Rh7CG166800

Serine threonine-protein phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0010656
Physical Location & Seq
Forward (+)
13881774 .. 13885655
3882 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG166800.1

Sequence Viewer

Length: 756 bp
ATGGAAGACACAGTTGTGGACGATCTTATACGGAGGCTTGTGTCGGCGAAGAGCGGCCGGACGACGAAGCAGGTCCAGCTGACGGAGGCGGAGATACGGCATCTTTGCACCACCTCCAAGGAGATCTTTCTCAGTCAGCCAAATCTTCTCGAACTCGAAGCTCCCATAAAGATTTGCGGAGATGTTCATGGTCAGTTTTCTGATCTCTTACGTTTGTTTGAGTATGGTGGGTACCCACCTGAAGCCAACTATTTATTCCTAGGGGACTATGTTGATCGTGGGAAGCAAAGCATAGAGACAATATGCCTTCTCCTTGCATATAAGATTAAATACAAGGAGAACTTCTTCCTCCTCAGAGGCAACCATGAATGTGCTTCCATCAACCGCATATATGGGTTCTATGATGAGTGCAAGAGAAGATTTAATGTTCGTATTTGGAAGGTATTTACTGACTGCTTCAACTGTCTGCCTGTTGCTGCTCTTGTTGATGAGAAGATCCTTTGCATGCATGGTGGTCTATCTCCTGATTTGAAAAACTTAGATCAGATTAGGAATATTGCCCGCCCAGTGGACGTACCAGATCAGGGCCTTCTCTGTGATCTATTATGGGCTGATCCTGATAAAGATGTTGAAGGTTGGGGAGAGAATGATCGTGGTGTGTCATATACATTTGGGGCTGACAAGGTTGCTGAATTTCTCCAAAAACATGACCTTGACCTTGTCTGCCGTGCTCACCAGGTAAATTTTCTTTTTTAG

Protein Analysis

251

Amino Acids

28.79

Weight (kDa)

5.31

Isoelectric Point (pI)

39.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
STPPase_N PF16891 6 - 53 1.6e-20 Serine-threonine protein phosphatase N-terminal domain
Metallophos PF00149 55 - 247 4.2e-51 Calcineurin-like phosphoesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010656)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64040 AT4G11240
fragaria_vesca FvH4_5g03260
malus_domestica MD14G1112500.v1.1 MD14G1112800.v1.1 MD14G1112900.v1.1
prunus_persica Prupe.5G107100_v2.0.a1
pyrus_communis pycom14g10790
rosa_chinensis RchiOBHm_Chr7g0196511
rosa_laevigata RLG00000004008
rosa_multiflora Rmu_sc0013350.1_g000011 Rmu_sc0019310.1_g000001
rosa_roxburghii Rroxscaffold_3G00259240
rosa_rugosa Rorug07G0034200 Rorug07G0034300
rosa_samantha Rh7AG158400 Rh7BG160400 Rh7CG166800 Rh7DG159600
rosa_wichuraiana Rw7G013840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 61
Acc65I GGTACC 1 cut(s) 231
AccB1I GGYRCC 1 cut(s) 231
AccBSI CCGCTC 1 cut(s) 54
AciI CCGC 5 cut(s) 54, 89, 177, 385, 562
AclWI GGATC 2 cut(s) 490, 608
AcoI YGGCCR 1 cut(s) 55
AcsI RAATTY 2 cut(s) 692, 742
AcuI CTGAAG 1 cut(s) 261
AfaI GTAC 2 cut(s) 233, 576
AfiI CCNNNNNNNGG 3 cut(s) 82, 568, 584
AgsI TTSAA 3 cut(s) 460, 532, 632
AjnI CCWGG 1 cut(s) 735
AjuI GAANNNNNNNTTGG 2 cut(s) 239, 271
AleI CACNNNNGTG 1 cut(s) 14
AluBI AGCT 2 cut(s) 79, 161
AluI AGCT 2 cut(s) 79, 161
Alw21I GWGCWC 1 cut(s) 733
Alw26I GTCTC 1 cut(s) 290
AlwI GGATC 2 cut(s) 490, 608
AoxI GGCC 2 cut(s) 55, 586
ApeKI GCWGC 1 cut(s) 476
ApoI RAATTY 2 cut(s) 692, 742
Asp700I GAANNNNTTC 1 cut(s) 344
Asp718I GGTACC 1 cut(s) 231
AspA2I CCTAGG 1 cut(s) 259
AspS9I GGNCC 2 cut(s) 73, 586
AsuHPI GGTGA 1 cut(s) 725
AvaII GGWCC 1 cut(s) 73
AvrII CCTAGG 1 cut(s) 259
BanI GGYRCC 1 cut(s) 231
BbsI GAAGAC 1 cut(s) 12
Bbv12I GWGCWC 1 cut(s) 733
BbvI GCAGC 1 cut(s) 463
BccI CCATC 1 cut(s) 386
BceAI ACGGC 2 cut(s) 113, 711
BciT130I CCWGG 1 cut(s) 737
BcoDI GTCTC 1 cut(s) 290
BfaI CTAG 1 cut(s) 260
BfuAI ACCTGC 1 cut(s) 61
BglII AGATCT 1 cut(s) 123
BisI GCNGC 2 cut(s) 55, 477
BlnI CCTAGG 1 cut(s) 259
BlsI GCNGC 2 cut(s) 56, 478
Bme1390I CCNGG 1 cut(s) 737
Bme18I GGWCC 1 cut(s) 73
BmgT120I GGNCC 2 cut(s) 73, 586
BmiI GGNNCC 1 cut(s) 233
BmrFI CCNGG 1 cut(s) 737
BmrI ACTGGG 1 cut(s) 560
BmsI GCATC 1 cut(s) 109
BmuI ACTGGG 1 cut(s) 560
BpiI GAAGAC 1 cut(s) 12
BsaJI CCNNGG 2 cut(s) 117, 259
Bsc4I CCNNNNNNNGG 3 cut(s) 82, 568, 584
Bse1I ACTGG 1 cut(s) 566
BseBI CCWGG 1 cut(s) 737
BseDI CCNNGG 2 cut(s) 117, 259
BseLI CCNNNNNNNGG 3 cut(s) 82, 568, 584
BseMII CTCAG 2 cut(s) 145, 367
BseNI ACTGG 1 cut(s) 566
BseRI GAGGAG 1 cut(s) 341
BseX3I CGGCCG 1 cut(s) 55
BseXI GCAGC 1 cut(s) 463
Bsh1285I CGRYCG 1 cut(s) 58
BshFI GGCC 2 cut(s) 57, 588
BshNI GGYRCC 1 cut(s) 231
BsiEI CGRYCG 1 cut(s) 58
BsiHKAI GWGCWC 1 cut(s) 733
BsiSI CCGG 1 cut(s) 58
BslFI GGGAC 1 cut(s) 278
BslI CCNNNNNNNGG 3 cut(s) 82, 568, 584
BsmAI GTCTC 1 cut(s) 290
BsmFI GGGAC 1 cut(s) 278
BsnI GGCC 2 cut(s) 57, 588
Bsp1286I GDGCHC 1 cut(s) 733
BspACI CCGC 5 cut(s) 54, 89, 177, 385, 562
BspANI GGCC 2 cut(s) 57, 588
BspCNI CTCAG 2 cut(s) 144, 366
BspLI GGNNCC 1 cut(s) 233
BspMI ACCTGC 1 cut(s) 61
BspPI GGATC 2 cut(s) 490, 608
BspQI GCTCTTC 1 cut(s) 44
BspT107I GGYRCC 1 cut(s) 231
BsrBI CCGCTC 1 cut(s) 54
BsrI ACTGG 1 cut(s) 566
BssECI CCNNGG 2 cut(s) 117, 259
BssT1I CCWWGG 2 cut(s) 117, 259
Bst2UI CCWGG 1 cut(s) 737
Bst4CI ACNGT 2 cut(s) 13, 464
Bst6I CTCTTC 1 cut(s) 44
BstC8I GCNNGC 2 cut(s) 506, 562
BstDEI CTNAG 3 cut(s) 131, 353, 538
BstMAI GTCTC 1 cut(s) 290
BstMCI CGRYCG 1 cut(s) 58
BstMWI GCNNNNNNNGC 1 cut(s) 76
BstNI CCWGG 1 cut(s) 737
BstNSI RCATGY 1 cut(s) 508
BstSCI CCNGG 1 cut(s) 735
BstV1I GCAGC 1 cut(s) 463
BstV2I GAAGAC 1 cut(s) 12
BstX2I RGATCY 2 cut(s) 123, 495
BstYI RGATCY 2 cut(s) 123, 495
BstZI CGGCCG 1 cut(s) 55
BsuRI GGCC 2 cut(s) 57, 588
BtsIMutI CAGTG 1 cut(s) 573
BveI ACCTGC 1 cut(s) 61
Cac8I GCNNGC 2 cut(s) 506, 562
Cfr13I GGNCC 2 cut(s) 73, 586
CsiI ACCWGGT 1 cut(s) 735
Csp6I GTAC 2 cut(s) 232, 575
CviAII CATG 5 cut(s) 188, 365, 505, 509, 707
CviJI RGCY 9 cut(s) 37, 57, 79, 139, 161, 245, 588, 611, 677
CviKI_1 RGCY 9 cut(s) 37, 57, 79, 139, 161, 245, 588, 611, 677
CviQI GTAC 2 cut(s) 232, 575
DdeI CTNAG 3 cut(s) 131, 353, 538
EaeI YGGCCR 1 cut(s) 55
EagI CGGCCG 1 cut(s) 55
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
EciI GGCGGA 1 cut(s) 104
EclXI CGGCCG 1 cut(s) 55
Eco130I CCWWGG 2 cut(s) 117, 259
Eco47I GGWCC 1 cut(s) 73
Eco52I CGGCCG 1 cut(s) 55
Eco57I CTGAAG 1 cut(s) 261
EcoO109I RGGNCCY 1 cut(s) 586
EcoRII CCWGG 1 cut(s) 735
EcoT14I CCWWGG 2 cut(s) 117, 259
EcoT22I ATGCAT 1 cut(s) 510
ErhI CCWWGG 2 cut(s) 117, 259
FaeI CATG 5 cut(s) 191, 368, 508, 512, 710
FalI AAGNNNNNCTT 4 cut(s) 110, 142, 326, 358
FaqI GGGAC 1 cut(s) 278
FatI CATG 5 cut(s) 187, 364, 504, 508, 706
FauI CCCGC 1 cut(s) 569
Fnu4HI GCNGC 2 cut(s) 55, 477
Fsp4HI GCNGC 2 cut(s) 55, 477
FspBI CTAG 1 cut(s) 260
GluI GCNGC 2 cut(s) 55, 477
HaeIII GGCC 2 cut(s) 57, 588
HapII CCGG 1 cut(s) 58
Hin1II CATG 5 cut(s) 191, 368, 508, 512, 710
HpaII CCGG 1 cut(s) 58
HphI GGTGA 1 cut(s) 725
Hpy166II GTNNAC 2 cut(s) 19, 571
Hpy188I TCNGA 3 cut(s) 202, 356, 546
Hpy188III TCNNGA 3 cut(s) 149, 524, 617
Hpy8I GTNNAC 2 cut(s) 19, 571
Hpy99I CGWCG 1 cut(s) 67
HpyAV CCTTC 4 cut(s) 317, 433, 599, 626
HpyCH4III ACNGT 2 cut(s) 13, 464
HpyCH4IV ACGT 2 cut(s) 211, 573
HpyCH4V TGCA 5 cut(s) 108, 317, 411, 504, 508
HpyF10VI GCNNNNNNNGC 1 cut(s) 76
HpyF3I CTNAG 3 cut(s) 131, 353, 538
HpySE526I ACGT 2 cut(s) 211, 573
Hsp92II CATG 5 cut(s) 191, 368, 508, 512, 710
KpnI GGTACC 1 cut(s) 235
LguI GCTCTTC 1 cut(s) 44
LmnI GCTCC 1 cut(s) 166
Lsp1109I GCAGC 1 cut(s) 463
LweI GCATC 1 cut(s) 109
MabI ACCWGGT 1 cut(s) 735
MaeI CTAG 1 cut(s) 260
MaeII ACGT 2 cut(s) 211, 573
MbiI CCGCTC 1 cut(s) 54
MboII GAAGA 6 cut(s) 17, 61, 137, 337, 429, 505
MflI RGATCY 2 cut(s) 123, 495
MhlI GDGCHC 1 cut(s) 733
MluCI AATT 2 cut(s) 692, 742
MnlI CCTC 6 cut(s) 27, 79, 124, 350, 359, 362
Mph1103I ATGCAT 1 cut(s) 510
MroXI GAANNNNTTC 1 cut(s) 344
MseI TTAA 2 cut(s) 327, 423
MslI CAYNNNNRTG 2 cut(s) 14, 369
MspA1I CMGCKG 1 cut(s) 79
MspI CCGG 1 cut(s) 58
MspR9I CCNGG 1 cut(s) 737
MvaI CCWGG 1 cut(s) 737
MwoI GCNNNNNNNGC 1 cut(s) 76
NlaIII CATG 5 cut(s) 191, 368, 508, 512, 710
NlaIV GGNNCC 1 cut(s) 233
NsiI ATGCAT 1 cut(s) 510
NspI RCATGY 1 cut(s) 508
OliI CACNNNNGTG 1 cut(s) 14
PaeI GCATGC 1 cut(s) 508
PciSI GCTCTTC 1 cut(s) 44
PdmI GAANNNNTTC 1 cut(s) 344
PflFI GACNNNGTC 1 cut(s) 719
PkrI GCNGC 2 cut(s) 56, 478
Psp6I CCWGG 1 cut(s) 735
PspGI CCWGG 1 cut(s) 735
PspN4I GGNNCC 1 cut(s) 233
PspPI GGNCC 2 cut(s) 73, 586
PsuI RGATCY 2 cut(s) 123, 495
PsyI GACNNNGTC 1 cut(s) 719
PvuII CAGCTG 1 cut(s) 79
RsaI GTAC 2 cut(s) 233, 576
RsaNI GTAC 2 cut(s) 232, 575
RseI CAYNNNNRTG 2 cut(s) 14, 369
SapI GCTCTTC 1 cut(s) 44
SaqAI TTAA 2 cut(s) 327, 423
SatI GCNGC 2 cut(s) 55, 477
Sau96I GGNCC 2 cut(s) 73, 586
ScrFI CCNGG 1 cut(s) 737
SduI GDGCHC 1 cut(s) 733
SexAI ACCWGGT 1 cut(s) 735
SfaNI GCATC 1 cut(s) 109
SinI GGWCC 1 cut(s) 73
SmiMI CAYNNNNRTG 2 cut(s) 14, 369
SphI GCATGC 1 cut(s) 508
Sse9I AATT 2 cut(s) 692, 742
SsiI CCGC 5 cut(s) 54, 89, 177, 385, 562
SspI AATATT 1 cut(s) 556
SspMI CTAG 1 cut(s) 260
StyD4I CCNGG 1 cut(s) 735
StyI CCWWGG 2 cut(s) 117, 259
TaaI ACNGT 2 cut(s) 13, 464
TaiI ACGT 2 cut(s) 214, 576
TaqI TCGA 2 cut(s) 150, 156
TasI AATT 2 cut(s) 692, 742
TauI GCSGC 1 cut(s) 57
Tru1I TTAA 2 cut(s) 327, 423
Tru9I TTAA 2 cut(s) 327, 423
TscAI CASTG 1 cut(s) 573
TseI GCWGC 1 cut(s) 476
TspDTI ATGAA 2 cut(s) 176, 381
TspGWI ACGGA 2 cut(s) 46, 98
TspRI CASTG 1 cut(s) 573
Tth111I GACNNNGTC 1 cut(s) 719
VpaK11BI GGWCC 1 cut(s) 73
XapI RAATTY 2 cut(s) 692, 742
XceI RCATGY 1 cut(s) 508
XmaJI CCTAGG 1 cut(s) 259
XmnI GAANNNNTTC 1 cut(s) 344
XspI CTAG 1 cut(s) 260
Zsp2I ATGCAT 1 cut(s) 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.