Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010656

Physical Location & Seq

Genomic Coordinates Forward (+)

6847112 .. 6849317

Gene Structure 2206 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G11240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGATGAGACTTTACTTGACGATATAATACGACGGCTTTTGGCGACGAATAATGGAAGGACGGTGAAGCAAGCACAGATTACTGAGACGGAGATACGTCAGCTATGTTTAGCTTCAAAAGAGGTTTTTCTCAGTCAGCCTAATCTCCTCGAGCTCGAGGCTCCTATCAAGATTTGCGGAGATGTTCATGGTCAGTTTCCAGACCTCTTGCGGTTGTTTGAGTATGGTGGTTATCCACCAGCTGCGAACTACTTGTTTCTTGGGGATTATGTTGATCGTGGTAAGCAGAGCATAGAGACGATATGCCTTCTTCTTGCCTATAAGGTCAAATACAAGTTCAACTTCTTTCTTCTCAGAGGCAATCACGAATGTGCTTCAATCAACCGTGTATATGGATTCTACGATGAATGCAAAAGAAGATATAATGTTCGCTTATGGAAAACATTCACCGAGTGCTTCAACTGTCTGCCTGTTTCTGCTCTCATTGATGATAAGATCCTCTGCATGCATGGTGGACTATCGCCTGATATTAAGAGCTTAGATGACATCAGGAGAATTCCTCGTCCTATTGACGTTCCTGATCAGGGCATTCTTTGTGATTTGTTGTGGGCTGATCCTGACAGAGAGATTCAAGGCTGGGGGGAGAATGACAGAGGTGTCTCTTATACATTTGGGGCTGACAAAGTAGCTGAGTTCCTTCAAACTCATGACCTTGATCTTATATGCCGAGCTCATCAGGTTGTAGAAGATGGATACGAGTTCTTTGCAAAGAGACAACTAGTGACAATATTCTCTGCACCCAATTACTGTGGCGAGTTTGACAATGCTGGTGCATTGATGAGTGTTGATGATAGCTTAACATGTTCATTCCAAATCCTTAAGGCATCTGAGAAGAAAGGAAGATTTGGATTCAACAACAATGTTCCTAGACCAGGAACCCCACCTCATAAGGGTGGAAAAGGTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000164 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008287 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0140096 GO:1901564 GO:1902494 GO:1903293

KEGG Pathways

Metabolic & Signaling

ko03015 ko04022 ko04024 ko04113 ko04114 ko04218 ko04261 ko04270 ko04390 ko04510 ko04611 ko04720 ko04728 ko04750 ko04810 ko04910 ko04921 ko04931 ko05031 ko05034 ko05168 ko05205 map03015 map04022 map04024 map04113 map04114 map04218 map04261 map04270 map04390 map04510 map04611 map04720 map04728 map04750 map04810 map04910 map04921 map04931 map05031 map05034 map05168 map05205

Pfam Domains

Protein Families

Metallophos STPPase_N

Protein Analysis

322

Amino Acids

36.57

Weight (kDa)

5.76

Isoelectric Point (pI)

42.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STPPase_N	PF16891	6 - 53	3e-19	Serine-threonine protein phosphatase N-terminal domain
Metallophos	PF00149	55 - 248	6.8e-50	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010656)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64040 AT4G11240
fragaria_vesca	FvH4_5g03260
malus_domestica	MD14G1112500.v1.1 MD14G1112800.v1.1 MD14G1112900.v1.1
prunus_persica	Prupe.5G107100_v2.0.a1
pyrus_communis	pycom14g10790
rosa_chinensis	RchiOBHm_Chr7g0196511
rosa_laevigata	RLG00000004008
rosa_multiflora	Rmu_sc0013350.1_g000011 Rmu_sc0019310.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259240
rosa_rugosa	Rorug07G0034200 Rorug07G0034300
rosa_samantha	Rh7AG158400 Rh7BG160400 Rh7CG166800 Rh7DG159600
rosa_wichuraiana	Rw7G013840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	656
AciI	CCGC	2 cut(s)	177, 211
AclWI	GGATC	2 cut(s)	490, 608
AcsI	RAATTY	1 cut(s)	555
AdeI	CACNNNGTG	1 cut(s)	453
AfiI	CCNNNNNNNGG	3 cut(s)	584, 932, 950
AflII	CTTAAG	1 cut(s)	878
AflIII	ACRYGT	1 cut(s)	860
AgsI	TTSAA	7 cut(s)	117, 340, 378, 460, 632, 701, 913
AhlI	ACTAGT	1 cut(s)	778
AjnI	CCWGG	1 cut(s)	931
AleI	CACNNNNGTG	1 cut(s)	369
AluBI	AGCT	8 cut(s)	103, 113, 154, 242, 537, 689, 731, 855
AluI	AGCT	8 cut(s)	103, 113, 154, 242, 537, 689, 731, 855
Alw21I	GWGCWC	2 cut(s)	156, 733
Alw26I	GTCTC	5 cut(s)	2, 80, 290, 664, 766
AlwI	GGATC	2 cut(s)	490, 608
Ama87I	CYCGRG	2 cut(s)	149, 155
ApeKI	GCWGC	1 cut(s)	242
ApoI	RAATTY	1 cut(s)	555
Asp700I	GAANNNNTTC	1 cut(s)	443
AsuHPI	GGTGA	2 cut(s)	76, 439
AvaI	CYCGRG	2 cut(s)	149, 155
BanII	GRGCYC	2 cut(s)	156, 733
Bbv12I	GWGCWC	2 cut(s)	156, 733
BbvI	GCAGC	1 cut(s)	229
BccI	CCATC	1 cut(s)	743
BceAI	ACGGC	1 cut(s)	50
BcgI	CGANNNNNNTGC	2 cut(s)	746, 780
BciT130I	CCWGG	1 cut(s)	933
BciVI	GTATCC	1 cut(s)	746
BclI	TGATCA	1 cut(s)	580
BcoDI	GTCTC	5 cut(s)	2, 80, 290, 664, 766
BcuI	ACTAGT	1 cut(s)	778
BfaI	CTAG	2 cut(s)	779, 927
BfrI	CTTAAG	1 cut(s)	878
BfuI	GTATCC	1 cut(s)	746
BisI	GCNGC	1 cut(s)	243
BlsI	GCNGC	1 cut(s)	244
Bme1390I	CCNGG	1 cut(s)	933
BmeT110I	CYCGRG	2 cut(s)	149, 155
BmiI	GGNNCC	2 cut(s)	162, 937
BmrFI	CCNGG	1 cut(s)	933
BmsI	GCATC	1 cut(s)	893
BplI	GAGNNNNNCTC	2 cut(s)	544, 576
Bsc4I	CCNNNNNNNGG	3 cut(s)	584, 932, 950
BseBI	CCWGG	1 cut(s)	933
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	3 cut(s)	584, 932, 950
BseMII	CTCAG	5 cut(s)	75, 145, 367, 681, 879
BseRI	GAGGAG	1 cut(s)	137
BseXI	GCAGC	1 cut(s)	229
BseYI	CCCAGC	1 cut(s)	636
BsgI	GTGCAG	1 cut(s)	780
BsiHKAI	GWGCWC	2 cut(s)	156, 733
BsiHKCI	CYCGRG	2 cut(s)	149, 155
BslI	CCNNNNNNNGG	3 cut(s)	584, 932, 950
BsmAI	GTCTC	5 cut(s)	2, 80, 290, 664, 766
BsmBI	CGTCTC	2 cut(s)	80, 290
BsmI	GAATGC	2 cut(s)	413, 588
BsoBI	CYCGRG	2 cut(s)	149, 155
Bsp1286I	GDGCHC	2 cut(s)	156, 733
Bsp143I	GATC	5 cut(s)	274, 495, 580, 613, 715
BspACI	CCGC	2 cut(s)	177, 211
BspCNI	CTCAG	5 cut(s)	76, 144, 366, 682, 880
BspHI	TCATGA	1 cut(s)	706
BspLI	GGNNCC	2 cut(s)	162, 937
BspPI	GGATC	2 cut(s)	490, 608
BspTI	CTTAAG	1 cut(s)	878
BssMI	GATC	5 cut(s)	274, 495, 580, 613, 715
Bst2UI	CCWGG	1 cut(s)	933
Bst4CI	ACNGT	4 cut(s)	64, 386, 464, 809
BstAFI	CTTAAG	1 cut(s)	878
BstC8I	GCNNGC	2 cut(s)	72, 506
BstDEI	CTNAG	6 cut(s)	84, 131, 353, 538, 690, 888
BstENI	CCTNNNNNAGG	1 cut(s)	930
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	5 cut(s)	277, 498, 583, 616, 718
BstMAI	GTCTC	5 cut(s)	2, 80, 290, 664, 766
BstMBI	GATC	5 cut(s)	274, 495, 580, 613, 715
BstNI	CCWGG	1 cut(s)	933
BstNSI	RCATGY	2 cut(s)	508, 864
BstSCI	CCNGG	1 cut(s)	931
BstV1I	GCAGC	1 cut(s)	229
BstX2I	RGATCY	1 cut(s)	495
BstYI	RGATCY	1 cut(s)	495
BsuI	GTATCC	1 cut(s)	746
BtsCI	GGATG	1 cut(s)	10
Cac8I	GCNNGC	2 cut(s)	72, 506
CciI	TCATGA	1 cut(s)	706
CspCI	CAANNNNNGTGG	2 cut(s)	790, 825
CviAII	CATG	5 cut(s)	188, 505, 509, 707, 861
DdeI	CTNAG	6 cut(s)	84, 131, 353, 538, 690, 888
DpnI	GATC	5 cut(s)	276, 497, 582, 615, 717
DpnII	GATC	5 cut(s)	274, 495, 580, 613, 715
DraIII	CACNNNGTG	1 cut(s)	453
DrdI	GACNNNNNNGTC	1 cut(s)	656
DseDI	GACNNNNNNGTC	1 cut(s)	656
Ecl136II	GAGCTC	2 cut(s)	154, 731
Eco24I	GRGCYC	2 cut(s)	156, 733
Eco53kI	GAGCTC	2 cut(s)	154, 731
Eco88I	CYCGRG	2 cut(s)	149, 155
EcoICRI	GAGCTC	2 cut(s)	154, 731
EcoNI	CCTNNNNNAGG	1 cut(s)	930
EcoRI	GAATTC	1 cut(s)	555
EcoRII	CCWGG	1 cut(s)	931
EcoT22I	ATGCAT	1 cut(s)	510
EcoT38I	GRGCYC	2 cut(s)	156, 733
Esp3I	CGTCTC	2 cut(s)	80, 290
FaeI	CATG	5 cut(s)	191, 508, 512, 710, 864
FalI	AAGNNNNNCTT	2 cut(s)	326, 358
FatI	CATG	5 cut(s)	187, 504, 508, 706, 860
FbaI	TGATCA	1 cut(s)	580
Fnu4HI	GCNGC	1 cut(s)	243
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	2 cut(s)	156, 733
Fsp4HI	GCNGC	1 cut(s)	243
FspBI	CTAG	2 cut(s)	779, 927
GluI	GCNGC	1 cut(s)	243
GsaI	CCCAGC	1 cut(s)	640
Hin1II	CATG	5 cut(s)	191, 508, 512, 710, 864
HinfI	GANTC	3 cut(s)	396, 628, 909
HphI	GGTGA	2 cut(s)	76, 439
Hpy166II	GTNNAC	1 cut(s)	515
Hpy188I	TCNGA	2 cut(s)	356, 889
Hpy188III	TCNNGA	7 cut(s)	169, 200, 365, 550, 578, 617, 707
Hpy8I	GTNNAC	1 cut(s)	515
Hpy99I	CGWCG	2 cut(s)	36, 49
HpyAV	CCTTC	3 cut(s)	51, 317, 707
HpyCH4III	ACNGT	4 cut(s)	64, 386, 464, 809
HpyCH4IV	ACGT	2 cut(s)	97, 573
HpyCH4V	TGCA	6 cut(s)	411, 504, 508, 767, 797, 833
HpyF3I	CTNAG	6 cut(s)	84, 131, 353, 538, 690, 888
HpySE526I	ACGT	2 cut(s)	97, 573
Hsp92II	CATG	5 cut(s)	191, 508, 512, 710, 864
Ksp22I	TGATCA	1 cut(s)	580
Kzo9I	GATC	5 cut(s)	274, 495, 580, 613, 715
LmnI	GCTCC	1 cut(s)	166
Lsp1109I	GCAGC	1 cut(s)	229
LweI	GCATC	1 cut(s)	893
MaeI	CTAG	2 cut(s)	779, 927
MaeII	ACGT	2 cut(s)	97, 573
MaeIII	GTNAC	1 cut(s)	781
MalI	GATC	5 cut(s)	276, 497, 582, 615, 717
MboI	GATC	5 cut(s)	274, 495, 580, 613, 715
MboII	GAAGA	6 cut(s)	302, 341, 429, 758, 904, 912
MflI	RGATCY	1 cut(s)	495
MhlI	GDGCHC	2 cut(s)	156, 733
MluCI	AATT	2 cut(s)	555, 802
MnlI	CCTC	9 cut(s)	115, 151, 158, 215, 350, 509, 570, 647, 954
Mph1103I	ATGCAT	1 cut(s)	510
MroXI	GAANNNNTTC	1 cut(s)	443
MseI	TTAA	4 cut(s)	531, 857, 879, 967
MslI	CAYNNNNRTG	2 cut(s)	369, 951
MspA1I	CMGCKG	1 cut(s)	242
MspCI	CTTAAG	1 cut(s)	878
MspR9I	CCNGG	1 cut(s)	933
Mva1269I	GAATGC	2 cut(s)	413, 588
MvaI	CCWGG	1 cut(s)	933
NdeII	GATC	5 cut(s)	274, 495, 580, 613, 715
NlaIII	CATG	5 cut(s)	191, 508, 512, 710, 864
NlaIV	GGNNCC	2 cut(s)	162, 937
NmeAIII	GCCGAG	1 cut(s)	752
NmuCI	GTSAC	1 cut(s)	781
NsiI	ATGCAT	1 cut(s)	510
NspI	RCATGY	2 cut(s)	508, 864
OliI	CACNNNNGTG	1 cut(s)	369
PaeI	GCATGC	1 cut(s)	508
PaeR7I	CTCGAG	2 cut(s)	149, 155
PagI	TCATGA	1 cut(s)	706
PciI	ACATGT	1 cut(s)	860
PctI	GAATGC	2 cut(s)	413, 588
PdmI	GAANNNNTTC	1 cut(s)	443
PfeI	GAWTC	3 cut(s)	396, 628, 909
PkrI	GCNGC	1 cut(s)	244
PscI	ACATGT	1 cut(s)	860
Psp124BI	GAGCTC	2 cut(s)	156, 733
Psp6I	CCWGG	1 cut(s)	931
PspFI	CCCAGC	1 cut(s)	636
PspGI	CCWGG	1 cut(s)	931
PspN4I	GGNNCC	2 cut(s)	162, 937
PspXI	VCTCGAGB	2 cut(s)	149, 155
PsuI	RGATCY	1 cut(s)	495
PvuII	CAGCTG	1 cut(s)	242
RseI	CAYNNNNRTG	2 cut(s)	369, 951
SacI	GAGCTC	2 cut(s)	156, 733
SaqAI	TTAA	4 cut(s)	531, 857, 879, 967
SatI	GCNGC	1 cut(s)	243
Sau3AI	GATC	5 cut(s)	274, 495, 580, 613, 715
ScrFI	CCNGG	1 cut(s)	933
SduI	GDGCHC	2 cut(s)	156, 733
SfaNI	GCATC	1 cut(s)	893
Sfr274I	CTCGAG	2 cut(s)	149, 155
SlaI	CTCGAG	2 cut(s)	149, 155
SmiMI	CAYNNNNRTG	2 cut(s)	369, 951
SmlI	CTYRAG	3 cut(s)	149, 155, 878
SmoI	CTYRAG	3 cut(s)	149, 155, 878
SpeI	ACTAGT	1 cut(s)	778
SphI	GCATGC	1 cut(s)	508
Sse9I	AATT	2 cut(s)	555, 802
SsiI	CCGC	2 cut(s)	177, 211
SspI	AATATT	1 cut(s)	789
SspMI	CTAG	2 cut(s)	779, 927
SstI	GAGCTC	2 cut(s)	156, 733
StyD4I	CCNGG	1 cut(s)	931
TaaI	ACNGT	4 cut(s)	64, 386, 464, 809
TaiI	ACGT	2 cut(s)	100, 576
TaqI	TCGA	2 cut(s)	150, 156
TasI	AATT	2 cut(s)	555, 802
TfiI	GAWTC	3 cut(s)	396, 628, 909
Tru1I	TTAA	4 cut(s)	531, 857, 879, 967
Tru9I	TTAA	4 cut(s)	531, 857, 879, 967
TseFI	GTSAC	1 cut(s)	781
TseI	GCWGC	1 cut(s)	242
Tsp45I	GTSAC	1 cut(s)	781
TspDTI	ATGAA	3 cut(s)	176, 420, 855
TspGWI	ACGGA	1 cut(s)	104
Vha464I	CTTAAG	1 cut(s)	878
XagI	CCTNNNNNAGG	1 cut(s)	930
XapI	RAATTY	1 cut(s)	555
XceI	RCATGY	2 cut(s)	508, 864
XhoI	CTCGAG	2 cut(s)	149, 155
XmnI	GAANNNNTTC	1 cut(s)	443
XspI	CTAG	2 cut(s)	779, 927
Zsp2I	ATGCAT	1 cut(s)	510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.