Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013350.1

Orthogroup ID

OG0010656

Physical Location & Seq

Genomic Coordinates Reverse (-)

49699 .. 52207

Gene Structure 2509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013350.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

atggaagacacagttgtggacgatcttatacggaggcttgtgtcggcgaagagcggccggacgacgaagcaggtccagctgacggaggcggagatacggcatctttgcaccacctccaaggagatctttctcagtcagcccaatcttctcgaactcgaagctcccataaagatttgcggagatgttcatggtcagttttctgatctcttgcgtttgtttgagtatggtgggtacccacctgaagccaactatttattcctaggggactatgttgatcgtgggaagcaaagcatagagacaatatgccttctccttgcatataagattaaatacaaggagaacttcttcctcctcagaggcaaccatgaatgtgcttccatcaaccgcatatatgggttctatgatgagtgcaagagaagatttaatgttcgtatttggaaggtatttactgactgcttcaactgtctgcctgtcgctgctcttgttgatgagaagatcctttgcatgcatggtggtctatctcctgatttgaaaaacttagatcagattaggaatattgcccgcccagtggacgtaccagatcagggccttctctgtgatctattatgggctgatcctgataaagatgttgaaggttggggagagaatgatcgtggtgtgtcatatacatttggggctgacaaggttgctgaatttctccaaaaacatgaccttgaccttgtctgccgtgctcaccaggtcgtggaagatggatatgagttttttggaaagaggaagctggtgacaatattttcagcaccaaattactgtggtgagtttgataatgctggtgccatcatgcctttcaataccggggcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03015 ko04022 ko04024 ko04113 ko04114 ko04218 ko04261 ko04270 ko04390 ko04510 ko04611 ko04720 ko04728 ko04750 ko04810 ko04910 ko04921 ko04931 ko05031 ko05034 ko05168 ko05205 map03015 map04022 map04024 map04113 map04114 map04218 map04261 map04270 map04390 map04510 map04611 map04720 map04728 map04750 map04810 map04910 map04921 map04931 map05031 map05034 map05168 map05205

Pfam Domains

Protein Families

Metallophos STPPase_N

Protein Analysis

286

Amino Acids

32.53

Weight (kDa)

5.16

Isoelectric Point (pI)

39.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010656)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64040 AT4G11240
fragaria_vesca	FvH4_5g03260
malus_domestica	MD14G1112500.v1.1 MD14G1112800.v1.1 MD14G1112900.v1.1
prunus_persica	Prupe.5G107100_v2.0.a1
pyrus_communis	pycom14g10790
rosa_chinensis	RchiOBHm_Chr7g0196511
rosa_laevigata	RLG00000004008
rosa_multiflora	Rmu_sc0013350.1_g000011 Rmu_sc0019310.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259240
rosa_rugosa	Rorug07G0034200 Rorug07G0034300
rosa_samantha	Rh7AG158400 Rh7BG160400 Rh7CG166800 Rh7DG159600
rosa_wichuraiana	Rw7G013840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	61
Acc65I	GGTACC	1 cut(s)	231
AccB1I	GGYRCC	2 cut(s)	231, 830
AccB7I	CCANNNNNTGG	1 cut(s)	742
AccBSI	CCGCTC	1 cut(s)	54
AciI	CCGC	5 cut(s)	54, 89, 177, 385, 562
AclWI	GGATC	2 cut(s)	490, 608
AcoI	YGGCCR	1 cut(s)	55
AcsI	RAATTY	1 cut(s)	692
AcuI	CTGAAG	1 cut(s)	261
AfaI	GTAC	2 cut(s)	233, 576
AfiI	CCNNNNNNNGG	4 cut(s)	82, 568, 584, 742
AgsI	TTSAA	4 cut(s)	460, 532, 632, 847
AjnI	CCWGG	1 cut(s)	735
AjuI	GAANNNNNNNTTGG	2 cut(s)	239, 271
AleI	CACNNNNGTG	1 cut(s)	14
AluBI	AGCT	3 cut(s)	79, 161, 778
AluI	AGCT	3 cut(s)	79, 161, 778
Alw21I	GWGCWC	1 cut(s)	733
Alw26I	GTCTC	1 cut(s)	290
AlwI	GGATC	2 cut(s)	490, 608
AoxI	GGCC	3 cut(s)	55, 586, 855
ApeKI	GCWGC	1 cut(s)	476
ApoI	RAATTY	1 cut(s)	692
Asp700I	GAANNNNTTC	1 cut(s)	344
Asp718I	GGTACC	1 cut(s)	231
AspA2I	CCTAGG	1 cut(s)	259
AspS9I	GGNCC	3 cut(s)	73, 586, 855
AsuC2I	CCSGG	1 cut(s)	853
AsuHPI	GGTGA	3 cut(s)	725, 793, 824
AvaII	GGWCC	1 cut(s)	73
AvrII	CCTAGG	1 cut(s)	259
BanI	GGYRCC	2 cut(s)	231, 830
BbsI	GAAGAC	1 cut(s)	12
Bbv12I	GWGCWC	1 cut(s)	733
BbvI	GCAGC	1 cut(s)	463
BccI	CCATC	3 cut(s)	386, 743, 842
BceAI	ACGGC	2 cut(s)	113, 711
BciT130I	CCWGG	1 cut(s)	737
BcnI	CCSGG	1 cut(s)	853
BcoDI	GTCTC	1 cut(s)	290
BfaI	CTAG	1 cut(s)	260
BfuAI	ACCTGC	1 cut(s)	61
BglII	AGATCT	1 cut(s)	123
BisI	GCNGC	2 cut(s)	55, 477
BlnI	CCTAGG	1 cut(s)	259
BlsI	GCNGC	2 cut(s)	56, 478
Bme1390I	CCNGG	2 cut(s)	737, 853
Bme18I	GGWCC	1 cut(s)	73
BmgT120I	GGNCC	3 cut(s)	73, 586, 855
BmiI	GGNNCC	3 cut(s)	233, 832, 856
BmrFI	CCNGG	2 cut(s)	737, 853
BmrI	ACTGGG	1 cut(s)	560
BmsI	GCATC	1 cut(s)	109
BmuI	ACTGGG	1 cut(s)	560
BpiI	GAAGAC	1 cut(s)	12
BpuMI	CCSGG	1 cut(s)	853
BsaJI	CCNNGG	3 cut(s)	117, 259, 852
Bsc4I	CCNNNNNNNGG	4 cut(s)	82, 568, 584, 742
Bse1I	ACTGG	1 cut(s)	566
BseBI	CCWGG	1 cut(s)	737
BseDI	CCNNGG	3 cut(s)	117, 259, 852
BseLI	CCNNNNNNNGG	4 cut(s)	82, 568, 584, 742
BseMII	CTCAG	2 cut(s)	145, 367
BseNI	ACTGG	1 cut(s)	566
BseRI	GAGGAG	1 cut(s)	341
BseX3I	CGGCCG	1 cut(s)	55
BseXI	GCAGC	1 cut(s)	463
Bsh1285I	CGRYCG	1 cut(s)	58
BshFI	GGCC	3 cut(s)	57, 588, 857
BshNI	GGYRCC	2 cut(s)	231, 830
BsiEI	CGRYCG	1 cut(s)	58
BsiHKAI	GWGCWC	1 cut(s)	733
BsiSI	CCGG	2 cut(s)	58, 852
BslFI	GGGAC	1 cut(s)	278
BslI	CCNNNNNNNGG	4 cut(s)	82, 568, 584, 742
BsmAI	GTCTC	1 cut(s)	290
BsmFI	GGGAC	1 cut(s)	278
BsnI	GGCC	3 cut(s)	57, 588, 857
Bsp1286I	GDGCHC	1 cut(s)	733
BspACI	CCGC	5 cut(s)	54, 89, 177, 385, 562
BspANI	GGCC	3 cut(s)	57, 588, 857
BspCNI	CTCAG	2 cut(s)	144, 366
BspLI	GGNNCC	3 cut(s)	233, 832, 856
BspMI	ACCTGC	1 cut(s)	61
BspPI	GGATC	2 cut(s)	490, 608
BspQI	GCTCTTC	1 cut(s)	44
BspT107I	GGYRCC	2 cut(s)	231, 830
BsrBI	CCGCTC	1 cut(s)	54
BsrI	ACTGG	1 cut(s)	566
BssECI	CCNNGG	3 cut(s)	117, 259, 852
BssT1I	CCWWGG	2 cut(s)	117, 259
Bst2UI	CCWGG	1 cut(s)	737
Bst4CI	ACNGT	3 cut(s)	13, 464, 809
Bst6I	CTCTTC	1 cut(s)	44
BstC8I	GCNNGC	2 cut(s)	506, 562
BstDEI	CTNAG	3 cut(s)	131, 353, 538
BstMAI	GTCTC	1 cut(s)	290
BstMCI	CGRYCG	1 cut(s)	58
BstMWI	GCNNNNNNNGC	1 cut(s)	76
BstNI	CCWGG	1 cut(s)	737
BstNSI	RCATGY	1 cut(s)	508
BstSCI	CCNGG	2 cut(s)	735, 851
BstV1I	GCAGC	1 cut(s)	463
BstV2I	GAAGAC	1 cut(s)	12
BstX2I	RGATCY	2 cut(s)	123, 495
BstYI	RGATCY	2 cut(s)	123, 495
BstZI	CGGCCG	1 cut(s)	55
BsuRI	GGCC	3 cut(s)	57, 588, 857
BtsIMutI	CAGTG	1 cut(s)	573
BveI	ACCTGC	1 cut(s)	61
Cac8I	GCNNGC	2 cut(s)	506, 562
Cfr13I	GGNCC	3 cut(s)	73, 586, 855
CsiI	ACCWGGT	1 cut(s)	735
Csp6I	GTAC	2 cut(s)	232, 575
CviAII	CATG	6 cut(s)	188, 365, 505, 509, 707, 838
CviQI	GTAC	2 cut(s)	232, 575
DdeI	CTNAG	3 cut(s)	131, 353, 538
EaeI	YGGCCR	1 cut(s)	55
EagI	CGGCCG	1 cut(s)	55
Eam1104I	CTCTTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	44
EciI	GGCGGA	1 cut(s)	104
EclXI	CGGCCG	1 cut(s)	55
Eco130I	CCWWGG	2 cut(s)	117, 259
Eco47I	GGWCC	1 cut(s)	73
Eco52I	CGGCCG	1 cut(s)	55
Eco57I	CTGAAG	1 cut(s)	261
EcoO109I	RGGNCCY	2 cut(s)	586, 855
EcoRII	CCWGG	1 cut(s)	735
EcoT14I	CCWWGG	2 cut(s)	117, 259
EcoT22I	ATGCAT	1 cut(s)	510
ErhI	CCWWGG	2 cut(s)	117, 259
FaeI	CATG	6 cut(s)	191, 368, 508, 512, 710, 841
FalI	AAGNNNNNCTT	4 cut(s)	110, 142, 326, 358
FaqI	GGGAC	1 cut(s)	278
FatI	CATG	6 cut(s)	187, 364, 504, 508, 706, 837
FauI	CCCGC	1 cut(s)	569
Fnu4HI	GCNGC	2 cut(s)	55, 477
Fsp4HI	GCNGC	2 cut(s)	55, 477
FspBI	CTAG	1 cut(s)	260
GluI	GCNGC	2 cut(s)	55, 477
HaeIII	GGCC	3 cut(s)	57, 588, 857
HapII	CCGG	2 cut(s)	58, 852
Hin1II	CATG	6 cut(s)	191, 368, 508, 512, 710, 841
HpaII	CCGG	2 cut(s)	58, 852
HphI	GGTGA	3 cut(s)	725, 793, 824
Hpy166II	GTNNAC	2 cut(s)	19, 571
Hpy188I	TCNGA	3 cut(s)	202, 356, 546
Hpy188III	TCNNGA	3 cut(s)	149, 524, 617
Hpy8I	GTNNAC	2 cut(s)	19, 571
Hpy99I	CGWCG	1 cut(s)	67
HpyAV	CCTTC	4 cut(s)	317, 433, 599, 626
HpyCH4III	ACNGT	3 cut(s)	13, 464, 809
HpyCH4IV	ACGT	1 cut(s)	573
HpyCH4V	TGCA	5 cut(s)	108, 317, 411, 504, 508
HpyF10VI	GCNNNNNNNGC	1 cut(s)	76
HpyF3I	CTNAG	3 cut(s)	131, 353, 538
HpySE526I	ACGT	1 cut(s)	573
Hsp92II	CATG	6 cut(s)	191, 368, 508, 512, 710, 841
KpnI	GGTACC	1 cut(s)	235
LguI	GCTCTTC	1 cut(s)	44
LmnI	GCTCC	1 cut(s)	166
Lsp1109I	GCAGC	1 cut(s)	463
LweI	GCATC	1 cut(s)	109
MabI	ACCWGGT	1 cut(s)	735
MaeI	CTAG	1 cut(s)	260
MaeII	ACGT	1 cut(s)	573
MaeIII	GTNAC	1 cut(s)	781
MbiI	CCGCTC	1 cut(s)	54
MboII	GAAGA	7 cut(s)	17, 61, 137, 337, 429, 505, 758
MflI	RGATCY	2 cut(s)	123, 495
MhlI	GDGCHC	1 cut(s)	733
MluCI	AATT	2 cut(s)	692, 802
MnlI	CCTC	7 cut(s)	27, 79, 124, 350, 359, 362, 765
Mph1103I	ATGCAT	1 cut(s)	510
MroXI	GAANNNNTTC	1 cut(s)	344
MseI	TTAA	2 cut(s)	327, 423
MslI	CAYNNNNRTG	2 cut(s)	14, 369
MspA1I	CMGCKG	1 cut(s)	79
MspI	CCGG	2 cut(s)	58, 852
MspR9I	CCNGG	2 cut(s)	737, 853
MvaI	CCWGG	1 cut(s)	737
MwoI	GCNNNNNNNGC	1 cut(s)	76
NciI	CCSGG	1 cut(s)	853
NlaIII	CATG	6 cut(s)	191, 368, 508, 512, 710, 841
NlaIV	GGNNCC	3 cut(s)	233, 832, 856
NmuCI	GTSAC	1 cut(s)	781
NsiI	ATGCAT	1 cut(s)	510
NspI	RCATGY	1 cut(s)	508
OliI	CACNNNNGTG	1 cut(s)	14
PaeI	GCATGC	1 cut(s)	508
PciSI	GCTCTTC	1 cut(s)	44
PdmI	GAANNNNTTC	1 cut(s)	344
PflFI	GACNNNGTC	1 cut(s)	719
PflMI	CCANNNNNTGG	1 cut(s)	742
PkrI	GCNGC	2 cut(s)	56, 478
Psp6I	CCWGG	1 cut(s)	735
PspGI	CCWGG	1 cut(s)	735
PspN4I	GGNNCC	3 cut(s)	233, 832, 856
PspPI	GGNCC	3 cut(s)	73, 586, 855
PsuI	RGATCY	2 cut(s)	123, 495
PsyI	GACNNNGTC	1 cut(s)	719
PvuII	CAGCTG	1 cut(s)	79
RsaI	GTAC	2 cut(s)	233, 576
RsaNI	GTAC	2 cut(s)	232, 575
RseI	CAYNNNNRTG	2 cut(s)	14, 369
SapI	GCTCTTC	1 cut(s)	44
SaqAI	TTAA	2 cut(s)	327, 423
SatI	GCNGC	2 cut(s)	55, 477
Sau96I	GGNCC	3 cut(s)	73, 586, 855
ScrFI	CCNGG	2 cut(s)	737, 853
SduI	GDGCHC	1 cut(s)	733
SexAI	ACCWGGT	1 cut(s)	735
SfaNI	GCATC	1 cut(s)	109
SinI	GGWCC	1 cut(s)	73
SmiMI	CAYNNNNRTG	2 cut(s)	14, 369
SphI	GCATGC	1 cut(s)	508
Sse9I	AATT	2 cut(s)	692, 802
SsiI	CCGC	5 cut(s)	54, 89, 177, 385, 562
SspI	AATATT	2 cut(s)	556, 789
SspMI	CTAG	1 cut(s)	260
StyD4I	CCNGG	2 cut(s)	735, 851
StyI	CCWWGG	2 cut(s)	117, 259
TaaI	ACNGT	3 cut(s)	13, 464, 809
TaiI	ACGT	1 cut(s)	576
TaqI	TCGA	2 cut(s)	150, 156
TasI	AATT	2 cut(s)	692, 802
TauI	GCSGC	1 cut(s)	57
Tru1I	TTAA	2 cut(s)	327, 423
Tru9I	TTAA	2 cut(s)	327, 423
TscAI	CASTG	1 cut(s)	573
TseFI	GTSAC	1 cut(s)	781
TseI	GCWGC	1 cut(s)	476
Tsp45I	GTSAC	1 cut(s)	781
TspDTI	ATGAA	2 cut(s)	176, 381
TspGWI	ACGGA	2 cut(s)	46, 98
TspRI	CASTG	1 cut(s)	573
Tth111I	GACNNNGTC	1 cut(s)	719
Van91I	CCANNNNNTGG	1 cut(s)	742
VpaK11BI	GGWCC	1 cut(s)	73
XapI	RAATTY	1 cut(s)	692
XceI	RCATGY	1 cut(s)	508
XmaJI	CCTAGG	1 cut(s)	259
XmnI	GAANNNNTTC	1 cut(s)	344
XspI	CTAG	1 cut(s)	260
Zsp2I	ATGCAT	1 cut(s)	510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.