Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004517

Physical Location & Seq

Genomic Coordinates Reverse (-)

68111411 .. 68113302

Gene Structure 1892 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0499600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1782 bp

ATGCCGAAGATTATTCCGACATGTGCCTCTTCTTATTCTCGTTGCAGAACAAGGGGTATGCCTTTTCTTCACTCTACTCCTCCTCTTGTTGCTTTGTTTCATTCTCAATCCCCAAAGCCAACCAAATCTAGAGAAAGCCAGCTAGGAAAGCCCAGAGTGAGTAATGTTGAGGATGCCCTGAAGGTGTTCGATGAAATGCTTCACTCGCGTCCTCTGCCTTCTGTTGTCCGTTTCACTCAGATCTTGGCTCAACTTGTCAAACTAAAACACTATTCATCAGTCCTCTCTTTGCATAGACAAATGGGTCTCATCGGAATTGCTTCTGATACTTATACTCTAACCATTGTCATCAATTGCTACTGCCATTTGAATCAAATGGGGTGTAGTTTGTCTGTCTTGGGCCAATTCTTCAAATCGGGTCTTCAACCAAATGTTGCAACCTTCAACACTCTTATCAACGGTTTTGTTCTCCAAAATAGAGTGGCTGAGGCAGCAAGACTTTTCAGCAAAATGGTGGGGGGAGGTCATTGTCAGCCGGATGTGTTTACTTTCAACACACTAATAAAGGGCTTTTGCAAGATTGGAAACAACAGTGCAGCTTTTCAGTTACTTGGGAAGATGGAAGAAAGAGGATGCGAGCCTGACATATTTACCTTTAACACCATTATCGACAGTCATTGTAAGGATACACTAGTTGATCAAGCATTGAACCTCTTCACAGAAATGATTGGTAGAGGTATTGCTCCAGACGTTGTCACTTACAACTCTTTGATTCAAGGAGTCTGCAAACTAGGTCAGTGGAAAGAAGCTACAAGGTTGTTGAATGAAATGGTGAGTCAAGGTATATTTCCGAATGTACGCACCTTCAATGTCTTGGTTGACGCACTTTGTAAGGAGGGGATGGTCGTGGAAGCCAAAAGTGTGGTTGAGATGATGATTCAAAGAGGAATTGAACCTAACACGATTACATATGGTTCCCTCATGGACGGTTACTGTTTGCAAGGAGAGATGGACAAGGCGAAACAAGTTTTTGATCTAACGGTTAGCAAGGGCTCCATGGTTAATGTTCAGTGTTGTAACATATTGATAAACGGATATTGCAAGGGTAAAAAGATCGATAAGGCTTACTTGATTTTCAAGGAAATGCATCATATGGAACTTGTTCCTGATACCATTACTTATACTACTCTTATTGATGGTTTTTGCAAAGTGGGGAGAATACAAGAAGCAGAAAAGCTGTTCTCTCAGATGCAAGGTTGTGGCCAACATCCAAATATTCAAACTTATGCTGTTTTACTTGATGCCCTATGTAGCAACCAGCAACTTTCTGAGGCAATAGAATTGCTTAGAGGGATGAAGGACAAAAAGCTGGAACTGAATATTGTAATTTACAGTATTATTATTGAAGGTTTGTGCAAAGCTGGGAAAATGGATTCTGCCATAGAGGTCTTCTCTGGTTTGTCATTGAAAGGAGTACAACCTAATGTGAGGATATACAATATAATGATTCATGGATTTTGTAAAGCGGGCTTATTAAATGAGGCAGATAAGTTGCTGGGAGAAATGGGAGAGAAAGGCTGGTCTCCAGATGGTTGGACCTATAACATCATTATCCGAGGGTTGTTAAATAACAATGACACATCAAGGGCTACGAGACTTATGCAAGAAATGGTAGAGTCAGGTTTCTCTGCAGATGCATCAACTATGGAATTGATAGCTGGTTTATTGTCTAAGGATATAGTAGATCCAGCTTTGTTGCCATTGTTAAACAAATCATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

593

Amino Acids

65.64

Weight (kDa)

8.14

Isoelectric Point (pI)

29.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	140 - 172	1e-09	PPR repeat
PPR_2	PF13041	143 - 193	3.7e-15	PPR repeat family
PPR_3	PF13812	177 - 224	1.5e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	177 - 208	2.1e-12	PPR repeat
PPR_2	PF13041	179 - 228	4.1e-18	PPR repeat family
TPR_24	PF23276	182 - 275	2.6e-06	Fungal tetratrico peptide repeats
PPR	PF01535	182 - 212	5.2e-07	PPR repeat
PPR_1	PF12854	210 - 242	2e-12	PPR repeat
PPR_2	PF13041	214 - 263	1.1e-17	PPR repeat family
PPR_long	PF17177	229 - 343	1.5e-09	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	238 - 296	7.9e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	245 - 278	7.1e-13	PPR repeat
PPR_2	PF13041	249 - 298	1e-19	PPR repeat family
PPR	PF01535	252 - 282	1.7e-08	PPR repeat
MRP-S27	PF10037	253 - 316	2.8e-07	Mitochondrial 28S ribosomal protein S27
PPR_1	PF12854	281 - 312	6.6e-10	PPR repeat
PPR_2	PF13041	288 - 332	2.4e-12	PPR repeat family
PPR	PF01535	288 - 317	8.5e-07	PPR repeat
PPR_1	PF12854	315 - 345	4e-10	PPR repeat
PPR_2	PF13041	324 - 368	2.9e-07	PPR repeat family
PPR_long	PF17177	339 - 462	4.3e-07	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	355 - 382	7.6e-06	PPR repeat
PPR_2	PF13041	355 - 403	7.3e-16	PPR repeat family
PPR	PF01535	359 - 384	8.2e-06	PPR repeat
PPR_3	PF13812	378 - 436	4.3e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	386 - 418	2.2e-14	PPR repeat
PPR_2	PF13041	389 - 437	3.2e-17	PPR repeat family
TPR_24	PF23276	391 - 485	2.3e-09	Fungal tetratrico peptide repeats
PPR	PF01535	392 - 421	4.3e-09	PPR repeat
PPR_2	PF13041	432 - 473	3.6e-08	PPR repeat family
PPR_3	PF13812	448 - 504	6.1e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	457 - 484	2.7e-09	PPR repeat
PPR_2	PF13041	460 - 496	8.6e-08	PPR repeat family
PPR_1	PF12854	490 - 522	1.4e-12	PPR repeat
PPR_2	PF13041	494 - 542	2.8e-16	PPR repeat family
PPR	PF01535	498 - 526	3.3e-08	PPR repeat
PPR_2	PF13041	533 - 569	1.4e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10110
fragaria_vesca	FvH4_2g00580 FvH4_2g00580 FvH4_3g25440 FvH4_3g25440 FvH4_3g25440 FvH4_3g25440 FvH4_3g25440 FvH4_3g25440
malus_domestica	MD10G1003200.v1.1
prunus_persica	Prupe.8G005800_v2.0.a1 Prupe.8G005800_v2.0.a1 Prupe.8G005800_v2.0.a1 Prupe.8G005800_v2.0.a1 Prupe.8G005800_v2.0.a1
pyrus_communis	pycom10g00260
rosa_chinensis	RchiOBHm_Chr6g0251031 RchiOBHm_Chr6g0280021
rosa_laevigata	RLG00000015489
rosa_multiflora	Rmu_sc0006638.1_g000018
rosa_roxburghii	Rroxscaffold_5G00349710 Rroxscaffold_7G00217110
rosa_rugosa	Rorug05G0499500 Rorug05G0499600 Rorug05G0499700 Rorug06G0244900
rosa_samantha	Rh6AG007700 Rh6BG003300 Rh6CG005200 Rh6DG005500 Rh6DG235800
rosa_wichuraiana	Rw6G000870

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1780
AasI	GACNNNNNNGTC	1 cut(s)	303
AccII	CGCG	1 cut(s)	208
AciI	CCGC	1 cut(s)	1526
AclWI	GGATC	1 cut(s)	1739
AcoI	YGGCCR	1 cut(s)	1261
AcuI	CTGAAG	1 cut(s)	200
AfaI	GTAC	2 cut(s)	858, 1476
AflIII	ACRYGT	1 cut(s)	20
AhlI	ACTAGT	1 cut(s)	691
AluBI	AGCT	8 cut(s)	142, 599, 809, 1237, 1369, 1421, 1718, 1751
AluI	AGCT	8 cut(s)	142, 599, 809, 1237, 1369, 1421, 1718, 1751
Alw26I	GTCTC	3 cut(s)	311, 1587, 1648
AlwI	GGATC	1 cut(s)	1739
AoxI	GGCC	2 cut(s)	400, 1261
ApeKI	GCWGC	2 cut(s)	491, 596
Asp700I	GAANNNNTTC	5 cut(s)	185, 198, 319, 713, 1161
AspS9I	GGNCC	2 cut(s)	400, 1596
AsuHPI	GGTGA	1 cut(s)	844
AvaII	GGWCC	1 cut(s)	1596
BaeI	ACNNNNGTAYC	2 cut(s)	678, 711
BalI	TGGCCA	1 cut(s)	1263
BanII	GRGCYC	1 cut(s)	1055
BbsI	GAAGAC	2 cut(s)	413, 1441
BbvCI	CCTCAGC	1 cut(s)	486
BbvI	GCAGC	2 cut(s)	503, 608
BccI	CCATC	5 cut(s)	613, 895, 1003, 1190, 1583
BcgI	CGANNNNNNTGC	2 cut(s)	1642, 1676
BciVI	GTATCC	1 cut(s)	679
BclI	TGATCA	1 cut(s)	697
BcoDI	GTCTC	3 cut(s)	311, 1587, 1648
BcuI	ACTAGT	1 cut(s)	691
BfaI	CTAG	4 cut(s)	129, 143, 692, 791
BfmI	CTRYAG	1 cut(s)	1689
BfuI	GTATCC	1 cut(s)	679
BglII	AGATCT	1 cut(s)	240
BisI	GCNGC	2 cut(s)	492, 597
BlsI	GCNGC	2 cut(s)	493, 598
Bme18I	GGWCC	1 cut(s)	1596
BmgT120I	GGNCC	2 cut(s)	400, 1596
BmiI	GGNNCC	2 cut(s)	976, 1054
BmsI	GCATC	7 cut(s)	163, 623, 1156, 1239, 1291, 1684, 1706
BpiI	GAAGAC	2 cut(s)	413, 1441
BplI	GAGNNNNNCTC	2 cut(s)	1436, 1468
BpmI	CTGGAG	2 cut(s)	729, 1569
Bpu10I	CCTNAGC	1 cut(s)	486
Bsa29I	ATCGAT	1 cut(s)	1116
BsaI	GGTCTC	2 cut(s)	311, 1587
BsaJI	CCNNGG	2 cut(s)	1056, 1615
BseCI	ATCGAT	1 cut(s)	1116
BseDI	CCNNGG	2 cut(s)	1056, 1615
BseGI	GGATG	6 cut(s)	178, 544, 638, 906, 1267, 1359
BseMII	CTCAG	4 cut(s)	251, 477, 1259, 1320
BseRI	GAGGAG	2 cut(s)	69, 72
BseXI	GCAGC	2 cut(s)	503, 608
BseYI	CCCAGC	2 cut(s)	1421, 1555
BsgI	GTGCAG	1 cut(s)	615
Bsh1236I	CGCG	1 cut(s)	208
BshFI	GGCC	2 cut(s)	402, 1263
BshVI	ATCGAT	1 cut(s)	1116
BsiSI	CCGG	1 cut(s)	536
BsmAI	GTCTC	3 cut(s)	311, 1587, 1648
BsnI	GGCC	2 cut(s)	402, 1263
Bso31I	GGTCTC	2 cut(s)	311, 1587
Bsp1286I	GDGCHC	1 cut(s)	1055
Bsp143I	GATC	5 cut(s)	240, 697, 1033, 1113, 1744
Bsp19I	CCATGG	1 cut(s)	1056
BspACI	CCGC	1 cut(s)	1526
BspANI	GGCC	2 cut(s)	402, 1263
BspCNI	CTCAG	4 cut(s)	250, 478, 1258, 1321
BspDI	ATCGAT	1 cut(s)	1116
BspFNI	CGCG	1 cut(s)	208
BspLI	GGNNCC	2 cut(s)	976, 1054
BspMAI	CTGCAG	1 cut(s)	1693
BspPI	GGATC	1 cut(s)	1739
BspTNI	GGTCTC	2 cut(s)	311, 1587
BssECI	CCNNGG	2 cut(s)	1056, 1615
BssMI	GATC	5 cut(s)	240, 697, 1033, 1113, 1744
BssT1I	CCWWGG	1 cut(s)	1056
Bst4CI	ACNGT	7 cut(s)	461, 593, 674, 989, 995, 1042, 1394
Bst6I	CTCTTC	2 cut(s)	34, 719
BstC8I	GCNNGC	3 cut(s)	140, 638, 1528
BstDEI	CTNAG	6 cut(s)	237, 486, 1245, 1329, 1346, 1731
BstDSI	CCRYGG	1 cut(s)	1056
BstF5I	GGATG	6 cut(s)	178, 544, 638, 906, 1267, 1359
BstFNI	CGCG	1 cut(s)	208
BstKTI	GATC	5 cut(s)	243, 700, 1036, 1116, 1747
BstMAI	GTCTC	3 cut(s)	311, 1587, 1648
BstMBI	GATC	5 cut(s)	240, 697, 1033, 1113, 1744
BstMWI	GCNNNNNNNGC	4 cut(s)	148, 205, 214, 491
BstNSI	RCATGY	1 cut(s)	24
BstSFI	CTRYAG	1 cut(s)	1689
BstUI	CGCG	1 cut(s)	208
BstV1I	GCAGC	2 cut(s)	503, 608
BstV2I	GAAGAC	2 cut(s)	413, 1441
BstX2I	RGATCY	2 cut(s)	240, 1744
BstXI	CCANNNNNNTGG	2 cut(s)	922, 1593
BstYI	RGATCY	2 cut(s)	240, 1744
Bsu15I	ATCGAT	1 cut(s)	1116
BsuI	GTATCC	1 cut(s)	679
BsuRI	GGCC	2 cut(s)	402, 1263
BsuTUI	ATCGAT	1 cut(s)	1116
BtgI	CCRYGG	1 cut(s)	1056
BtsCI	GGATG	6 cut(s)	178, 544, 638, 906, 1267, 1359
BtsIMutI	CAGTG	3 cut(s)	598, 803, 1076
Cac8I	GCNNGC	3 cut(s)	140, 638, 1528
Cfr13I	GGNCC	2 cut(s)	400, 1596
ClaI	ATCGAT	1 cut(s)	1116
CseI	GACGC	2 cut(s)	197, 890
Csp6I	GTAC	2 cut(s)	857, 1475
CviAII	CATG	4 cut(s)	21, 982, 1057, 1511
CviQI	GTAC	2 cut(s)	857, 1475
DdeI	CTNAG	6 cut(s)	237, 486, 1245, 1329, 1346, 1731
DpnI	GATC	5 cut(s)	242, 699, 1035, 1115, 1746
DpnII	GATC	5 cut(s)	240, 697, 1033, 1113, 1744
DrdI	GACNNNNNNGTC	1 cut(s)	303
DseDI	GACNNNNNNGTC	1 cut(s)	303
EaeI	YGGCCR	1 cut(s)	1261
Eam1104I	CTCTTC	2 cut(s)	34, 719
EarI	CTCTTC	2 cut(s)	34, 719
Eco130I	CCWWGG	1 cut(s)	1056
Eco24I	GRGCYC	1 cut(s)	1055
Eco31I	GGTCTC	2 cut(s)	311, 1587
Eco47I	GGWCC	1 cut(s)	1596
Eco57I	CTGAAG	1 cut(s)	200
EcoT14I	CCWWGG	1 cut(s)	1056
EcoT22I	ATGCAT	2 cut(s)	1149, 1699
EcoT38I	GRGCYC	1 cut(s)	1055
ErhI	CCWWGG	1 cut(s)	1056
FaeI	CATG	4 cut(s)	24, 985, 1060, 1514
FalI	AAGNNNNNCTT	2 cut(s)	1112, 1144
FatI	CATG	4 cut(s)	20, 981, 1056, 1510
FauI	CCCGC	1 cut(s)	1519
FauNDI	CATATG	2 cut(s)	970, 1152
FbaI	TGATCA	1 cut(s)	697
Fnu4HI	GCNGC	2 cut(s)	492, 597
FokI	GGATG	6 cut(s)	185, 551, 645, 913, 1254, 1366
FriOI	GRGCYC	1 cut(s)	1055
Fsp4HI	GCNGC	2 cut(s)	492, 597
FspBI	CTAG	4 cut(s)	129, 143, 692, 791
GluI	GCNGC	2 cut(s)	492, 597
GsaI	CCCAGC	2 cut(s)	1425, 1559
GsuI	CTGGAG	2 cut(s)	729, 1569
HaeIII	GGCC	2 cut(s)	402, 1263
HapII	CCGG	1 cut(s)	536
HgaI	GACGC	2 cut(s)	197, 890
Hin1II	CATG	4 cut(s)	24, 985, 1060, 1514
HincII	GTYRAC	1 cut(s)	880
HindII	GTYRAC	1 cut(s)	880
HinfI	GANTC	8 cut(s)	370, 772, 780, 835, 937, 1433, 1507, 1676
HpaII	CCGG	1 cut(s)	536
HphI	GGTGA	1 cut(s)	844
Hpy166II	GTNNAC	2 cut(s)	546, 880
Hpy188I	TCNGA	8 cut(s)	18, 240, 314, 325, 852, 1248, 1330, 1616
Hpy188III	TCNNGA	4 cut(s)	129, 746, 1166, 1586
Hpy8I	GTNNAC	2 cut(s)	546, 880
HpyAV	CCTTC	6 cut(s)	175, 228, 451, 874, 1351, 1400
HpyCH4III	ACNGT	7 cut(s)	461, 593, 674, 989, 995, 1042, 1394
HpyCH4IV	ACGT	1 cut(s)	750
HpyF10VI	GCNNNNNNNGC	4 cut(s)	148, 205, 214, 491
HpyF3I	CTNAG	6 cut(s)	237, 486, 1245, 1329, 1346, 1731
HpySE526I	ACGT	1 cut(s)	750
Hsp92II	CATG	4 cut(s)	24, 985, 1060, 1514
Ksp22I	TGATCA	1 cut(s)	697
Kzo9I	GATC	5 cut(s)	240, 697, 1033, 1113, 1744
LmnI	GCTCC	2 cut(s)	748, 1058
Lsp1109I	GCAGC	2 cut(s)	503, 608
LweI	GCATC	7 cut(s)	163, 623, 1156, 1239, 1291, 1684, 1706
MaeI	CTAG	4 cut(s)	129, 143, 692, 791
MaeII	ACGT	1 cut(s)	750
MaeIII	GTNAC	4 cut(s)	606, 754, 989, 1076
MalI	GATC	5 cut(s)	242, 699, 1035, 1115, 1746
MboI	GATC	5 cut(s)	240, 697, 1033, 1113, 1744
MboII	GAAGA	9 cut(s)	19, 21, 59, 400, 413, 628, 635, 706, 1441
MfeI	CAATTG	1 cut(s)	352
MflI	RGATCY	2 cut(s)	240, 1744
MhlI	GDGCHC	1 cut(s)	1055
MlsI	TGGCCA	1 cut(s)	1263
MluCI	AATT	7 cut(s)	315, 352, 404, 948, 1340, 1386, 1709
MluNI	TGGCCA	1 cut(s)	1263
MlyI	GAGTC	3 cut(s)	789, 844, 1685
MmeI	TCCRAC	2 cut(s)	41, 1574
Mox20I	TGGCCA	1 cut(s)	1263
Mph1103I	ATGCAT	2 cut(s)	1149, 1699
MroXI	GAANNNNTTC	5 cut(s)	185, 198, 319, 713, 1161
MscI	TGGCCA	1 cut(s)	1263
MseI	TTAA	5 cut(s)	657, 1062, 1535, 1625, 1766
MslI	CAYNNNNRTG	1 cut(s)	722
Msp20I	TGGCCA	1 cut(s)	1263
MspI	CCGG	1 cut(s)	536
MunI	CAATTG	1 cut(s)	352
MvnI	CGCG	1 cut(s)	208
MwoI	GCNNNNNNNGC	4 cut(s)	148, 205, 214, 491
NcoI	CCATGG	1 cut(s)	1056
NdeI	CATATG	2 cut(s)	970, 1152
NdeII	GATC	5 cut(s)	240, 697, 1033, 1113, 1744
NlaIII	CATG	4 cut(s)	24, 985, 1060, 1514
NlaIV	GGNNCC	2 cut(s)	976, 1054
NmuCI	GTSAC	1 cut(s)	754
NsiI	ATGCAT	2 cut(s)	1149, 1699
NspI	RCATGY	1 cut(s)	24
PciI	ACATGT	1 cut(s)	20
PdmI	GAANNNNTTC	5 cut(s)	185, 198, 319, 713, 1161
PfeI	GAWTC	5 cut(s)	370, 772, 937, 1433, 1507
PflFI	GACNNNGTC	1 cut(s)	752
PkrI	GCNGC	2 cut(s)	493, 598
PleI	GAGTC	3 cut(s)	788, 843, 1684
PpsI	GAGTC	3 cut(s)	788, 843, 1684
PscI	ACATGT	1 cut(s)	20
PsiI	TTATAA	1 cut(s)	1780
PspFI	CCCAGC	2 cut(s)	1421, 1555
PspN4I	GGNNCC	2 cut(s)	976, 1054
PspPI	GGNCC	2 cut(s)	400, 1596
PstI	CTGCAG	1 cut(s)	1693
PsuI	RGATCY	2 cut(s)	240, 1744
PsyI	GACNNNGTC	1 cut(s)	752
RsaI	GTAC	2 cut(s)	858, 1476
RsaNI	GTAC	2 cut(s)	857, 1475
RseI	CAYNNNNRTG	1 cut(s)	722
SaqAI	TTAA	5 cut(s)	657, 1062, 1535, 1625, 1766
SatI	GCNGC	2 cut(s)	492, 597
Sau3AI	GATC	5 cut(s)	240, 697, 1033, 1113, 1744
Sau96I	GGNCC	2 cut(s)	400, 1596
SchI	GAGTC	3 cut(s)	789, 844, 1685
SduI	GDGCHC	1 cut(s)	1055
SfaNI	GCATC	7 cut(s)	163, 623, 1156, 1239, 1291, 1684, 1706
SfcI	CTRYAG	1 cut(s)	1689
SinI	GGWCC	1 cut(s)	1596
SmiMI	CAYNNNNRTG	1 cut(s)	722
SpeI	ACTAGT	1 cut(s)	691
Sse9I	AATT	7 cut(s)	315, 352, 404, 948, 1340, 1386, 1709
SsiI	CCGC	1 cut(s)	1526
SspI	AATATT	2 cut(s)	1276, 1381
SspMI	CTAG	4 cut(s)	129, 143, 692, 791
StyI	CCWWGG	1 cut(s)	1056
TaaI	ACNGT	7 cut(s)	461, 593, 674, 989, 995, 1042, 1394
TaiI	ACGT	1 cut(s)	753
TaqI	TCGA	3 cut(s)	189, 669, 1116
TasI	AATT	7 cut(s)	315, 352, 404, 948, 1340, 1386, 1709
TatI	WGTACW	1 cut(s)	1474
TfiI	GAWTC	5 cut(s)	370, 772, 937, 1433, 1507
Tru1I	TTAA	5 cut(s)	657, 1062, 1535, 1625, 1766
Tru9I	TTAA	5 cut(s)	657, 1062, 1535, 1625, 1766
TscAI	CASTG	3 cut(s)	598, 803, 1076
TseFI	GTSAC	1 cut(s)	754
TseI	GCWGC	2 cut(s)	491, 596
Tsp45I	GTSAC	1 cut(s)	754
TspDTI	ATGAA	6 cut(s)	89, 207, 264, 840, 1370, 1499
TspGWI	ACGGA	2 cut(s)	218, 1107
TspRI	CASTG	3 cut(s)	598, 803, 1076
Tth111I	GACNNNGTC	1 cut(s)	752
VpaK11BI	GGWCC	1 cut(s)	1596
XbaI	TCTAGA	1 cut(s)	128
XceI	RCATGY	1 cut(s)	24
XmnI	GAANNNNTTC	5 cut(s)	185, 198, 319, 713, 1161
XspI	CTAG	4 cut(s)	129, 143, 692, 791
Zsp2I	ATGCAT	2 cut(s)	1149, 1699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.