Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019310.1

Orthogroup ID

OG0010656

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2329

Gene Structure 2329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019310.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 785 bp

gagatgttcatggtcagttttctgatctcttgcgtttgtttgagtatggtgggtacccacctgaagccaactatttattcctaggggactatgttgatcgtgggaagcaaagcatagagacaatatgccttctccttgcatataagattaaatacaaggagaacttcttcctcctcagaggcaaccatgaatgtgcttccatcaaccgcatatatgggttctatgatgagtgcaagagaagatttaatgttcgtatttggaaggtatttactgactgcttcaactgtctgcctgtcgctgctcttgttgatgagaagatcctttgcatgcatggtggtctatctcctgatttgaaaaacttagatcagattaggaatattgcccgcccagtggacgtaccagatcagggccttctctgtgatctattatgggctgatcctgataaagatgttgaaggttggggagagaatgatcgtggtgtgtcatatacatttggggctgacaaggttgctgaatttctccaaaaacatgaccttgaccttgtctgccgtgctcaccaggtcgtggaagatggatatgagttttttggaaagaggaagctggtgacaatattttcagcaccaaattactgtggtgagtttgataatgctggtgccatgatgagtgtggatgatacattgacatgttccttccagatcttgaaagcatctgagaagaaaggaaagcttggtgtaggcagcaacatgttaagaccaggaactccacctcataagggtaagggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03015 ko04022 ko04024 ko04113 ko04114 ko04218 ko04261 ko04270 ko04390 ko04510 ko04611 ko04720 ko04728 ko04750 ko04810 ko04910 ko04921 ko04931 ko05031 ko05034 ko05168 ko05205 map03015 map04022 map04024 map04113 map04114 map04218 map04261 map04270 map04390 map04510 map04611 map04720 map04728 map04750 map04810 map04910 map04921 map04931 map05031 map05034 map05168 map05205

Pfam Domains

Protein Families

Metallophos STPPase_N

Protein Analysis

260

Amino Acids

29.4

Weight (kDa)

5.73

Isoelectric Point (pI)

34.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010656)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64040 AT4G11240
fragaria_vesca	FvH4_5g03260
malus_domestica	MD14G1112500.v1.1 MD14G1112800.v1.1 MD14G1112900.v1.1
prunus_persica	Prupe.5G107100_v2.0.a1
pyrus_communis	pycom14g10790
rosa_chinensis	RchiOBHm_Chr7g0196511
rosa_laevigata	RLG00000004008
rosa_multiflora	Rmu_sc0013350.1_g000011 Rmu_sc0019310.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259240
rosa_rugosa	Rorug07G0034200 Rorug07G0034300
rosa_samantha	Rh7AG158400 Rh7BG160400 Rh7CG166800 Rh7DG159600
rosa_wichuraiana	Rw7G013840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	53
AccB1I	GGYRCC	2 cut(s)	53, 652
AccB7I	CCANNNNNTGG	1 cut(s)	564
AciI	CCGC	2 cut(s)	207, 384
AclWI	GGATC	2 cut(s)	312, 430
AcsI	RAATTY	1 cut(s)	514
AcuI	CTGAAG	1 cut(s)	83
AfaI	GTAC	2 cut(s)	55, 398
AfiI	CCNNNNNNNGG	4 cut(s)	390, 406, 564, 772
AflIII	ACRYGT	2 cut(s)	682, 743
AgsI	TTSAA	4 cut(s)	282, 354, 454, 702
AjnI	CCWGG	2 cut(s)	557, 753
AjuI	GAANNNNNNNTTGG	2 cut(s)	61, 93
AluBI	AGCT	2 cut(s)	600, 726
AluI	AGCT	2 cut(s)	600, 726
Alw21I	GWGCWC	1 cut(s)	555
Alw26I	GTCTC	1 cut(s)	112
AlwI	GGATC	2 cut(s)	312, 430
AoxI	GGCC	1 cut(s)	408
ApeKI	GCWGC	2 cut(s)	298, 737
ApoI	RAATTY	1 cut(s)	514
Asp700I	GAANNNNTTC	1 cut(s)	166
Asp718I	GGTACC	1 cut(s)	53
AspA2I	CCTAGG	1 cut(s)	81
AspS9I	GGNCC	1 cut(s)	408
AsuHPI	GGTGA	3 cut(s)	547, 615, 646
AvrII	CCTAGG	1 cut(s)	81
BanI	GGYRCC	2 cut(s)	53, 652
Bbv12I	GWGCWC	1 cut(s)	555
BbvI	GCAGC	2 cut(s)	285, 749
BccI	CCATC	2 cut(s)	208, 565
BceAI	ACGGC	1 cut(s)	533
BciT130I	CCWGG	2 cut(s)	559, 755
BcoDI	GTCTC	1 cut(s)	112
BfaI	CTAG	1 cut(s)	82
BglII	AGATCT	1 cut(s)	695
BisI	GCNGC	2 cut(s)	299, 738
BlnI	CCTAGG	1 cut(s)	81
BlsI	GCNGC	2 cut(s)	300, 739
Bme1390I	CCNGG	2 cut(s)	559, 755
BmgT120I	GGNCC	1 cut(s)	408
BmiI	GGNNCC	2 cut(s)	55, 654
BmrFI	CCNGG	2 cut(s)	559, 755
BmrI	ACTGGG	1 cut(s)	382
BmsI	GCATC	1 cut(s)	715
BmuI	ACTGGG	1 cut(s)	382
BsaJI	CCNNGG	1 cut(s)	81
Bsc4I	CCNNNNNNNGG	4 cut(s)	390, 406, 564, 772
Bse1I	ACTGG	1 cut(s)	388
BseBI	CCWGG	2 cut(s)	559, 755
BseDI	CCNNGG	1 cut(s)	81
BseGI	GGATG	1 cut(s)	675
BseLI	CCNNNNNNNGG	4 cut(s)	390, 406, 564, 772
BseMII	CTCAG	2 cut(s)	189, 701
BseNI	ACTGG	1 cut(s)	388
BseRI	GAGGAG	1 cut(s)	163
BseXI	GCAGC	2 cut(s)	285, 749
BshFI	GGCC	1 cut(s)	410
BshNI	GGYRCC	2 cut(s)	53, 652
BsiHKAI	GWGCWC	1 cut(s)	555
BslFI	GGGAC	1 cut(s)	100
BslI	CCNNNNNNNGG	4 cut(s)	390, 406, 564, 772
BsmAI	GTCTC	1 cut(s)	112
BsmFI	GGGAC	1 cut(s)	100
BsnI	GGCC	1 cut(s)	410
Bsp1286I	GDGCHC	1 cut(s)	555
Bsp143I	GATC	9 cut(s)	24, 96, 317, 363, 402, 420, 435, 471, 695
BspACI	CCGC	2 cut(s)	207, 384
BspANI	GGCC	1 cut(s)	410
BspCNI	CTCAG	2 cut(s)	188, 702
BspLI	GGNNCC	2 cut(s)	55, 654
BspPI	GGATC	2 cut(s)	312, 430
BspT107I	GGYRCC	2 cut(s)	53, 652
BsrI	ACTGG	1 cut(s)	388
BssECI	CCNNGG	1 cut(s)	81
BssMI	GATC	9 cut(s)	24, 96, 317, 363, 402, 420, 435, 471, 695
BssT1I	CCWWGG	1 cut(s)	81
Bst2UI	CCWGG	2 cut(s)	559, 755
Bst4CI	ACNGT	2 cut(s)	286, 631
BstC8I	GCNNGC	2 cut(s)	328, 384
BstDEI	CTNAG	3 cut(s)	175, 360, 710
BstF5I	GGATG	1 cut(s)	675
BstKTI	GATC	9 cut(s)	27, 99, 320, 366, 405, 423, 438, 474, 698
BstMAI	GTCTC	1 cut(s)	112
BstMBI	GATC	9 cut(s)	24, 96, 317, 363, 402, 420, 435, 471, 695
BstNI	CCWGG	2 cut(s)	559, 755
BstNSI	RCATGY	3 cut(s)	330, 686, 747
BstSCI	CCNGG	2 cut(s)	557, 753
BstV1I	GCAGC	2 cut(s)	285, 749
BstX2I	RGATCY	2 cut(s)	317, 695
BstYI	RGATCY	2 cut(s)	317, 695
BsuRI	GGCC	1 cut(s)	410
BtsCI	GGATG	1 cut(s)	675
BtsIMutI	CAGTG	1 cut(s)	395
Cac8I	GCNNGC	2 cut(s)	328, 384
Cfr13I	GGNCC	1 cut(s)	408
CsiI	ACCWGGT	1 cut(s)	557
Csp6I	GTAC	2 cut(s)	54, 397
CviAII	CATG	8 cut(s)	10, 187, 327, 331, 529, 657, 683, 744
CviJI	RGCY	7 cut(s)	67, 410, 433, 499, 600, 726, 782
CviKI_1	RGCY	7 cut(s)	67, 410, 433, 499, 600, 726, 782
CviQI	GTAC	2 cut(s)	54, 397
DdeI	CTNAG	3 cut(s)	175, 360, 710
DpnI	GATC	9 cut(s)	26, 98, 319, 365, 404, 422, 437, 473, 697
DpnII	GATC	9 cut(s)	24, 96, 317, 363, 402, 420, 435, 471, 695
Eco130I	CCWWGG	1 cut(s)	81
Eco57I	CTGAAG	1 cut(s)	83
EcoO109I	RGGNCCY	1 cut(s)	408
EcoRII	CCWGG	2 cut(s)	557, 753
EcoT14I	CCWWGG	1 cut(s)	81
EcoT22I	ATGCAT	1 cut(s)	332
ErhI	CCWWGG	1 cut(s)	81
FaeI	CATG	8 cut(s)	13, 190, 330, 334, 532, 660, 686, 747
FalI	AAGNNNNNCTT	4 cut(s)	148, 180, 710, 742
FaqI	GGGAC	1 cut(s)	100
FatI	CATG	8 cut(s)	9, 186, 326, 330, 528, 656, 682, 743
FauI	CCCGC	1 cut(s)	391
Fnu4HI	GCNGC	2 cut(s)	299, 738
FokI	GGATG	1 cut(s)	682
Fsp4HI	GCNGC	2 cut(s)	299, 738
FspBI	CTAG	1 cut(s)	82
GluI	GCNGC	2 cut(s)	299, 738
HaeIII	GGCC	1 cut(s)	410
Hin1II	CATG	8 cut(s)	13, 190, 330, 334, 532, 660, 686, 747
HindIII	AAGCTT	1 cut(s)	724
HphI	GGTGA	3 cut(s)	547, 615, 646
Hpy166II	GTNNAC	1 cut(s)	393
Hpy188I	TCNGA	4 cut(s)	24, 178, 368, 711
Hpy188III	TCNNGA	4 cut(s)	346, 439, 693, 699
Hpy8I	GTNNAC	1 cut(s)	393
HpyAV	CCTTC	5 cut(s)	139, 255, 421, 448, 699
HpyCH4III	ACNGT	2 cut(s)	286, 631
HpyCH4IV	ACGT	1 cut(s)	395
HpyCH4V	TGCA	4 cut(s)	139, 233, 326, 330
HpyF3I	CTNAG	3 cut(s)	175, 360, 710
HpySE526I	ACGT	1 cut(s)	395
Hsp92II	CATG	8 cut(s)	13, 190, 330, 334, 532, 660, 686, 747
KpnI	GGTACC	1 cut(s)	57
Kzo9I	GATC	9 cut(s)	24, 96, 317, 363, 402, 420, 435, 471, 695
Lsp1109I	GCAGC	2 cut(s)	285, 749
LweI	GCATC	1 cut(s)	715
MabI	ACCWGGT	1 cut(s)	557
MaeI	CTAG	1 cut(s)	82
MaeII	ACGT	1 cut(s)	395
MaeIII	GTNAC	1 cut(s)	603
MalI	GATC	9 cut(s)	26, 98, 319, 365, 404, 422, 437, 473, 697
MboI	GATC	9 cut(s)	24, 96, 317, 363, 402, 420, 435, 471, 695
MboII	GAAGA	5 cut(s)	159, 251, 327, 580, 726
MflI	RGATCY	2 cut(s)	317, 695
MhlI	GDGCHC	1 cut(s)	555
MluCI	AATT	2 cut(s)	514, 624
MnlI	CCTC	5 cut(s)	172, 181, 184, 587, 776
Mph1103I	ATGCAT	1 cut(s)	332
MroXI	GAANNNNTTC	1 cut(s)	166
MseI	TTAA	3 cut(s)	149, 245, 748
MslI	CAYNNNNRTG	2 cut(s)	191, 681
MspR9I	CCNGG	2 cut(s)	559, 755
MvaI	CCWGG	2 cut(s)	559, 755
NdeII	GATC	9 cut(s)	24, 96, 317, 363, 402, 420, 435, 471, 695
NlaIII	CATG	8 cut(s)	13, 190, 330, 334, 532, 660, 686, 747
NlaIV	GGNNCC	2 cut(s)	55, 654
NmuCI	GTSAC	1 cut(s)	603
NsiI	ATGCAT	1 cut(s)	332
NspI	RCATGY	3 cut(s)	330, 686, 747
PaeI	GCATGC	1 cut(s)	330
PciI	ACATGT	2 cut(s)	682, 743
PdmI	GAANNNNTTC	1 cut(s)	166
PflFI	GACNNNGTC	1 cut(s)	541
PflMI	CCANNNNNTGG	1 cut(s)	564
PkrI	GCNGC	2 cut(s)	300, 739
PscI	ACATGT	2 cut(s)	682, 743
Psp6I	CCWGG	2 cut(s)	557, 753
PspGI	CCWGG	2 cut(s)	557, 753
PspN4I	GGNNCC	2 cut(s)	55, 654
PspPI	GGNCC	1 cut(s)	408
PsuI	RGATCY	2 cut(s)	317, 695
PsyI	GACNNNGTC	1 cut(s)	541
RsaI	GTAC	2 cut(s)	55, 398
RsaNI	GTAC	2 cut(s)	54, 397
RseI	CAYNNNNRTG	2 cut(s)	191, 681
SaqAI	TTAA	3 cut(s)	149, 245, 748
SatI	GCNGC	2 cut(s)	299, 738
Sau3AI	GATC	9 cut(s)	24, 96, 317, 363, 402, 420, 435, 471, 695
Sau96I	GGNCC	1 cut(s)	408
ScrFI	CCNGG	2 cut(s)	559, 755
SduI	GDGCHC	1 cut(s)	555
SexAI	ACCWGGT	1 cut(s)	557
SfaNI	GCATC	1 cut(s)	715
SmiMI	CAYNNNNRTG	2 cut(s)	191, 681
SphI	GCATGC	1 cut(s)	330
Sse9I	AATT	2 cut(s)	514, 624
SsiI	CCGC	2 cut(s)	207, 384
SspI	AATATT	2 cut(s)	378, 611
SspMI	CTAG	1 cut(s)	82
StyD4I	CCNGG	2 cut(s)	557, 753
StyI	CCWWGG	1 cut(s)	81
TaaI	ACNGT	2 cut(s)	286, 631
TaiI	ACGT	1 cut(s)	398
TasI	AATT	2 cut(s)	514, 624
Tru1I	TTAA	3 cut(s)	149, 245, 748
Tru9I	TTAA	3 cut(s)	149, 245, 748
TscAI	CASTG	1 cut(s)	395
TseFI	GTSAC	1 cut(s)	603
TseI	GCWGC	2 cut(s)	298, 737
Tsp45I	GTSAC	1 cut(s)	603
TspDTI	ATGAA	1 cut(s)	203
TspRI	CASTG	1 cut(s)	395
Tth111I	GACNNNGTC	1 cut(s)	541
Van91I	CCANNNNNTGG	1 cut(s)	564
XapI	RAATTY	1 cut(s)	514
XceI	RCATGY	3 cut(s)	330, 686, 747
XcmI	CCANNNNNNNNNTGG	1 cut(s)	663
XmaJI	CCTAGG	1 cut(s)	81
XmnI	GAANNNNTTC	1 cut(s)	166
XspI	CTAG	1 cut(s)	82
Zsp2I	ATGCAT	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.