Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0004517

Physical Location & Seq

Genomic Coordinates Forward (+)

975615 .. 977415

Gene Structure 1801 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG007700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGTCGACAAACACAAAATTCAGCGTTTACGTAGGTAGTTTGGACGAGCGGGTGAGTGATAGAGTGTTATATGATATTCTAATTCAGGCAGGGAGGGTAGTTGACCTGCACATCCCTCGAGACAAGGAAACCGACAGGCCTAAAGGTTATGCTTTTGCAGAATATGAAACTGAGGAGATTGCTGAGTATGCTGTTAGGCTTTTCTCCGGTCTTGTGACTCTCTACAATCGAACACTCAAGTTTGCAATTTCTGGGCAAGACAAGCCTTCACCTAATGTTGCTTCTACAGTAATGCCCACAGCCAATTTTTCTAACAAATTGAGGTCTCCCCCTGTACCTCTTAACAATGTAGAAAACTCGCAGAATTCAATGAGCTTATCAGCACCCTGCAAAATTCCAGCTTATGCAGAAACTTATCCCTCAGTGCCCATTCCCCCTGGTGTAAATAACCAATCTAATGGATTACATTTGAATGGCAACAATTTCGAGTATAGTCGAAGAGTTATTGGGGCAACATTGGATACCATTAGTCGCCCTAGGTCACGCCGCTATGATATGAGTAATCCAATTTCCTATCCGTCCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

195

Amino Acids

21.76

Weight (kDa)

8.61

Isoelectric Point (pI)

54.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	9 - 80	4.1e-14	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10110
fragaria_vesca	FvH4_2g00580 FvH4_2g00580 FvH4_3g25440 FvH4_3g25440 FvH4_3g25440 FvH4_3g25440 FvH4_3g25440 FvH4_3g25440
malus_domestica	MD10G1003200.v1.1
prunus_persica	Prupe.8G005800_v2.0.a1 Prupe.8G005800_v2.0.a1 Prupe.8G005800_v2.0.a1 Prupe.8G005800_v2.0.a1 Prupe.8G005800_v2.0.a1
pyrus_communis	pycom10g00260
rosa_chinensis	RchiOBHm_Chr6g0251031 RchiOBHm_Chr6g0280021
rosa_laevigata	RLG00000015489
rosa_multiflora	Rmu_sc0006638.1_g000018
rosa_roxburghii	Rroxscaffold_5G00349710 Rroxscaffold_7G00217110
rosa_rugosa	Rorug05G0499500 Rorug05G0499600 Rorug05G0499700 Rorug06G0244900
rosa_samantha	Rh6AG007700 Rh6BG003300 Rh6CG005200 Rh6DG005500 Rh6DG235800
rosa_wichuraiana	Rw6G000870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	114
AccBSI	CCGCTC	1 cut(s)	49
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	2 cut(s)	49, 547
AcsI	RAATTY	3 cut(s)	17, 364, 393
AfaI	GTAC	1 cut(s)	336
AgsI	TTSAA	2 cut(s)	369, 472
AjnI	CCWGG	1 cut(s)	436
AluBI	AGCT	2 cut(s)	375, 401
AluI	AGCT	2 cut(s)	375, 401
Alw26I	GTCTC	2 cut(s)	114, 330
Ama87I	CYCGRG	1 cut(s)	117
AoxI	GGCC	1 cut(s)	137
ApoI	RAATTY	3 cut(s)	17, 364, 393
AspA2I	CCTAGG	1 cut(s)	536
AsuHPI	GGTGA	2 cut(s)	64, 261
AvaI	CYCGRG	1 cut(s)	117
AvrII	CCTAGG	1 cut(s)	536
BaeGI	GKGCMC	1 cut(s)	429
BcgI	CGANNNNNNTGC	4 cut(s)	98, 132, 466, 500
BciT130I	CCWGG	1 cut(s)	438
BciVI	GTATCC	1 cut(s)	514
BcoDI	GTCTC	2 cut(s)	114, 330
BfaI	CTAG	1 cut(s)	537
BfmI	CTRYAG	1 cut(s)	285
BfuAI	ACCTGC	1 cut(s)	114
BfuI	GTATCC	1 cut(s)	514
BisI	GCNGC	1 cut(s)	547
BlnI	CCTAGG	1 cut(s)	536
BlsI	GCNGC	1 cut(s)	548
Bme1390I	CCNGG	1 cut(s)	438
BmeT110I	CYCGRG	1 cut(s)	117
BmrFI	CCNGG	1 cut(s)	438
BpuEI	CTTGAG	1 cut(s)	221
BsaAI	YACGTR	1 cut(s)	31
BsaI	GGTCTC	1 cut(s)	330
BsaJI	CCNNGG	2 cut(s)	436, 536
BsaWI	WCCGGW	1 cut(s)	206
BseBI	CCWGG	1 cut(s)	438
BseDI	CCNNGG	2 cut(s)	436, 536
BseGI	GGATG	1 cut(s)	111
BseMII	CTCAG	3 cut(s)	162, 174, 435
BseRI	GAGGAG	1 cut(s)	188
BseSI	GKGCMC	1 cut(s)	429
BsgI	GTGCAG	1 cut(s)	92
BshFI	GGCC	1 cut(s)	139
BsiHKCI	CYCGRG	1 cut(s)	117
BsiSI	CCGG	1 cut(s)	207
BsmAI	GTCTC	2 cut(s)	114, 330
BsnI	GGCC	1 cut(s)	139
Bso31I	GGTCTC	1 cut(s)	330
BsoBI	CYCGRG	1 cut(s)	117
Bsp1286I	GDGCHC	1 cut(s)	429
BspACI	CCGC	2 cut(s)	49, 547
BspANI	GGCC	1 cut(s)	139
BspCNI	CTCAG	3 cut(s)	163, 175, 434
BspMI	ACCTGC	1 cut(s)	114
BspTNI	GGTCTC	1 cut(s)	330
BsrBI	CCGCTC	1 cut(s)	49
BssECI	CCNNGG	2 cut(s)	436, 536
BssT1I	CCWWGG	1 cut(s)	536
Bst2UI	CCWGG	1 cut(s)	438
Bst4CI	ACNGT	1 cut(s)	289
Bst6I	CTCTTC	1 cut(s)	493
BstBAI	YACGTR	1 cut(s)	31
BstDEI	CTNAG	3 cut(s)	171, 183, 421
BstF5I	GGATG	1 cut(s)	111
BstMAI	GTCTC	2 cut(s)	114, 330
BstMWI	GCNNNNNNNGC	2 cut(s)	188, 262
BstNI	CCWGG	1 cut(s)	438
BstSCI	CCNGG	1 cut(s)	436
BstSFI	CTRYAG	1 cut(s)	285
BstSLI	GKGCMC	1 cut(s)	429
BstSNI	TACGTA	1 cut(s)	31
BstXI	CCANNNNNNTGG	1 cut(s)	458
BsuI	GTATCC	1 cut(s)	514
BsuRI	GGCC	1 cut(s)	139
BtsCI	GGATG	1 cut(s)	111
BtsIMutI	CAGTG	1 cut(s)	429
BveI	ACCTGC	1 cut(s)	114
Csp6I	GTAC	1 cut(s)	335
CviJI	RGCY	6 cut(s)	139, 199, 265, 302, 375, 401
CviKI_1	RGCY	6 cut(s)	139, 199, 265, 302, 375, 401
CviQI	GTAC	1 cut(s)	335
DdeI	CTNAG	3 cut(s)	171, 183, 421
Eam1104I	CTCTTC	1 cut(s)	493
EarI	CTCTTC	1 cut(s)	493
Eco105I	TACGTA	1 cut(s)	31
Eco130I	CCWWGG	1 cut(s)	536
Eco147I	AGGCCT	1 cut(s)	139
Eco31I	GGTCTC	1 cut(s)	330
Eco88I	CYCGRG	1 cut(s)	117
EcoRI	GAATTC	1 cut(s)	364
EcoRII	CCWGG	1 cut(s)	436
EcoT14I	CCWWGG	1 cut(s)	536
ErhI	CCWWGG	1 cut(s)	536
FaiI	YATR	9 cut(s)	70, 72, 150, 165, 189, 405, 492, 552, 557
FauI	CCCGC	1 cut(s)	42
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	1 cut(s)	547
FokI	GGATG	1 cut(s)	98
Fsp4HI	GCNGC	1 cut(s)	547
FspBI	CTAG	1 cut(s)	537
GluI	GCNGC	1 cut(s)	547
HaeIII	GGCC	1 cut(s)	139
HapII	CCGG	1 cut(s)	207
HincII	GTYRAC	2 cut(s)	6, 103
HindII	GTYRAC	2 cut(s)	6, 103
HinfI	GANTC	1 cut(s)	217
HpaII	CCGG	1 cut(s)	207
HphI	GGTGA	2 cut(s)	64, 261
Hpy166II	GTNNAC	3 cut(s)	6, 28, 103
Hpy188III	TCNNGA	1 cut(s)	119
Hpy8I	GTNNAC	3 cut(s)	6, 28, 103
HpyAV	CCTTC	1 cut(s)	276
HpyCH4III	ACNGT	1 cut(s)	289
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	5 cut(s)	109, 158, 245, 390, 407
HpyF10VI	GCNNNNNNNGC	2 cut(s)	188, 262
HpyF3I	CTNAG	3 cut(s)	171, 183, 421
HpySE526I	ACGT	1 cut(s)	30
MaeI	CTAG	1 cut(s)	537
MaeII	ACGT	1 cut(s)	30
MaeIII	GTNAC	2 cut(s)	214, 540
MbiI	CCGCTC	1 cut(s)	49
MboII	GAAGA	1 cut(s)	510
MhlI	GDGCHC	1 cut(s)	429
MluCI	AATT	9 cut(s)	17, 81, 246, 304, 317, 364, 393, 481, 567
MlyI	GAGTC	1 cut(s)	211
MnlI	CCTC	6 cut(s)	87, 126, 166, 315, 348, 430
MseI	TTAA	1 cut(s)	342
MslI	CAYNNNNRTG	1 cut(s)	471
MspI	CCGG	1 cut(s)	207
MspR9I	CCNGG	1 cut(s)	438
MvaI	CCWGG	1 cut(s)	438
MwoI	GCNNNNNNNGC	2 cut(s)	188, 262
NmuCI	GTSAC	2 cut(s)	214, 540
PaeR7I	CTCGAG	1 cut(s)	117
PceI	AGGCCT	1 cut(s)	139
PkrI	GCNGC	1 cut(s)	548
PleI	GAGTC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	211
Ppu21I	YACGTR	1 cut(s)	31
Psp6I	CCWGG	1 cut(s)	436
PspGI	CCWGG	1 cut(s)	436
RsaI	GTAC	1 cut(s)	336
RsaNI	GTAC	1 cut(s)	335
RseI	CAYNNNNRTG	1 cut(s)	471
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	1 cut(s)	547
SchI	GAGTC	1 cut(s)	211
ScrFI	CCNGG	1 cut(s)	438
SduI	GDGCHC	1 cut(s)	429
SfcI	CTRYAG	1 cut(s)	285
Sfr274I	CTCGAG	1 cut(s)	117
SlaI	CTCGAG	1 cut(s)	117
SmiMI	CAYNNNNRTG	1 cut(s)	471
SmlI	CTYRAG	2 cut(s)	117, 236
SmoI	CTYRAG	2 cut(s)	117, 236
SnaBI	TACGTA	1 cut(s)	31
Sse9I	AATT	9 cut(s)	17, 81, 246, 304, 317, 364, 393, 481, 567
SseBI	AGGCCT	1 cut(s)	139
SsiI	CCGC	2 cut(s)	49, 547
SspMI	CTAG	1 cut(s)	537
StuI	AGGCCT	1 cut(s)	139
StyD4I	CCNGG	1 cut(s)	436
StyI	CCWWGG	1 cut(s)	536
TaaI	ACNGT	1 cut(s)	289
TaiI	ACGT	1 cut(s)	33
TaqI	TCGA	5 cut(s)	5, 118, 229, 486, 496
TasI	AATT	9 cut(s)	17, 81, 246, 304, 317, 364, 393, 481, 567
TauI	GCSGC	1 cut(s)	549
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TscAI	CASTG	1 cut(s)	429
TseFI	GTSAC	2 cut(s)	214, 540
Tsp45I	GTSAC	2 cut(s)	214, 540
TspDTI	ATGAA	1 cut(s)	180
TspGWI	ACGGA	1 cut(s)	567
TspRI	CASTG	1 cut(s)	429
XapI	RAATTY	3 cut(s)	17, 364, 393
XhoI	CTCGAG	1 cut(s)	117
XmaJI	CCTAGG	1 cut(s)	536
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	1 cut(s)	537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.