Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010472

Physical Location & Seq

Genomic Coordinates Forward (+)

6938299 .. 6940648

Gene Structure 2350 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G11400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1722 bp

ATGGGAAGTTTTAATGATACTTCATGTTCATATGTTGATGTTGAGATTAAGTATGTTGATGAATGTGAGGAGAGGTTAAGGAGATTGTTTGATCAAGCTTTGTTGGTTTTTCTTGAGGAAGAGGGTAGTATAAAGCCTCTCCCTGCAGTTATAGGTGATGGCAAAAATGTTGATTTGTTTAAGCTGTTTGTATTGGTGAGGGAGAGGGAAGGGTTTGATACTGTGTCTAGGAAAAGGTTGTGGGAAGTAGTGGCTGAGAAGTTAGGCTTTGATTGTTCACTGGTTCCTTCTTTGATATTGATTTACTTGAAGTATTTGAACCGGATGGAGAAATGGGCGGTGGAGGAATCTAGGATTGTGAATTGGGATAATAAGGATAGTGAAAAGAAAGGGTGTTATAGTGGTATGTTGCATGAGTTAGGGAATGGTTTTAAGAGTTTGTTGGACAATGGGAAGTGTCAGAAACGTAACAGAGCTGTTGCGTTTGGTTGTAACCATATGGAAGAGTCGTGTTCAGAGTTTGATAGGTCTAGGAAGAGGTTTAGAGAGAGTGATGATGATGATAAAGGAGTAGGACTGTCTAGTGTTGTTATTAGGGAGGAGACTGTTGTATGTGCTGTGGAAGAAGGTTTGTCGGATTTTTCCTTGGAGAAGCGAGACGATTTACCGGGAATGTTGAAGTGGCTGGCTTTGGTTGCAACATCTCCTCATGATCCTGCCATTGGAGTTATACCGCATAGTTCAAAATGGAAGCAGTATAACGGTAACAAGTGTTGGCTCCAAGTGGCTAGAGCAAAAAACTCTTTGCTGGTTCAAAGAGACAATGCTGAACTCAGATATAGATATCATCCATTTCGGGGTCACCAAAATATACATCATCCGTCTATGTATGAAGATGATCGAAAGTCGATAGGGAGGTTAAGATACAGCATAAGACCTCCAAATTTATCCAAACACTGTTCGAGCTCGTGTTGCAATGGAAGCAGTTTGGTCTCTCTATCTAAATCAAGATCTACCAAATGCAGAAAACTGACGATCATTGCTTCTGAGAGAGCAGGCCTTACTGCAGGAACATCTAGAGCCAGAAAGCGAAACAAAGCAGAGATCCCGAGAAGGTGTATTAAAGTAGGACATCAACACCAAGCCCAAGTGGATGAATGGACAGAGTCCGGTGTAGATAGCGATAGTAAATGGTTAGGAACCCGTATATGGCCGCCAGAAAATAGTGAAGCTTTAGATCAGACGCTTGGAAATGATTTAGTTGGAAAAGGAAGGCCAGATTCTTGCAGCTGTGAGCTCTCTGGTTTTGTGGAATGCACTAGGTTGCACATTGCAGAGAAGAGAATGGAACTGAAACGTGAGCTCGGCGATGACTTTTTCCATTGGAGATTCAATCAAATGGGAGAAGAAGTGTGTCTAAGATGGACAGAAGAAGAAGAGAAGAGGTTTAAAGACATGATCATCGCGGATCCTCAATCTTTCTGGACAAATGCGGCAAAAAATTTCCCAAAGAAGAAGAGAGAGGAGCTTGTGAGTTACTACTTCAACGTCTTCTTGATTAACAGAAGACGGTATCAGAACCGTGTGACTCCAAAAAGTATAGACAGTGATGACGAAGGAGCGTTTGGTAGTGTTGGTGGCAGTTTTGGTCGTGATGCTGTTACTTCGTCTGGTTCAGATGTTATGATCTGTGCTCAGAATCGTCAGTGTGAGGACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000118 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005773 GO:0006325 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009555 GO:0009893 GO:0009987 GO:0010468 GO:0010604 GO:0010628 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019222 GO:0019538 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048518 GO:0048555 GO:0048556 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0051276 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0098732 GO:1901564 GO:1902494

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ARID

Protein Analysis

573

Amino Acids

65.67

Weight (kDa)

7.98

Isoelectric Point (pI)

46.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARID	PF01388	28 - 109	1.9e-14	ARID/BRIGHT DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010472)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11400 AT4G11400
fragaria_vesca	FvH4_5g02760 FvH4_5g02770 FvH4_5g02771 FvH4_5g02772
malus_domestica	MD06G1087600.v1.1 MD14G1108400.v1.1
prunus_persica	Prupe.5G103500_v2.0.a1
pyrus_communis	pycom06g08360 pycom14g10310
rosa_chinensis	RchiOBHm_Chr7g0197161
rosa_laevigata	RLG00000003956
rosa_multiflora	Rmu_ssc0000465.1_g000021
rosa_roxburghii	Rroxscaffold_3G00258640
rosa_rugosa	Rorug07G0038200
rosa_samantha	Rh7AG162900 Rh7BG164900 Rh7CG170900 Rh7DG164300
rosa_wichuraiana	Rw7G014220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	1466
AciI	CCGC	5 cut(s)	338, 734, 1214, 1466, 1493
AclWI	GGATC	4 cut(s)	707, 1099, 1463, 1476
AcoI	YGGCCR	1 cut(s)	1211
AcsI	RAATTY	2 cut(s)	943, 1501
AfiI	CCNNNNNNNGG	3 cut(s)	722, 857, 1209
AgsI	TTSAA	7 cut(s)	310, 319, 679, 744, 815, 1393, 1546
AjuI	GAANNNNNNNTTGG	2 cut(s)	1608, 1640
AluBI	AGCT	9 cut(s)	98, 184, 476, 966, 1232, 1290, 1297, 1363, 1528
AluI	AGCT	9 cut(s)	98, 184, 476, 966, 1232, 1290, 1297, 1363, 1528
Alw21I	GWGCWC	4 cut(s)	968, 1299, 1365, 1696
Alw26I	GTCTC	4 cut(s)	596, 651, 813, 997
AlwI	GGATC	4 cut(s)	707, 1099, 1463, 1476
Ama87I	CYCGRG	1 cut(s)	1108
AoxI	GGCC	3 cut(s)	1057, 1211, 1274
ApeKI	GCWGC	1 cut(s)	1287
ApoI	RAATTY	2 cut(s)	943, 1501
AsuC2I	CCSGG	1 cut(s)	669
AsuHPI	GGTGA	3 cut(s)	167, 208, 854
AvaI	CYCGRG	1 cut(s)	1108
BamHI	GGATCC	1 cut(s)	1468
BanII	GRGCYC	3 cut(s)	968, 1299, 1365
BauI	CACGAG	1 cut(s)	967
BbsI	GAAGAC	2 cut(s)	1543, 1573
Bbv12I	GWGCWC	4 cut(s)	968, 1299, 1365, 1696
BbvI	GCAGC	1 cut(s)	1299
BccI	CCATC	3 cut(s)	152, 319, 1416
BclI	TGATCA	2 cut(s)	91, 1458
BcnI	CCSGG	1 cut(s)	669
BcoDI	GTCTC	4 cut(s)	596, 651, 813, 997
BfaI	CTAG	7 cut(s)	228, 351, 531, 582, 789, 1077, 1320
BfmI	CTRYAG	2 cut(s)	144, 1065
BglII	AGATCT	1 cut(s)	1010
BisI	GCNGC	3 cut(s)	1214, 1288, 1494
BlsI	GCNGC	3 cut(s)	1215, 1289, 1495
Bme1390I	CCNGG	1 cut(s)	669
BmeT110I	CYCGRG	1 cut(s)	1108
BmiI	GGNNCC	4 cut(s)	285, 779, 1201, 1470
BmrFI	CCNGG	1 cut(s)	669
BmsI	GCATC	1 cut(s)	1645
BpiI	GAAGAC	2 cut(s)	1543, 1573
BpuEI	CTTGAG	1 cut(s)	134
BpuMI	CCSGG	1 cut(s)	669
BsaI	GGTCTC	1 cut(s)	997
BsaJI	CCNNGG	1 cut(s)	645
BsaWI	WCCGGW	2 cut(s)	321, 1169
BsaXI	ACNNNNNCTCC	2 cut(s)	1395, 1425
Bsc4I	CCNNNNNNNGG	3 cut(s)	722, 857, 1209
Bse1I	ACTGG	1 cut(s)	285
Bse3DI	GCAATG	3 cut(s)	982, 1038, 1329
BseDI	CCNNGG	1 cut(s)	645
BseGI	GGATG	4 cut(s)	330, 847, 877, 1159
BseLI	CCNNNNNNNGG	3 cut(s)	722, 857, 1209
BseMI	GCAATG	3 cut(s)	982, 1038, 1329
BseMII	CTCAG	4 cut(s)	246, 847, 1038, 1709
BseNI	ACTGG	1 cut(s)	285
BseRI	GAGGAG	4 cut(s)	83, 614, 696, 1538
BseXI	GCAGC	1 cut(s)	1299
Bsh1236I	CGCG	1 cut(s)	1466
BshFI	GGCC	3 cut(s)	1059, 1213, 1276
BsiHKAI	GWGCWC	4 cut(s)	968, 1299, 1365, 1696
BsiHKCI	CYCGRG	1 cut(s)	1108
BsiSI	CCGG	3 cut(s)	322, 668, 1170
BslI	CCNNNNNNNGG	3 cut(s)	722, 857, 1209
BsmAI	GTCTC	4 cut(s)	596, 651, 813, 997
BsmBI	CGTCTC	1 cut(s)	651
BsmI	GAATGC	1 cut(s)	1319
BsnI	GGCC	3 cut(s)	1059, 1213, 1276
Bso31I	GGTCTC	1 cut(s)	997
BsoBI	CYCGRG	1 cut(s)	1108
Bsp1286I	GDGCHC	4 cut(s)	968, 1299, 1365, 1696
BspACI	CCGC	5 cut(s)	338, 734, 1214, 1466, 1493
BspANI	GGCC	3 cut(s)	1059, 1213, 1276
BspCNI	CTCAG	4 cut(s)	247, 846, 1039, 1708
BspFNI	CGCG	1 cut(s)	1466
BspHI	TCATGA	1 cut(s)	709
BspLI	GGNNCC	4 cut(s)	285, 779, 1201, 1470
BspMAI	CTGCAG	2 cut(s)	148, 1069
BspPI	GGATC	4 cut(s)	707, 1099, 1463, 1476
BspTNI	GGTCTC	1 cut(s)	997
BsrDI	GCAATG	3 cut(s)	982, 1038, 1329
BsrI	ACTGG	1 cut(s)	285
BssECI	CCNNGG	1 cut(s)	645
BssSI	CACGAG	1 cut(s)	967
BssT1I	CCWWGG	1 cut(s)	645
Bst2BI	CACGAG	1 cut(s)	967
Bst4CI	ACNGT	8 cut(s)	223, 579, 607, 764, 959, 1572, 1583, 1607
Bst6I	CTCTTC	7 cut(s)	114, 498, 530, 1334, 1431, 1436, 1511
BstC8I	GCNNGC	2 cut(s)	687, 1057
BstDEI	CTNAG	5 cut(s)	255, 833, 1047, 1418, 1695
BstEII	GGTNACC	1 cut(s)	860
BstF5I	GGATG	4 cut(s)	330, 847, 877, 1159
BstFNI	CGCG	1 cut(s)	1466
BstMAI	GTCTC	4 cut(s)	596, 651, 813, 997
BstMWI	GCNNNNNNNGC	3 cut(s)	695, 972, 981
BstPI	GGTNACC	1 cut(s)	860
BstSCI	CCNGG	1 cut(s)	667
BstSFI	CTRYAG	2 cut(s)	144, 1065
BstUI	CGCG	1 cut(s)	1466
BstV1I	GCAGC	1 cut(s)	1299
BstV2I	GAAGAC	2 cut(s)	1543, 1573
BstX2I	RGATCY	3 cut(s)	1010, 1104, 1468
BstYI	RGATCY	3 cut(s)	1010, 1104, 1468
BsuRI	GGCC	3 cut(s)	1059, 1213, 1276
BtgZI	GCGATG	2 cut(s)	1383, 1447
BtsCI	GGATG	4 cut(s)	330, 847, 877, 1159
BtsIMutI	CAGTG	4 cut(s)	278, 955, 1612, 1712
Cac8I	GCNNGC	2 cut(s)	687, 1057
CciI	TCATGA	1 cut(s)	709
CseI	GACGC	1 cut(s)	1252
CviAII	CATG	4 cut(s)	24, 413, 710, 1456
DdeI	CTNAG	5 cut(s)	255, 833, 1047, 1418, 1695
DraI	TTTAAA	1 cut(s)	1450
EaeI	YGGCCR	1 cut(s)	1211
Eam1104I	CTCTTC	7 cut(s)	114, 498, 530, 1334, 1431, 1436, 1511
EarI	CTCTTC	7 cut(s)	114, 498, 530, 1334, 1431, 1436, 1511
Ecl136II	GAGCTC	3 cut(s)	966, 1297, 1363
Eco130I	CCWWGG	1 cut(s)	645
Eco147I	AGGCCT	1 cut(s)	1059
Eco24I	GRGCYC	3 cut(s)	968, 1299, 1365
Eco31I	GGTCTC	1 cut(s)	997
Eco32I	GATATC	1 cut(s)	845
Eco53kI	GAGCTC	3 cut(s)	966, 1297, 1363
Eco88I	CYCGRG	1 cut(s)	1108
Eco91I	GGTNACC	1 cut(s)	860
EcoICRI	GAGCTC	3 cut(s)	966, 1297, 1363
EcoO65I	GGTNACC	1 cut(s)	860
EcoRV	GATATC	1 cut(s)	845
EcoT14I	CCWWGG	1 cut(s)	645
EcoT38I	GRGCYC	3 cut(s)	968, 1299, 1365
ErhI	CCWWGG	1 cut(s)	645
Esp3I	CGTCTC	1 cut(s)	651
FaeI	CATG	4 cut(s)	27, 416, 713, 1459
FalI	AAGNNNNNCTT	2 cut(s)	251, 283
FatI	CATG	4 cut(s)	23, 412, 709, 1455
FauNDI	CATATG	2 cut(s)	31, 498
FbaI	TGATCA	2 cut(s)	91, 1458
Fnu4HI	GCNGC	3 cut(s)	1214, 1288, 1494
FokI	GGATG	4 cut(s)	337, 834, 864, 1166
FriOI	GRGCYC	3 cut(s)	968, 1299, 1365
Fsp4HI	GCNGC	3 cut(s)	1214, 1288, 1494
FspBI	CTAG	7 cut(s)	228, 351, 531, 582, 789, 1077, 1320
GluI	GCNGC	3 cut(s)	1214, 1288, 1494
HaeIII	GGCC	3 cut(s)	1059, 1213, 1276
HapII	CCGG	3 cut(s)	322, 668, 1170
HgaI	GACGC	1 cut(s)	1252
Hin1II	CATG	4 cut(s)	27, 416, 713, 1459
HindIII	AAGCTT	2 cut(s)	96, 1230
HinfI	GANTC	7 cut(s)	347, 506, 1166, 1280, 1389, 1588, 1699
HpaII	CCGG	3 cut(s)	322, 668, 1170
HphI	GGTGA	3 cut(s)	167, 208, 854
Hpy166II	GTNNAC	1 cut(s)	278
Hpy188I	TCNGA	9 cut(s)	462, 517, 637, 836, 1048, 1242, 1578, 1678, 1698
Hpy188III	TCNNGA	8 cut(s)	113, 710, 1008, 1077, 1108, 1483, 1555, 1652
Hpy8I	GTNNAC	1 cut(s)	278
HpyAV	CCTTC	6 cut(s)	203, 297, 620, 1107, 1266, 1610
HpyCH4III	ACNGT	8 cut(s)	223, 579, 607, 764, 959, 1572, 1583, 1607
HpyCH4IV	ACGT	3 cut(s)	466, 1357, 1548
HpyF10VI	GCNNNNNNNGC	3 cut(s)	695, 972, 981
HpyF3I	CTNAG	5 cut(s)	255, 833, 1047, 1418, 1695
HpySE526I	ACGT	3 cut(s)	466, 1357, 1548
Hsp92II	CATG	4 cut(s)	27, 416, 713, 1459
Ksp22I	TGATCA	2 cut(s)	91, 1458
LmnI	GCTCC	3 cut(s)	783, 1525, 1619
Lsp1109I	GCAGC	1 cut(s)	1299
LweI	GCATC	1 cut(s)	1645
MaeI	CTAG	7 cut(s)	228, 351, 531, 582, 789, 1077, 1320
MaeII	ACGT	3 cut(s)	466, 1357, 1548
MaeIII	GTNAC	7 cut(s)	467, 491, 764, 860, 1535, 1585, 1660
MflI	RGATCY	3 cut(s)	1010, 1104, 1468
MhlI	GDGCHC	4 cut(s)	968, 1299, 1365, 1696
MluCI	AATT	3 cut(s)	361, 943, 1501
MlyI	GAGTC	3 cut(s)	515, 1175, 1582
MmeI	TCCRAC	3 cut(s)	423, 615, 1243
MseI	TTAA	9 cut(s)	12, 48, 77, 180, 432, 920, 1122, 1449, 1560
MspA1I	CMGCKG	1 cut(s)	1290
MspI	CCGG	3 cut(s)	322, 668, 1170
MspR9I	CCNGG	1 cut(s)	669
Mva1269I	GAATGC	1 cut(s)	1319
MvnI	CGCG	1 cut(s)	1466
MwoI	GCNNNNNNNGC	3 cut(s)	695, 972, 981
NciI	CCSGG	1 cut(s)	669
NdeI	CATATG	2 cut(s)	31, 498
NlaIII	CATG	4 cut(s)	27, 416, 713, 1459
NlaIV	GGNNCC	4 cut(s)	285, 779, 1201, 1470
NmeAIII	GCCGAG	1 cut(s)	1344
NmuCI	GTSAC	2 cut(s)	860, 1585
PagI	TCATGA	1 cut(s)	709
PceI	AGGCCT	1 cut(s)	1059
PctI	GAATGC	1 cut(s)	1319
PfeI	GAWTC	4 cut(s)	347, 1280, 1389, 1699
PflFI	GACNNNGTC	1 cut(s)	1165
PkrI	GCNGC	3 cut(s)	1215, 1289, 1495
PleI	GAGTC	3 cut(s)	514, 1174, 1582
PpsI	GAGTC	3 cut(s)	514, 1174, 1582
Psp124BI	GAGCTC	3 cut(s)	968, 1299, 1365
PspEI	GGTNACC	1 cut(s)	860
PspN4I	GGNNCC	4 cut(s)	285, 779, 1201, 1470
PstI	CTGCAG	2 cut(s)	148, 1069
PsuI	RGATCY	3 cut(s)	1010, 1104, 1468
PsyI	GACNNNGTC	1 cut(s)	1165
PvuII	CAGCTG	1 cut(s)	1290
SacI	GAGCTC	3 cut(s)	968, 1299, 1365
SaqAI	TTAA	9 cut(s)	12, 48, 77, 180, 432, 920, 1122, 1449, 1560
SatI	GCNGC	3 cut(s)	1214, 1288, 1494
SchI	GAGTC	3 cut(s)	515, 1175, 1582
ScrFI	CCNGG	1 cut(s)	669
SduI	GDGCHC	4 cut(s)	968, 1299, 1365, 1696
SfaNI	GCATC	1 cut(s)	1645
SfcI	CTRYAG	2 cut(s)	144, 1065
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
Sse9I	AATT	3 cut(s)	361, 943, 1501
SseBI	AGGCCT	1 cut(s)	1059
SsiI	CCGC	5 cut(s)	338, 734, 1214, 1466, 1493
SspMI	CTAG	7 cut(s)	228, 351, 531, 582, 789, 1077, 1320
SstI	GAGCTC	3 cut(s)	968, 1299, 1365
StuI	AGGCCT	1 cut(s)	1059
StyD4I	CCNGG	1 cut(s)	667
StyI	CCWWGG	1 cut(s)	645
TaaI	ACNGT	8 cut(s)	223, 579, 607, 764, 959, 1572, 1583, 1607
TaiI	ACGT	3 cut(s)	469, 1360, 1551
TaqI	TCGA	3 cut(s)	901, 908, 962
TasI	AATT	3 cut(s)	361, 943, 1501
TauI	GCSGC	2 cut(s)	1216, 1496
TfiI	GAWTC	4 cut(s)	347, 1280, 1389, 1699
Tru1I	TTAA	9 cut(s)	12, 48, 77, 180, 432, 920, 1122, 1449, 1560
Tru9I	TTAA	9 cut(s)	12, 48, 77, 180, 432, 920, 1122, 1449, 1560
TscAI	CASTG	4 cut(s)	285, 962, 1612, 1712
TseFI	GTSAC	2 cut(s)	860, 1585
TseI	GCWGC	1 cut(s)	1287
Tsp45I	GTSAC	2 cut(s)	860, 1585
TspDTI	ATGAA	5 cut(s)	12, 18, 75, 906, 1170
TspGWI	ACGGA	1 cut(s)	870
TspRI	CASTG	4 cut(s)	285, 962, 1612, 1712
Tth111I	GACNNNGTC	1 cut(s)	1165
XapI	RAATTY	2 cut(s)	943, 1501
XbaI	TCTAGA	1 cut(s)	1076
XspI	CTAG	7 cut(s)	228, 351, 531, 582, 789, 1077, 1320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.