Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0010656

Physical Location & Seq

Genomic Coordinates Reverse (-)

1934144 .. 1937686

Gene Structure 3543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g03260.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGGAGACGCGATTGTGGACGATCTCATACGGCGGCTGGTGTCGGCGAAGAGCGGCCGGACGACGAAGCAGGTGCAGATGACGGAGGCGGAGATACGGCACCTCTGCACCACCTCCAAGGAGATCTTTCTCAGTCAGCCCAACCTTCTCGAACTCGAAGCTCCCATCAAGATTTGCGGAGATGTTCATGGTCAGTTTTCTGATCTTTTACGGTTGTTTGAGTATGGTGGGTACCCACCTGAGGCCAACTATTTATTCCTGGGGGACTATGTTGATCGTGGGAAGCAAAGCATAGAGACAATATGCCTTCTCCTTGCGTATAAGATTAAATACAAGGAAAACTTCTTCCTCCTAAGAGGCAACCATGAATGTGCTTCCATCAACCGTATATACGGGTTCTATGATGAGTGCAAGAGAAGATTTAATGTTCGTATTTGGAAGGTTTTTACTGAGTGCTTCAACTGTCTGCCTGTGGCTGCTCTTGTTGATGAGAAGATCCTCTGCATGCATGGTGGTCTATCTCCTGATTTGAAAAATCTAGATCAGATTAGAAATATTGCCCGCCCAGTGGATGTACCAGATCAGGGACTTCTCTGTGATCTTTTGTGGGCTGATCCTGATAAAGATGTTGATGGTTGGGGAGAGAATGATCGTGGTGTGTCATTTACATTTGGGGCTGACACGGTTGCTGAATTTCTCCAGAAACATGATCTTGATCTTGTCTGCCGTGCTCACCAGGTTGTGGAAGATGGATATGAGTTTTTCGGAAAGAGGAAGCTGGTGACTATATTTTCAGCGCCAAATTACTGTGGCGAATTTGATAATGCTGGTGCCATGATGAGTGTGGATGATACATTGACATGTTCCTTCCAGATCTTGAAAGCATCTGAGAAGAAAGGAAAGTTTGGTGTAGGCAGCAACATGTTAAGACCAGGAACTCCACCTCATAAGGGCAAGGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03015 ko04022 ko04024 ko04113 ko04114 ko04218 ko04261 ko04270 ko04390 ko04510 ko04611 ko04720 ko04728 ko04750 ko04810 ko04910 ko04921 ko04931 ko05031 ko05034 ko05168 ko05205 map03015 map04022 map04024 map04113 map04114 map04218 map04261 map04270 map04390 map04510 map04611 map04720 map04728 map04750 map04810 map04910 map04921 map04931 map05031 map05034 map05168 map05205

Pfam Domains

Protein Families

Metallophos STPPase_N

Protein Analysis

321

Amino Acids

36.04

Weight (kDa)

5.72

Isoelectric Point (pI)

38.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STPPase_N	PF16891	6 - 53	6e-20	Serine-threonine protein phosphatase N-terminal domain
Metallophos	PF00149	55 - 248	1.1e-50	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010656)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64040 AT4G11240
fragaria_vesca	FvH4_5g03260
malus_domestica	MD14G1112500.v1.1 MD14G1112800.v1.1 MD14G1112900.v1.1
prunus_persica	Prupe.5G107100_v2.0.a1
pyrus_communis	pycom14g10790
rosa_chinensis	RchiOBHm_Chr7g0196511
rosa_laevigata	RLG00000004008
rosa_multiflora	Rmu_sc0013350.1_g000011 Rmu_sc0019310.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259240
rosa_rugosa	Rorug07G0034200 Rorug07G0034300
rosa_samantha	Rh7AG158400 Rh7BG160400 Rh7CG166800 Rh7DG159600
rosa_wichuraiana	Rw7G013840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	61
Acc36I	ACCTGC	1 cut(s)	61
Acc65I	GGTACC	1 cut(s)	231
AccB1I	GGYRCC	3 cut(s)	99, 231, 830
AccB7I	CCANNNNNTGG	1 cut(s)	742
AccBSI	CCGCTC	1 cut(s)	54
AccII	CGCG	1 cut(s)	11
AciI	CCGC	5 cut(s)	34, 54, 89, 177, 562
AclWI	GGATC	2 cut(s)	490, 608
AcoI	YGGCCR	1 cut(s)	55
AcsI	RAATTY	2 cut(s)	692, 815
AfaI	GTAC	2 cut(s)	233, 576
AfiI	CCNNNNNNNGG	5 cut(s)	241, 568, 584, 742, 950
AflIII	ACRYGT	2 cut(s)	860, 921
AgsI	TTSAA	3 cut(s)	460, 532, 880
AjnI	CCWGG	3 cut(s)	258, 735, 931
AjuI	GAANNNNNNNTTGG	2 cut(s)	239, 271
AluBI	AGCT	2 cut(s)	161, 778
AluI	AGCT	2 cut(s)	161, 778
Alw21I	GWGCWC	1 cut(s)	733
Alw26I	GTCTC	1 cut(s)	290
AlwI	GGATC	2 cut(s)	490, 608
AoxI	GGCC	2 cut(s)	55, 243
ApeKI	GCWGC	2 cut(s)	476, 915
ApoI	RAATTY	2 cut(s)	692, 815
Asp718I	GGTACC	1 cut(s)	231
AspLEI	GCGC	1 cut(s)	799
AsuHPI	GGTGA	2 cut(s)	725, 793
AxyI	CCTNAGG	1 cut(s)	240
BanI	GGYRCC	3 cut(s)	99, 231, 830
Bbv12I	GWGCWC	1 cut(s)	733
BbvI	GCAGC	2 cut(s)	463, 927
BccI	CCATC	4 cut(s)	173, 386, 626, 743
BceAI	ACGGC	3 cut(s)	47, 113, 711
BcgI	CGANNNNNNTGC	2 cut(s)	55, 89
BciT130I	CCWGG	3 cut(s)	260, 737, 933
BcoDI	GTCTC	1 cut(s)	290
BfaI	CTAG	1 cut(s)	539
BfoI	RGCGCY	1 cut(s)	800
BfuAI	ACCTGC	1 cut(s)	61
BglII	AGATCT	2 cut(s)	123, 873
BisI	GCNGC	4 cut(s)	35, 55, 477, 916
BlsI	GCNGC	4 cut(s)	36, 56, 478, 917
Bme1390I	CCNGG	3 cut(s)	260, 737, 933
BmiI	GGNNCC	3 cut(s)	101, 233, 832
BmrFI	CCNGG	3 cut(s)	260, 737, 933
BmrI	ACTGGG	1 cut(s)	560
BmsI	GCATC	1 cut(s)	893
BmuI	ACTGGG	1 cut(s)	560
BpmI	CTGGAG	1 cut(s)	683
BsaBI	GATNNNNATC	1 cut(s)	714
BsaJI	CCNNGG	2 cut(s)	117, 259
Bsc4I	CCNNNNNNNGG	5 cut(s)	241, 568, 584, 742, 950
Bse1I	ACTGG	1 cut(s)	566
Bse21I	CCTNAGG	1 cut(s)	240
Bse8I	GATNNNNATC	1 cut(s)	714
BseBI	CCWGG	3 cut(s)	260, 737, 933
BseDI	CCNNGG	2 cut(s)	117, 259
BseGI	GGATG	2 cut(s)	577, 853
BseJI	GATNNNNATC	1 cut(s)	714
BseLI	CCNNNNNNNGG	5 cut(s)	241, 568, 584, 742, 950
BseMII	CTCAG	4 cut(s)	145, 231, 441, 879
BseNI	ACTGG	1 cut(s)	566
BseX3I	CGGCCG	1 cut(s)	55
BseXI	GCAGC	2 cut(s)	463, 927
BsgI	GTGCAG	2 cut(s)	91, 95
Bsh1236I	CGCG	1 cut(s)	11
Bsh1285I	CGRYCG	1 cut(s)	58
BshFI	GGCC	2 cut(s)	57, 245
BshNI	GGYRCC	3 cut(s)	99, 231, 830
BsiEI	CGRYCG	1 cut(s)	58
BsiHKAI	GWGCWC	1 cut(s)	733
BsiSI	CCGG	1 cut(s)	58
BslFI	GGGAC	2 cut(s)	278, 600
BslI	CCNNNNNNNGG	5 cut(s)	241, 568, 584, 742, 950
BsmAI	GTCTC	1 cut(s)	290
BsmFI	GGGAC	2 cut(s)	278, 600
BsnI	GGCC	2 cut(s)	57, 245
Bsp1286I	GDGCHC	1 cut(s)	733
BspACI	CCGC	5 cut(s)	34, 54, 89, 177, 562
BspANI	GGCC	2 cut(s)	57, 245
BspCNI	CTCAG	4 cut(s)	144, 232, 442, 880
BspFNI	CGCG	1 cut(s)	11
BspLI	GGNNCC	3 cut(s)	101, 233, 832
BspMI	ACCTGC	1 cut(s)	61
BspPI	GGATC	2 cut(s)	490, 608
BspQI	GCTCTTC	1 cut(s)	44
BspT107I	GGYRCC	3 cut(s)	99, 231, 830
BsrBI	CCGCTC	1 cut(s)	54
BsrI	ACTGG	1 cut(s)	566
BssECI	CCNNGG	2 cut(s)	117, 259
BssT1I	CCWWGG	1 cut(s)	117
Bst2UI	CCWGG	3 cut(s)	260, 737, 933
Bst4CI	ACNGT	5 cut(s)	213, 386, 464, 685, 809
Bst6I	CTCTTC	1 cut(s)	44
BstC8I	GCNNGC	2 cut(s)	506, 562
BstDEI	CTNAG	5 cut(s)	131, 240, 353, 450, 888
BstF5I	GGATG	2 cut(s)	577, 853
BstFNI	CGCG	1 cut(s)	11
BstH2I	RGCGCY	1 cut(s)	800
BstHHI	GCGC	1 cut(s)	799
BstMAI	GTCTC	1 cut(s)	290
BstMCI	CGRYCG	1 cut(s)	58
BstNI	CCWGG	3 cut(s)	260, 737, 933
BstNSI	RCATGY	3 cut(s)	508, 864, 925
BstSCI	CCNGG	3 cut(s)	258, 735, 931
BstUI	CGCG	1 cut(s)	11
BstV1I	GCAGC	2 cut(s)	463, 927
BstX2I	RGATCY	3 cut(s)	123, 495, 873
BstYI	RGATCY	3 cut(s)	123, 495, 873
BstZI	CGGCCG	1 cut(s)	55
Bsu36I	CCTNAGG	1 cut(s)	240
BsuRI	GGCC	2 cut(s)	57, 245
BtsCI	GGATG	2 cut(s)	577, 853
BtsIMutI	CAGTG	1 cut(s)	573
BveI	ACCTGC	1 cut(s)	61
Cac8I	GCNNGC	2 cut(s)	506, 562
CfoI	GCGC	1 cut(s)	799
CseI	GACGC	1 cut(s)	17
CsiI	ACCWGGT	1 cut(s)	735
Csp6I	GTAC	2 cut(s)	232, 575
CviAII	CATG	8 cut(s)	188, 365, 505, 509, 707, 835, 861, 922
CviQI	GTAC	2 cut(s)	232, 575
DdeI	CTNAG	5 cut(s)	131, 240, 353, 450, 888
EaeI	YGGCCR	1 cut(s)	55
EagI	CGGCCG	1 cut(s)	55
Eam1104I	CTCTTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	44
EciI	GGCGGA	1 cut(s)	104
EclXI	CGGCCG	1 cut(s)	55
Eco130I	CCWWGG	1 cut(s)	117
Eco52I	CGGCCG	1 cut(s)	55
Eco81I	CCTNAGG	1 cut(s)	240
EcoRII	CCWGG	3 cut(s)	258, 735, 931
EcoT14I	CCWWGG	1 cut(s)	117
EcoT22I	ATGCAT	1 cut(s)	510
ErhI	CCWWGG	1 cut(s)	117
FaeI	CATG	8 cut(s)	191, 368, 508, 512, 710, 838, 864, 925
FalI	AAGNNNNNCTT	4 cut(s)	110, 142, 326, 358
FaqI	GGGAC	2 cut(s)	278, 600
FatI	CATG	8 cut(s)	187, 364, 504, 508, 706, 834, 860, 921
FauI	CCCGC	1 cut(s)	569
Fnu4HI	GCNGC	4 cut(s)	35, 55, 477, 916
FokI	GGATG	2 cut(s)	584, 860
Fsp4HI	GCNGC	4 cut(s)	35, 55, 477, 916
FspBI	CTAG	1 cut(s)	539
GlaI	GCGC	1 cut(s)	798
GluI	GCNGC	4 cut(s)	35, 55, 477, 916
GsuI	CTGGAG	1 cut(s)	683
HaeII	RGCGCY	1 cut(s)	800
HaeIII	GGCC	2 cut(s)	57, 245
HapII	CCGG	1 cut(s)	58
HgaI	GACGC	1 cut(s)	17
HhaI	GCGC	1 cut(s)	799
Hin1II	CATG	8 cut(s)	191, 368, 508, 512, 710, 838, 864, 925
Hin6I	GCGC	1 cut(s)	797
HinP1I	GCGC	1 cut(s)	797
HpaII	CCGG	1 cut(s)	58
HphI	GGTGA	2 cut(s)	725, 793
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	4 cut(s)	202, 546, 767, 889
Hpy188III	TCNNGA	9 cut(s)	149, 169, 524, 539, 617, 700, 713, 871, 877
Hpy8I	GTNNAC	1 cut(s)	19
Hpy99I	CGWCG	1 cut(s)	67
HpyAV	CCTTC	4 cut(s)	155, 317, 433, 877
HpyCH4III	ACNGT	5 cut(s)	213, 386, 464, 685, 809
HpyCH4V	TGCA	5 cut(s)	76, 108, 411, 504, 508
HpyF3I	CTNAG	5 cut(s)	131, 240, 353, 450, 888
Hsp92II	CATG	8 cut(s)	191, 368, 508, 512, 710, 838, 864, 925
HspAI	GCGC	1 cut(s)	797
KpnI	GGTACC	1 cut(s)	235
LguI	GCTCTTC	1 cut(s)	44
LmnI	GCTCC	1 cut(s)	166
Lsp1109I	GCAGC	2 cut(s)	463, 927
LweI	GCATC	1 cut(s)	893
MabI	ACCWGGT	1 cut(s)	735
MaeI	CTAG	1 cut(s)	539
MaeIII	GTNAC	1 cut(s)	781
MbiI	CCGCTC	1 cut(s)	54
MboII	GAAGA	6 cut(s)	61, 337, 429, 505, 758, 904
MflI	RGATCY	3 cut(s)	123, 495, 873
MhlI	GDGCHC	1 cut(s)	733
MluCI	AATT	3 cut(s)	692, 802, 815
MnlI	CCTC	9 cut(s)	79, 113, 124, 235, 350, 359, 509, 765, 954
Mph1103I	ATGCAT	1 cut(s)	510
MseI	TTAA	3 cut(s)	327, 423, 926
MslI	CAYNNNNRTG	2 cut(s)	369, 859
MspI	CCGG	1 cut(s)	58
MspR9I	CCNGG	3 cut(s)	260, 737, 933
MvaI	CCWGG	3 cut(s)	260, 737, 933
MvnI	CGCG	1 cut(s)	11
NlaIII	CATG	8 cut(s)	191, 368, 508, 512, 710, 838, 864, 925
NlaIV	GGNNCC	3 cut(s)	101, 233, 832
NmuCI	GTSAC	1 cut(s)	781
NsiI	ATGCAT	1 cut(s)	510
NspI	RCATGY	3 cut(s)	508, 864, 925
PaeI	GCATGC	1 cut(s)	508
PaqCI	CACCTGC	1 cut(s)	61
PciI	ACATGT	2 cut(s)	860, 921
PciSI	GCTCTTC	1 cut(s)	44
PflMI	CCANNNNNTGG	1 cut(s)	742
PkrI	GCNGC	4 cut(s)	36, 56, 478, 917
PscI	ACATGT	2 cut(s)	860, 921
Psp6I	CCWGG	3 cut(s)	258, 735, 931
PspGI	CCWGG	3 cut(s)	258, 735, 931
PspN4I	GGNNCC	3 cut(s)	101, 233, 832
PsuI	RGATCY	3 cut(s)	123, 495, 873
RsaI	GTAC	2 cut(s)	233, 576
RsaNI	GTAC	2 cut(s)	232, 575
RseI	CAYNNNNRTG	2 cut(s)	369, 859
SapI	GCTCTTC	1 cut(s)	44
SaqAI	TTAA	3 cut(s)	327, 423, 926
SatI	GCNGC	4 cut(s)	35, 55, 477, 916
ScrFI	CCNGG	3 cut(s)	260, 737, 933
SduI	GDGCHC	1 cut(s)	733
SexAI	ACCWGGT	1 cut(s)	735
SfaNI	GCATC	1 cut(s)	893
SmiMI	CAYNNNNRTG	2 cut(s)	369, 859
SphI	GCATGC	1 cut(s)	508
Sse9I	AATT	3 cut(s)	692, 802, 815
SsiI	CCGC	5 cut(s)	34, 54, 89, 177, 562
SspI	AATATT	1 cut(s)	556
SspMI	CTAG	1 cut(s)	539
StyD4I	CCNGG	3 cut(s)	258, 735, 931
StyI	CCWWGG	1 cut(s)	117
TaaI	ACNGT	5 cut(s)	213, 386, 464, 685, 809
TaqI	TCGA	2 cut(s)	150, 156
TasI	AATT	3 cut(s)	692, 802, 815
TauI	GCSGC	2 cut(s)	37, 57
Tru1I	TTAA	3 cut(s)	327, 423, 926
Tru9I	TTAA	3 cut(s)	327, 423, 926
TscAI	CASTG	1 cut(s)	573
TseFI	GTSAC	1 cut(s)	781
TseI	GCWGC	2 cut(s)	476, 915
Tsp45I	GTSAC	1 cut(s)	781
TspDTI	ATGAA	2 cut(s)	176, 381
TspGWI	ACGGA	1 cut(s)	98
TspRI	CASTG	1 cut(s)	573
Van91I	CCANNNNNTGG	1 cut(s)	742
XapI	RAATTY	2 cut(s)	692, 815
XbaI	TCTAGA	1 cut(s)	538
XceI	RCATGY	3 cut(s)	508, 864, 925
XcmI	CCANNNNNNNNNTGG	1 cut(s)	841
XspI	CTAG	1 cut(s)	539
Zsp2I	ATGCAT	1 cut(s)	510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.