Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0010656

Physical Location & Seq

Genomic Coordinates Reverse (-)

13559210 .. 13570095

Gene Structure 10886 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g10790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGACGAGAGTATTGTCGACGATCTTATACGAAGGCTTGTGGCTGCGAAGAATGGCCGGACCACCAAACAGGTGCAACTGACGGAAGCTGAAATACGGCAGCTTTGCTCTGCCTCCAAGGAAATCTTTCTTAGTCAGCCGAATCTTCTGGAGCTTGAAGCTCCAATTAAGATTTGTGGAGATGTTCACGGTCAGTTTTCAGATCTTTTGCGACTGTTTGAGTATGGTGGGTACCCACCGGAAGCCAATTATTTATTCCTAGGAGACTATGTTGATCGTGGTAAGCAGAGCATAGAGACAATATGCCTTCTCCTTGCATACAAGATCAAATACAAGGAGAACTTCTTTCTCCTCAGAGGCAACCATGAATGCGCTTCCATCAACCGCATCTATGGATTCTATGATGAGTGCAAGAGAAGATTTAATGTTCGTATTTGGAAGACATTTACTGACTGCTTCAACTGTCTTCCTGTTGCTGCTCTTATTGATGAGAAGATCCTTTGCATGCATGGCGGTCTGTCTCCTGATTTGAAACACTTAGATCAGATTAGGAATATTGCACGGCCGGTGGACGTGCCAGATCAGGGCCTTCTCTGTGATCTATTATGGGCTGATCCCGATAAAGATGTTGAAGGTTGGGGAGAGAATGATCGTGGCGTGTCATATACATTTGGGGCTGACAAGGTTGCCGAATTTCTCCAGAAACATGGCCTTGATCTCATTTGTCGTGCTCATCAGGTTGTGGAAGATGGATATGAGTTTTTTGGAAAAAGAAAGCTGGTAACCATATTTTCAGCACCAAATTACTGTGGGGAGTTCGATAATGCTGGTGCCATGATGAGTGTAGATGATACATTGACATGTTCCTTCCAGATTTTGAAAGCATCTGAGAAGAAGGGAAAACTTGGGATAAGCAACAACATGTTAAGACCAGGAACTCCTCCTCACAAGGGTAAGGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03015 ko04022 ko04024 ko04113 ko04114 ko04218 ko04261 ko04270 ko04390 ko04510 ko04611 ko04720 ko04728 ko04750 ko04810 ko04910 ko04921 ko04931 ko05031 ko05034 ko05168 ko05205 map03015 map04022 map04024 map04113 map04114 map04218 map04261 map04270 map04390 map04510 map04611 map04720 map04728 map04750 map04810 map04910 map04921 map04931 map05031 map05034 map05168 map05205

Pfam Domains

Protein Families

Metallophos STPPase_N

Protein Analysis

321

Amino Acids

36.15

Weight (kDa)

5.87

Isoelectric Point (pI)

35.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STPPase_N	PF16891	6 - 53	6.3e-21	Serine-threonine protein phosphatase N-terminal domain
Metallophos	PF00149	55 - 248	1.3e-51	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010656)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64040 AT4G11240
fragaria_vesca	FvH4_5g03260
malus_domestica	MD14G1112500.v1.1 MD14G1112800.v1.1 MD14G1112900.v1.1
prunus_persica	Prupe.5G107100_v2.0.a1
pyrus_communis	pycom14g10790
rosa_chinensis	RchiOBHm_Chr7g0196511
rosa_laevigata	RLG00000004008
rosa_multiflora	Rmu_sc0013350.1_g000011 Rmu_sc0019310.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259240
rosa_rugosa	Rorug07G0034200 Rorug07G0034300
rosa_samantha	Rh7AG158400 Rh7BG160400 Rh7CG166800 Rh7DG159600
rosa_wichuraiana	Rw7G013840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	231
AccB1I	GGYRCC	2 cut(s)	231, 830
AccI	GTMKAC	1 cut(s)	18
AciI	CCGC	2 cut(s)	385, 513
AclWI	GGATC	2 cut(s)	490, 608
AcoI	YGGCCR	2 cut(s)	55, 563
AcsI	RAATTY	1 cut(s)	692
AfaI	GTAC	1 cut(s)	233
AfiI	CCNNNNNNNGG	2 cut(s)	584, 950
AflIII	ACRYGT	2 cut(s)	860, 921
AgsI	TTSAA	5 cut(s)	158, 460, 532, 632, 880
AjiI	CACGTC	1 cut(s)	574
AjnI	CCWGG	1 cut(s)	931
AjuI	GAANNNNNNNTTGG	2 cut(s)	239, 271
AluBI	AGCT	5 cut(s)	89, 103, 154, 161, 778
AluI	AGCT	5 cut(s)	89, 103, 154, 161, 778
Alw21I	GWGCWC	1 cut(s)	733
Alw26I	GTCTC	3 cut(s)	258, 290, 525
AlwI	GGATC	2 cut(s)	490, 608
AoxI	GGCC	4 cut(s)	55, 563, 586, 709
ApeKI	GCWGC	3 cut(s)	44, 100, 476
ApoI	RAATTY	1 cut(s)	692
Asp700I	GAANNNNTTC	1 cut(s)	126
Asp718I	GGTACC	1 cut(s)	231
AspA2I	CCTAGG	1 cut(s)	259
AspLEI	GCGC	1 cut(s)	374
AspS9I	GGNCC	2 cut(s)	60, 586
AvaII	GGWCC	1 cut(s)	60
AvrII	CCTAGG	1 cut(s)	259
BanI	GGYRCC	2 cut(s)	231, 830
BarI	GAAGNNNNNNTAC	2 cut(s)	78, 110
BbsI	GAAGAC	2 cut(s)	446, 458
Bbv12I	GWGCWC	1 cut(s)	733
BbvI	GCAGC	3 cut(s)	31, 112, 463
BccI	CCATC	2 cut(s)	386, 743
BceAI	ACGGC	2 cut(s)	113, 578
BciT130I	CCWGG	1 cut(s)	933
BcoDI	GTCTC	3 cut(s)	258, 290, 525
BfaI	CTAG	1 cut(s)	260
BglII	AGATCT	1 cut(s)	202
BisI	GCNGC	3 cut(s)	45, 101, 477
BlnI	CCTAGG	1 cut(s)	259
BlsI	GCNGC	3 cut(s)	46, 102, 478
Bme1390I	CCNGG	1 cut(s)	933
Bme18I	GGWCC	1 cut(s)	60
BmgBI	CACGTC	1 cut(s)	574
BmgT120I	GGNCC	2 cut(s)	60, 586
BmiI	GGNNCC	2 cut(s)	233, 832
BmrFI	CCNGG	1 cut(s)	933
BmsI	GCATC	2 cut(s)	396, 893
BpiI	GAAGAC	2 cut(s)	446, 458
BpmI	CTGGAG	2 cut(s)	170, 683
BsaJI	CCNNGG	2 cut(s)	117, 259
BsaWI	WCCGGW	1 cut(s)	238
BsaXI	ACNNNNNCTCC	2 cut(s)	255, 285
Bsc4I	CCNNNNNNNGG	2 cut(s)	584, 950
Bse118I	RCCGGY	1 cut(s)	565
BseBI	CCWGG	1 cut(s)	933
BseDI	CCNNGG	2 cut(s)	117, 259
BseLI	CCNNNNNNNGG	2 cut(s)	584, 950
BseMII	CTCAG	2 cut(s)	367, 879
BseRI	GAGGAG	3 cut(s)	341, 930, 933
BseX3I	CGGCCG	1 cut(s)	563
BseXI	GCAGC	3 cut(s)	31, 112, 463
Bsh1285I	CGRYCG	1 cut(s)	566
BshFI	GGCC	4 cut(s)	57, 565, 588, 711
BshNI	GGYRCC	2 cut(s)	231, 830
BsiEI	CGRYCG	1 cut(s)	566
BsiHKAI	GWGCWC	1 cut(s)	733
BsiSI	CCGG	3 cut(s)	58, 239, 566
BslI	CCNNNNNNNGG	2 cut(s)	584, 950
BsmAI	GTCTC	3 cut(s)	258, 290, 525
BsmI	GAATGC	1 cut(s)	374
BsnI	GGCC	4 cut(s)	57, 565, 588, 711
Bsp1286I	GDGCHC	1 cut(s)	733
BspACI	CCGC	2 cut(s)	385, 513
BspANI	GGCC	4 cut(s)	57, 565, 588, 711
BspCNI	CTCAG	2 cut(s)	366, 880
BspLI	GGNNCC	2 cut(s)	233, 832
BspPI	GGATC	2 cut(s)	490, 608
BspT107I	GGYRCC	2 cut(s)	231, 830
BsrFI	RCCGGY	1 cut(s)	565
BssAI	RCCGGY	1 cut(s)	565
BssECI	CCNNGG	2 cut(s)	117, 259
BssT1I	CCWWGG	2 cut(s)	117, 259
Bst2UI	CCWGG	1 cut(s)	933
Bst4CI	ACNGT	4 cut(s)	191, 216, 464, 809
BstC8I	GCNNGC	1 cut(s)	506
BstDEI	CTNAG	4 cut(s)	131, 353, 538, 888
BstEII	GGTNACC	1 cut(s)	781
BstHHI	GCGC	1 cut(s)	374
BstMAI	GTCTC	3 cut(s)	258, 290, 525
BstMCI	CGRYCG	1 cut(s)	566
BstMWI	GCNNNNNNNGC	1 cut(s)	510
BstNI	CCWGG	1 cut(s)	933
BstNSI	RCATGY	3 cut(s)	508, 864, 925
BstPI	GGTNACC	1 cut(s)	781
BstSCI	CCNGG	1 cut(s)	931
BstV1I	GCAGC	3 cut(s)	31, 112, 463
BstV2I	GAAGAC	2 cut(s)	446, 458
BstX2I	RGATCY	2 cut(s)	202, 495
BstXI	CCANNNNNNTGG	1 cut(s)	707
BstYI	RGATCY	2 cut(s)	202, 495
BstZI	CGGCCG	1 cut(s)	563
BsuRI	GGCC	4 cut(s)	57, 565, 588, 711
BtrI	CACGTC	1 cut(s)	574
Cac8I	GCNNGC	1 cut(s)	506
CfoI	GCGC	1 cut(s)	374
Cfr10I	RCCGGY	1 cut(s)	565
Cfr13I	GGNCC	2 cut(s)	60, 586
Csp6I	GTAC	1 cut(s)	232
CviAII	CATG	7 cut(s)	365, 505, 509, 707, 835, 861, 922
CviQI	GTAC	1 cut(s)	232
DdeI	CTNAG	4 cut(s)	131, 353, 538, 888
EaeI	YGGCCR	2 cut(s)	55, 563
EagI	CGGCCG	1 cut(s)	563
EclXI	CGGCCG	1 cut(s)	563
Eco130I	CCWWGG	2 cut(s)	117, 259
Eco47I	GGWCC	1 cut(s)	60
Eco52I	CGGCCG	1 cut(s)	563
Eco91I	GGTNACC	1 cut(s)	781
EcoO109I	RGGNCCY	1 cut(s)	586
EcoO65I	GGTNACC	1 cut(s)	781
EcoRII	CCWGG	1 cut(s)	931
EcoT14I	CCWWGG	2 cut(s)	117, 259
EcoT22I	ATGCAT	1 cut(s)	510
ErhI	CCWWGG	2 cut(s)	117, 259
FaeI	CATG	7 cut(s)	368, 508, 512, 710, 838, 864, 925
FalI	AAGNNNNNCTT	4 cut(s)	110, 142, 326, 358
FatI	CATG	7 cut(s)	364, 504, 508, 706, 834, 860, 921
FblI	GTMKAC	1 cut(s)	18
Fnu4HI	GCNGC	3 cut(s)	45, 101, 477
Fsp4HI	GCNGC	3 cut(s)	45, 101, 477
FspBI	CTAG	1 cut(s)	260
GlaI	GCGC	1 cut(s)	373
GluI	GCNGC	3 cut(s)	45, 101, 477
GsuI	CTGGAG	2 cut(s)	170, 683
HaeIII	GGCC	4 cut(s)	57, 565, 588, 711
HapII	CCGG	3 cut(s)	58, 239, 566
HhaI	GCGC	1 cut(s)	374
Hin1II	CATG	7 cut(s)	368, 508, 512, 710, 838, 864, 925
Hin6I	GCGC	1 cut(s)	372
HinP1I	GCGC	1 cut(s)	372
HincII	GTYRAC	1 cut(s)	19
HindII	GTYRAC	1 cut(s)	19
HinfI	GANTC	2 cut(s)	142, 396
HpaII	CCGG	3 cut(s)	58, 239, 566
Hpy166II	GTNNAC	3 cut(s)	19, 187, 571
Hpy188I	TCNGA	4 cut(s)	202, 356, 546, 889
Hpy188III	TCNNGA	5 cut(s)	149, 524, 617, 700, 871
Hpy8I	GTNNAC	3 cut(s)	19, 187, 571
Hpy99I	CGWCG	1 cut(s)	23
HpyAV	CCTTC	6 cut(s)	27, 317, 599, 626, 877, 889
HpyCH4III	ACNGT	4 cut(s)	191, 216, 464, 809
HpyCH4IV	ACGT	1 cut(s)	573
HpyCH4V	TGCA	6 cut(s)	76, 317, 411, 504, 508, 560
HpyF10VI	GCNNNNNNNGC	1 cut(s)	510
HpyF3I	CTNAG	4 cut(s)	131, 353, 538, 888
HpySE526I	ACGT	1 cut(s)	573
Hsp92II	CATG	7 cut(s)	368, 508, 512, 710, 838, 864, 925
HspAI	GCGC	1 cut(s)	372
KpnI	GGTACC	1 cut(s)	235
LmnI	GCTCC	2 cut(s)	151, 166
Lsp1109I	GCAGC	3 cut(s)	31, 112, 463
LweI	GCATC	2 cut(s)	396, 893
MaeI	CTAG	1 cut(s)	260
MaeII	ACGT	1 cut(s)	573
MaeIII	GTNAC	1 cut(s)	781
MboII	GAAGA	8 cut(s)	61, 137, 429, 451, 458, 505, 758, 904
MflI	RGATCY	2 cut(s)	202, 495
MhlI	GDGCHC	1 cut(s)	733
MluCI	AATT	4 cut(s)	165, 247, 692, 802
MnlI	CCTC	5 cut(s)	124, 350, 362, 951, 954
Mph1103I	ATGCAT	1 cut(s)	510
MroXI	GAANNNNTTC	1 cut(s)	126
MseI	TTAA	3 cut(s)	168, 423, 926
MslI	CAYNNNNRTG	1 cut(s)	859
MspI	CCGG	3 cut(s)	58, 239, 566
MspR9I	CCNGG	1 cut(s)	933
Mva1269I	GAATGC	1 cut(s)	374
MvaI	CCWGG	1 cut(s)	933
MwoI	GCNNNNNNNGC	1 cut(s)	510
NlaIII	CATG	7 cut(s)	368, 508, 512, 710, 838, 864, 925
NlaIV	GGNNCC	2 cut(s)	233, 832
NsiI	ATGCAT	1 cut(s)	510
NspI	RCATGY	3 cut(s)	508, 864, 925
PaeI	GCATGC	1 cut(s)	508
PciI	ACATGT	2 cut(s)	860, 921
PctI	GAATGC	1 cut(s)	374
PdmI	GAANNNNTTC	1 cut(s)	126
PfeI	GAWTC	2 cut(s)	142, 396
PkrI	GCNGC	3 cut(s)	46, 102, 478
PscI	ACATGT	2 cut(s)	860, 921
Psp6I	CCWGG	1 cut(s)	931
PspEI	GGTNACC	1 cut(s)	781
PspGI	CCWGG	1 cut(s)	931
PspN4I	GGNNCC	2 cut(s)	233, 832
PspPI	GGNCC	2 cut(s)	60, 586
PsuI	RGATCY	2 cut(s)	202, 495
RsaI	GTAC	1 cut(s)	233
RsaNI	GTAC	1 cut(s)	232
RseI	CAYNNNNRTG	1 cut(s)	859
SalI	GTCGAC	1 cut(s)	17
SaqAI	TTAA	3 cut(s)	168, 423, 926
SatI	GCNGC	3 cut(s)	45, 101, 477
Sau96I	GGNCC	2 cut(s)	60, 586
ScrFI	CCNGG	1 cut(s)	933
SduI	GDGCHC	1 cut(s)	733
SfaNI	GCATC	2 cut(s)	396, 893
SinI	GGWCC	1 cut(s)	60
SmiMI	CAYNNNNRTG	1 cut(s)	859
SphI	GCATGC	1 cut(s)	508
Sse9I	AATT	4 cut(s)	165, 247, 692, 802
SsiI	CCGC	2 cut(s)	385, 513
SspI	AATATT	1 cut(s)	556
SspMI	CTAG	1 cut(s)	260
StyD4I	CCNGG	1 cut(s)	931
StyI	CCWWGG	2 cut(s)	117, 259
TaaI	ACNGT	4 cut(s)	191, 216, 464, 809
TaiI	ACGT	1 cut(s)	576
TaqI	TCGA	2 cut(s)	18, 819
TasI	AATT	4 cut(s)	165, 247, 692, 802
TfiI	GAWTC	2 cut(s)	142, 396
Tru1I	TTAA	3 cut(s)	168, 423, 926
Tru9I	TTAA	3 cut(s)	168, 423, 926
TseI	GCWGC	3 cut(s)	44, 100, 476
TspDTI	ATGAA	1 cut(s)	381
TspGWI	ACGGA	1 cut(s)	98
VpaK11BI	GGWCC	1 cut(s)	60
XapI	RAATTY	1 cut(s)	692
XceI	RCATGY	3 cut(s)	508, 864, 925
XmaJI	CCTAGG	1 cut(s)	259
XmiI	GTMKAC	1 cut(s)	18
XmnI	GAANNNNTTC	1 cut(s)	126
XspI	CTAG	1 cut(s)	260
Zsp2I	ATGCAT	1 cut(s)	510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.