Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004517

Physical Location & Seq

Genomic Coordinates Reverse (-)

22866615 .. 22867655

Gene Structure 1041 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00349710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGCTCTGTGTGTGTCTGCTGAGTTCATGTTGTGGGGAAGTAGTTGACCTACACATTCCACGAGACAGGAAAGCGATAGGCCTAAAGGTTATGCTTTTGCAGAATATGAAACTGAAGAGATTGCTGAGTATCTTTGTTAGGCTTTTCTCCGGTCTTGTGACTCTCTACAATCGAACACTCAAGTTTGCGATTTCTGGGCAAGACAAGCCTTCACCTAATGTTGCTTCTACGGTAATGCCTACAACCAATTTTTCTAACAAATTGAGGTCTCCCCCTGTACCTATTAACAATGTAGAAAACTTGCAGAATTCAATGAGCTTATCAGCACCCTGCAAAATTCCAGCTTATGCAGAAACTTATCCCTCGGTGCCCATTCCCCCTGGTGTAAATAACCAATCTAATGGATTACATTTGAATGGCAACAATTTCGAGTATAGTCGAAGAGTTATTGGGGTGACATTGGATACCATTAGTCTCCCCAGGTCACGCTGCTATGATATGAGTAATCCAATTTCCTATCCGTCCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

176

Amino Acids

19.48

Weight (kDa)

9.48

Isoelectric Point (pI)

51.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10110
fragaria_vesca	FvH4_2g00580 FvH4_2g00580 FvH4_3g25440 FvH4_3g25440 FvH4_3g25440 FvH4_3g25440 FvH4_3g25440 FvH4_3g25440
malus_domestica	MD10G1003200.v1.1
prunus_persica	Prupe.8G005800_v2.0.a1 Prupe.8G005800_v2.0.a1 Prupe.8G005800_v2.0.a1 Prupe.8G005800_v2.0.a1 Prupe.8G005800_v2.0.a1
pyrus_communis	pycom10g00260
rosa_chinensis	RchiOBHm_Chr6g0251031 RchiOBHm_Chr6g0280021
rosa_laevigata	RLG00000015489
rosa_multiflora	Rmu_sc0006638.1_g000018
rosa_roxburghii	Rroxscaffold_5G00349710 Rroxscaffold_7G00217110
rosa_rugosa	Rorug05G0499500 Rorug05G0499600 Rorug05G0499700 Rorug06G0244900
rosa_samantha	Rh6AG007700 Rh6BG003300 Rh6CG005200 Rh6DG005500 Rh6DG235800
rosa_wichuraiana	Rw6G000870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	367
AcsI	RAATTY	2 cut(s)	307, 336
AcuI	CTGAAG	1 cut(s)	134
AfaI	GTAC	1 cut(s)	279
AgsI	TTSAA	2 cut(s)	312, 415
AjnI	CCWGG	2 cut(s)	379, 479
AluBI	AGCT	2 cut(s)	318, 344
AluI	AGCT	2 cut(s)	318, 344
Alw26I	GTCTC	3 cut(s)	57, 273, 479
AoxI	GGCC	1 cut(s)	79
ApeKI	GCWGC	1 cut(s)	489
ApoI	RAATTY	2 cut(s)	307, 336
AsuHPI	GGTGA	2 cut(s)	204, 466
BaeGI	GKGCMC	1 cut(s)	372
BanI	GGYRCC	1 cut(s)	367
BauI	CACGAG	1 cut(s)	60
BbvI	GCAGC	1 cut(s)	476
BcgI	CGANNNNNNTGC	2 cut(s)	409, 443
BciT130I	CCWGG	2 cut(s)	381, 481
BciVI	GTATCC	1 cut(s)	457
BcoDI	GTCTC	3 cut(s)	57, 273, 479
BfuI	GTATCC	1 cut(s)	457
BisI	GCNGC	1 cut(s)	490
BlsI	GCNGC	1 cut(s)	491
Bme1390I	CCNGG	2 cut(s)	381, 481
BmiI	GGNNCC	1 cut(s)	369
BmrFI	CCNGG	2 cut(s)	381, 481
BpuEI	CTTGAG	1 cut(s)	164
BsaI	GGTCTC	1 cut(s)	273
BsaJI	CCNNGG	3 cut(s)	363, 379, 479
BsaWI	WCCGGW	1 cut(s)	149
BseBI	CCWGG	2 cut(s)	381, 481
BseDI	CCNNGG	3 cut(s)	363, 379, 479
BseMII	CTCAG	2 cut(s)	11, 116
BseSI	GKGCMC	1 cut(s)	372
BseXI	GCAGC	1 cut(s)	476
BshFI	GGCC	1 cut(s)	81
BshNI	GGYRCC	1 cut(s)	367
BsiSI	CCGG	1 cut(s)	150
BsmAI	GTCTC	3 cut(s)	57, 273, 479
BsnI	GGCC	1 cut(s)	81
Bso31I	GGTCTC	1 cut(s)	273
Bsp1286I	GDGCHC	1 cut(s)	372
BspANI	GGCC	1 cut(s)	81
BspCNI	CTCAG	2 cut(s)	12, 117
BspLI	GGNNCC	1 cut(s)	369
BspT107I	GGYRCC	1 cut(s)	367
BspTNI	GGTCTC	1 cut(s)	273
BssECI	CCNNGG	3 cut(s)	363, 379, 479
BssSI	CACGAG	1 cut(s)	60
Bst2BI	CACGAG	1 cut(s)	60
Bst2UI	CCWGG	2 cut(s)	381, 481
Bst4CI	ACNGT	1 cut(s)	232
Bst6I	CTCTTC	2 cut(s)	110, 436
BstDEI	CTNAG	2 cut(s)	20, 125
BstMAI	GTCTC	3 cut(s)	57, 273, 479
BstMWI	GCNNNNNNNGC	1 cut(s)	205
BstNI	CCWGG	2 cut(s)	381, 481
BstSCI	CCNGG	2 cut(s)	379, 479
BstSLI	GKGCMC	1 cut(s)	372
BstV1I	GCAGC	1 cut(s)	476
BstXI	CCANNNNNNTGG	1 cut(s)	401
BsuI	GTATCC	1 cut(s)	457
BsuRI	GGCC	1 cut(s)	81
Csp6I	GTAC	1 cut(s)	278
CviAII	CATG	1 cut(s)	27
CviJI	RGCY	5 cut(s)	81, 142, 208, 318, 344
CviKI_1	RGCY	5 cut(s)	81, 142, 208, 318, 344
CviQI	GTAC	1 cut(s)	278
DdeI	CTNAG	2 cut(s)	20, 125
Eam1104I	CTCTTC	2 cut(s)	110, 436
EarI	CTCTTC	2 cut(s)	110, 436
Eco147I	AGGCCT	1 cut(s)	81
Eco31I	GGTCTC	1 cut(s)	273
Eco57I	CTGAAG	1 cut(s)	134
EcoRI	GAATTC	1 cut(s)	307
EcoRII	CCWGG	2 cut(s)	379, 479
FaeI	CATG	1 cut(s)	30
FaiI	YATR	7 cut(s)	28, 92, 107, 348, 435, 495, 500
FatI	CATG	1 cut(s)	26
Fnu4HI	GCNGC	1 cut(s)	490
Fsp4HI	GCNGC	1 cut(s)	490
GluI	GCNGC	1 cut(s)	490
HaeIII	GGCC	1 cut(s)	81
HapII	CCGG	1 cut(s)	150
Hin1II	CATG	1 cut(s)	30
HincII	GTYRAC	1 cut(s)	46
HindII	GTYRAC	1 cut(s)	46
HinfI	GANTC	1 cut(s)	160
HpaII	CCGG	1 cut(s)	150
HphI	GGTGA	2 cut(s)	204, 466
Hpy166II	GTNNAC	1 cut(s)	46
Hpy8I	GTNNAC	1 cut(s)	46
HpyAV	CCTTC	1 cut(s)	219
HpyCH4III	ACNGT	1 cut(s)	232
HpyCH4V	TGCA	4 cut(s)	100, 304, 333, 350
HpyF10VI	GCNNNNNNNGC	1 cut(s)	205
HpyF3I	CTNAG	2 cut(s)	20, 125
Hsp92II	CATG	1 cut(s)	30
Lsp1109I	GCAGC	1 cut(s)	476
MaeIII	GTNAC	3 cut(s)	157, 454, 483
MboII	GAAGA	2 cut(s)	127, 453
MhlI	GDGCHC	1 cut(s)	372
MluCI	AATT	6 cut(s)	247, 260, 307, 336, 424, 510
MlyI	GAGTC	1 cut(s)	154
MnlI	CCTC	2 cut(s)	258, 373
MseI	TTAA	1 cut(s)	285
MslI	CAYNNNNRTG	1 cut(s)	414
MspI	CCGG	1 cut(s)	150
MspR9I	CCNGG	2 cut(s)	381, 481
MvaI	CCWGG	2 cut(s)	381, 481
MwoI	GCNNNNNNNGC	1 cut(s)	205
NlaIII	CATG	1 cut(s)	30
NlaIV	GGNNCC	1 cut(s)	369
NmuCI	GTSAC	3 cut(s)	157, 454, 483
PceI	AGGCCT	1 cut(s)	81
PkrI	GCNGC	1 cut(s)	491
PleI	GAGTC	1 cut(s)	154
PpsI	GAGTC	1 cut(s)	154
Psp6I	CCWGG	2 cut(s)	379, 479
PspGI	CCWGG	2 cut(s)	379, 479
PspN4I	GGNNCC	1 cut(s)	369
RsaI	GTAC	1 cut(s)	279
RsaNI	GTAC	1 cut(s)	278
RseI	CAYNNNNRTG	1 cut(s)	414
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	1 cut(s)	490
SchI	GAGTC	1 cut(s)	154
ScrFI	CCNGG	2 cut(s)	381, 481
SduI	GDGCHC	1 cut(s)	372
SetI	ASST	8 cut(s)	51, 90, 217, 269, 283, 320, 346, 485
SmiMI	CAYNNNNRTG	1 cut(s)	414
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
Sse9I	AATT	6 cut(s)	247, 260, 307, 336, 424, 510
SseBI	AGGCCT	1 cut(s)	81
StuI	AGGCCT	1 cut(s)	81
StyD4I	CCNGG	2 cut(s)	379, 479
TaaI	ACNGT	1 cut(s)	232
TaqI	TCGA	3 cut(s)	172, 429, 439
TasI	AATT	6 cut(s)	247, 260, 307, 336, 424, 510
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TseFI	GTSAC	3 cut(s)	157, 454, 483
TseI	GCWGC	1 cut(s)	489
Tsp45I	GTSAC	3 cut(s)	157, 454, 483
TspDTI	ATGAA	2 cut(s)	15, 122
TspGWI	ACGGA	1 cut(s)	510
XapI	RAATTY	2 cut(s)	307, 336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.