s)	342
MslI	CAYNNNNRTG	1 cut(s)	462
MspI	CCGG	1 cut(s)	229
MspR9I	CCNGG	1 cut(s)	423
MvaI	CCWGG	1 cut(s)	423
MvnI	CGCG	1 cut(s)	118
MwoI	GCNNNNNNNGC	3 cut(s)	115, 188, 262
NdeII	GATC	1 cut(s)	246
NmuCI	GTSAC	3 cut(s)	214, 289, 531
PciSI	GCTCTTC	1 cut(s)	206
PfeI	GAWTC	1 cut(s)	167
PkrI	GCNGC	1 cut(s)	539
Psp6I	CCWGG	1 cut(s)	421
PspGI	CCWGG	1 cut(s)	421
PspPI	GGNCC	1 cut(s)	324
RsaI	GTAC	1 cut(s)	336
RsaNI	GTAC	1 cut(s)	335
RseI	CAYNNNNRTG	1 cut(s)	462
SapI	GCTCTTC	1 cut(s)	206
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	1 cut(s)	538
Sau3AI	GATC	1 cut(s)	246
Sau96I	GGNCC	1 cut(s)	324
ScrFI	CCNGG	1 cut(s)	423
SduI	GDGCHC	1 cut(s)	414
SetI	ASST	5 cut(s)	37, 108, 148, 326, 533
SinI	GGWCC	1 cut(s)	324
SmiMI	CAYNNNNRTG	1 cut(s)	462
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
Sse9I	AATT	6 cut(s)	37, 304, 339, 364, 390, 472
SsiI	CCGC	2 cut(s)	116, 538
SspMI	CTAG	2 cut(s)	528, 577
StyD4I	CCNGG	1 cut(s)	421
TaaI	ACNGT	1 cut(s)	347
TaqI	TCGA	1 cut(s)	487
TasI	AATT	6 cut(s)	37, 304, 339, 364, 390, 472
TauI	GCSGC	1 cut(s)	540
TfiI	GAWTC	1 cut(s)	167
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TscAI	CASTG	2 cut(s)	211, 513
TseFI	GTSAC	3 cut(s)	214, 289, 531
Tsp45I	GTSAC	3 cut(s)	214, 289, 531
TspDTI	ATGAA	1 cut(s)	180
TspGWI	ACGGA	1 cut(s)	358
TspRI	CASTG	2 cut(s)	211, 513
VpaK11BI	GGWCC	1 cut(s)	324
XapI	RAATTY	2 cut(s)	364, 390
XmiI	GTMKAC	1 cut(s)	102
XspI	CTAG	2 cut(s)	528, 577

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.