MD06G1087600.v1.1

AT-rich interactive domain-containing protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Reverse (-)
21422951 .. 21426016
3066 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1087600.v1.1.491

Sequence Viewer

Length: 1752 bp
ATGGCAGGATGGTCATCCTTAACAGCTGGGTCGGTCTCAGATTGCGTCGAAACTAATGACACATGTCAGAAAAATGGTGTTTTTCCTGAAACCAATCATGTTGGTTCTGTACAGGATGGTGTGGATTTTGATGAGGGTGATCAAAAGGGTAGGCTAAGATGTATGTTTGATCGAGTTTTAGCTGTTTTTCTTAAGGAAATTGGTGATGGAGGTGGTTTTGTTAGGCCTGTCCCAGCAGTGATTGGTGATAGGCAACCTGTTGATTTGTTCAAATTGTTCTGTGTGGTGAAAGATAGAGGTGGGATTGATTCGGTTTCGAAGAACATTTTTTGGTCTTTTGTTGCCAATGAATTGGGTTTTGATCAGGAAGCAATGTGTTCTGTGAAATTGATTTACTTTAAATATTTGAATGAGCTGGAGAAATGGTTTAGGGAGATTTGTGAAACTAGGCGTTCGGGAAATGGGGATTTGCATCCGTTGTCTTCGGAGTTGGTGAGAGAGTTTGGAGGTTTGTTGTCGGGTTGGCCAGAGCGGAAGGGCAAAAGTGATGGAGAGGTTCATCTGGTATCTGGAGAATGCAATGGTGATGATGACGAAAAAGTTTGTAATTACGATCAGAATGATATTTTGATATCACTATCTAGTCTCAGTAAAAAAGAAAATGATCGTAAAAGAAAGCGAGAATACTTAGTAGGAATGCTAAATTGGGTAGCCCAGGTTGCAAAGCAACCAAATGATCATTCAATTGGAGCAATACCAGGGCCAACTAAGTGGAAAGAGCATAGGAGCGATGACGAGTGCTGGGTCCAAGCACTTAGAGCAAAGGAGGCATTGCTGATAAGAAGGAATGTTAATTCAGAGGCTGAAGAATGTCTCCAGCAGAAGAAGCTAAAGATGCATCCATTGTTGTACGAAGATAATATTGTTGCTGGTCGCCAGTGCTCAGGGAGGTTTCGATGCAGTGAAAGGCTTCCTCATTCAGTTAAATCTCAATCATGCCCTTGTTGCCGTAAAAAAGAGGTGGAAAACGATTCTATGGAGAAAGCTCCCGCAGAAGTTGATTTATTGGCCACTGATGCAACGTCTGAGGAGAATCCCCGCGAAAAGGATGTCTCTATAGGCTCTCATGCTCAAGCTGATGTCCCTGAATGGACTGGGGTGGCTTCTGAAAGTGATATTAAATGGCTAGGCACACGGGTATGGCCCTTGAAACGTGAAGAAGACGGCCCCCTTAGTGAAACAGATCTTATTGGCCAAGGAAGACAAGATAAGTGTGGCTGTGGATTTCCAGGTTCTGTTGCATGTTTCCGATTTCACATTACTGAGGCTAGGATGAAATTGAAGAGAGAGCTTGGTTCCTTGTTCTATCATTGGCGATTTGATCGAATGGGTGAGGAAGTTTCTCTTCGGTGGACAGCTGAAGAAGAAAAGAGATTCAAGGATTTGGTAAAGTTAAATCACTCAAATTCTCCTTTTATTGAGGGAAATACCTCAAGTTCTTCTTCCTTTTGGGATAGTGCATCCAAGTGGTTTCTTAGAAAAACAAGGGAAGACTTGGTAAGCTATTACTTCAATGTGTTTGTTGTCCAGCGCAGAAGTTATCAAAATCGTGCAACTCCAAAAACCATTGATAGTGATGATGACGTAACAGAGTTGGGATCTCTAAGTCATGGGTTTAGGCGTGAGATAGTTGAGGTTTCAGCCAATTCTCTACCATGTTCTCTGAACCAGCAGTCCACTGATTTCGACTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

584

Amino Acids

66.01

Weight (kDa)

5.54

Isoelectric Point (pI)

47.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARID PF01388 73 - 138 7.1e-11 ARID/BRIGHT DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0010472)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 532
AccII CGCG 1 cut(s) 1101
AciI CCGC 3 cut(s) 532, 1050, 1099
AclWI GGATC 1 cut(s) 1666
AcoI YGGCCR 3 cut(s) 524, 1068, 1252
AcsI RAATTY 1 cut(s) 1465
AcuI CTGAAG 2 cut(s) 885, 1440
AfaI GTAC 2 cut(s) 111, 911
AfiI CCNNNNNNNGG 1 cut(s) 1105
AflII CTTAAG 1 cut(s) 191
AflIII ACRYGT 1 cut(s) 62
AgsI TTSAA 7 cut(s) 271, 409, 744, 1210, 1342, 1438, 1573
AjnI CCWGG 3 cut(s) 714, 757, 1288
AjuI GAANNNNNNNTTGG 4 cut(s) 688, 720, 724, 756
AloI GAACNNNNNNTCC 2 cut(s) 1718, 1750
AluBI AGCT 9 cut(s) 26, 182, 415, 889, 1046, 1136, 1351, 1418, 1563
AluI AGCT 9 cut(s) 26, 182, 415, 889, 1046, 1136, 1351, 1418, 1563
Alw21I GWGCWC 1 cut(s) 944
Alw26I GTCTC 4 cut(s) 40, 650, 878, 1117
AlwI GGATC 1 cut(s) 1666
AlwNI CAGNNNCTG 2 cut(s) 863, 1295
AoxI GGCC 7 cut(s) 224, 524, 761, 1068, 1202, 1225, 1252
ApoI RAATTY 1 cut(s) 1465
ArsI GACNNNNNNTTYG 2 cut(s) 1095, 1127
Asp700I GAANNNNTTC 1 cut(s) 969
AspLEI GCGC 1 cut(s) 1593
AspS9I GGNCC 4 cut(s) 761, 805, 1203, 1226
AsuHPI GGTGA 7 cut(s) 149, 215, 257, 298, 505, 596, 1403
AsuII TTCGAA 1 cut(s) 317
AvaII GGWCC 1 cut(s) 805
BalI TGGCCA 3 cut(s) 526, 1070, 1254
BbsI GAAGAC 4 cut(s) 474, 1227, 1267, 1557
Bbv12I GWGCWC 1 cut(s) 944
BccI CCATC 4 cut(s) 3, 110, 200, 542
BceAI ACGGC 2 cut(s) 993, 1240
BciT130I CCWGG 3 cut(s) 716, 759, 1290
BclI TGATCA 3 cut(s) 139, 361, 736
BcoDI GTCTC 4 cut(s) 40, 650, 878, 1117
BfaI CTAG 5 cut(s) 447, 642, 1187, 1329, 1750
BfmI CTRYAG 1 cut(s) 1116
BfrI CTTAAG 1 cut(s) 191
BglII AGATCT 1 cut(s) 1243
Bme1390I CCNGG 3 cut(s) 716, 759, 1290
Bme18I GGWCC 1 cut(s) 805
BmgT120I GGNCC 4 cut(s) 761, 805, 1203, 1226
BmiI GGNNCC 3 cut(s) 806, 1228, 1357
BmrFI CCNGG 3 cut(s) 716, 759, 1290
BmrI ACTGGG 1 cut(s) 1164
BmsI GCATC 6 cut(s) 481, 885, 907, 947, 1066, 1529
BmuI ACTGGG 1 cut(s) 1164
BoxI GACNNNNGTC 1 cut(s) 63
BpiI GAAGAC 4 cut(s) 474, 1227, 1267, 1557
BpmI CTGGAG 3 cut(s) 437, 591, 860
Bpu10I CCTNAGC 1 cut(s) 943
Bpu14I TTCGAA 1 cut(s) 317
BpuEI CTTGAG 2 cut(s) 1116, 1477
BsaBI GATNNNNATC 2 cut(s) 13, 471
BsaI GGTCTC 1 cut(s) 40
BsaJI CCNNGG 3 cut(s) 714, 758, 1255
BsaXI ACNNNNNCTCC 2 cut(s) 410, 440
Bsc4I CCNNNNNNNGG 1 cut(s) 1105
Bse1I ACTGG 2 cut(s) 937, 1159
Bse3DI GCAATG 3 cut(s) 378, 586, 830
Bse8I GATNNNNATC 2 cut(s) 13, 471
BseBI CCWGG 3 cut(s) 716, 759, 1290
BseDI CCNNGG 3 cut(s) 714, 758, 1255
BseGI GGATG 8 cut(s) 14, 14, 121, 472, 898, 1114, 1338, 1520
BseJI GATNNNNATC 2 cut(s) 13, 471
BseLI CCNNNNNNNGG 1 cut(s) 1105
BseMI GCAATG 3 cut(s) 378, 586, 830
BseMII CTCAG 5 cut(s) 51, 661, 957, 1077, 1314
BseNI ACTGG 2 cut(s) 937, 1159
BseRI GAGGAG 1 cut(s) 1103
BseYI CCCAGC 3 cut(s) 26, 232, 801
Bsh1236I CGCG 1 cut(s) 1101
BshFI GGCC 7 cut(s) 226, 526, 763, 1070, 1204, 1227, 1254
BsiHKAI GWGCWC 1 cut(s) 944
BslFI GGGAC 2 cut(s) 215, 1127
BslI CCNNNNNNNGG 1 cut(s) 1105
BsmAI GTCTC 4 cut(s) 40, 650, 878, 1117
BsmFI GGGAC 2 cut(s) 215, 1127
BsmI GAATGC 2 cut(s) 581, 702
BsnI GGCC 7 cut(s) 226, 526, 763, 1070, 1204, 1227, 1254
Bso31I GGTCTC 1 cut(s) 40
Bsp119I TTCGAA 1 cut(s) 317
Bsp1286I GDGCHC 1 cut(s) 944
Bsp1407I TGTACA 1 cut(s) 109
Bsp143I GATC 9 cut(s) 139, 169, 361, 613, 664, 736, 1243, 1381, 1658
BspACI CCGC 3 cut(s) 532, 1050, 1099
BspANI GGCC 7 cut(s) 226, 526, 763, 1070, 1204, 1227, 1254
BspCNI CTCAG 5 cut(s) 50, 660, 956, 1078, 1315
BspFNI CGCG 1 cut(s) 1101
BspLI GGNNCC 3 cut(s) 806, 1228, 1357
BspPI GGATC 1 cut(s) 1666
BspT104I TTCGAA 1 cut(s) 317
BspTI CTTAAG 1 cut(s) 191
BspTNI GGTCTC 1 cut(s) 40
BsrBI CCGCTC 1 cut(s) 532
BsrDI GCAATG 3 cut(s) 378, 586, 830
BsrGI TGTACA 1 cut(s) 109
BsrI ACTGG 2 cut(s) 937, 1159
BssECI CCNNGG 3 cut(s) 714, 758, 1255
BssMI GATC 9 cut(s) 139, 169, 361, 613, 664, 736, 1243, 1381, 1658
BssT1I CCWWGG 1 cut(s) 1255
Bst2UI CCWGG 3 cut(s) 716, 759, 1290
Bst6I CTCTTC 2 cut(s) 1337, 1410
BstAFI CTTAAG 1 cut(s) 191
BstAUI TGTACA 1 cut(s) 109
BstBI TTCGAA 1 cut(s) 317
BstF5I GGATG 8 cut(s) 14, 14, 121, 472, 898, 1114, 1338, 1520
BstFNI CGCG 1 cut(s) 1101
BstHHI GCGC 1 cut(s) 1593
BstKTI GATC 9 cut(s) 142, 172, 364, 616, 667, 739, 1246, 1384, 1661
BstMAI GTCTC 4 cut(s) 40, 650, 878, 1117
BstMBI GATC 9 cut(s) 139, 169, 361, 613, 664, 736, 1243, 1381, 1658
BstMWI GCNNNNNNNGC 7 cut(s) 719, 818, 827, 886, 895, 1005, 1076
BstNI CCWGG 3 cut(s) 716, 759, 1290
BstNSI RCATGY 2 cut(s) 66, 1305
BstPAI GACNNNNGTC 1 cut(s) 63
BstSCI CCNGG 3 cut(s) 714, 757, 1288
BstSFI CTRYAG 1 cut(s) 1116
BstUI CGCG 1 cut(s) 1101
BstV2I GAAGAC 4 cut(s) 474, 1227, 1267, 1557
BstX2I RGATCY 2 cut(s) 1243, 1658
BstXI CCANNNNNNTGG 2 cut(s) 352, 771
BstYI RGATCY 2 cut(s) 1243, 1658
BsuRI GGCC 7 cut(s) 226, 526, 763, 1070, 1204, 1227, 1254
BtgZI GCGATG 1 cut(s) 804
BtsCI GGATG 8 cut(s) 14, 14, 121, 472, 898, 1114, 1338, 1520
BtsI GCAGTG 2 cut(s) 243, 967
BtsIMutI CAGTG 5 cut(s) 243, 944, 967, 1071, 1737
CaiI CAGNNNCTG 2 cut(s) 863, 1295
CfoI GCGC 1 cut(s) 1593
Cfr13I GGNCC 4 cut(s) 761, 805, 1203, 1226
CseI GACGC 1 cut(s) 34
Csp6I GTAC 2 cut(s) 110, 910
CviAII CATG 7 cut(s) 63, 98, 996, 1127, 1302, 1670, 1716
CviQI GTAC 2 cut(s) 110, 910
DpnI GATC 9 cut(s) 141, 171, 363, 615, 666, 738, 1245, 1383, 1660
DpnII GATC 9 cut(s) 139, 169, 361, 613, 664, 736, 1243, 1381, 1658
DraI TTTAAA 1 cut(s) 400
EaeI YGGCCR 3 cut(s) 524, 1068, 1252
Eam1104I CTCTTC 2 cut(s) 1337, 1410
EarI CTCTTC 2 cut(s) 1337, 1410
Eco130I CCWWGG 1 cut(s) 1255
Eco147I AGGCCT 1 cut(s) 226
Eco31I GGTCTC 1 cut(s) 40
Eco32I GATATC 1 cut(s) 633
Eco47I GGWCC 1 cut(s) 805
Eco57I CTGAAG 2 cut(s) 885, 1440
EcoRII CCWGG 3 cut(s) 714, 757, 1288
EcoRV GATATC 1 cut(s) 633
EcoT14I CCWWGG 1 cut(s) 1255
EcoT22I ATGCAT 1 cut(s) 900
ErhI CCWWGG 1 cut(s) 1255
FaeI CATG 7 cut(s) 66, 101, 999, 1130, 1305, 1673, 1719
FalI AAGNNNNNCTT 4 cut(s) 1389, 1421, 1486, 1518
FaqI GGGAC 2 cut(s) 215, 1127
FatI CATG 7 cut(s) 62, 97, 995, 1126, 1301, 1669, 1715
FauI CCCGC 2 cut(s) 1057, 1106
FbaI TGATCA 3 cut(s) 139, 361, 736
FokI GGATG 7 cut(s) 21, 128, 459, 885, 1121, 1345, 1507
FspBI CTAG 5 cut(s) 447, 642, 1187, 1329, 1750
GlaI GCGC 1 cut(s) 1592
GsaI CCCAGC 3 cut(s) 30, 236, 805
GsuI CTGGAG 3 cut(s) 437, 591, 860
HaeIII GGCC 7 cut(s) 226, 526, 763, 1070, 1204, 1227, 1254
HgaI GACGC 1 cut(s) 34
HhaI GCGC 1 cut(s) 1593
Hin1II CATG 7 cut(s) 66, 101, 999, 1130, 1305, 1673, 1719
Hin6I GCGC 1 cut(s) 1591
HinP1I GCGC 1 cut(s) 1591
HinfI GANTC 4 cut(s) 308, 1031, 1093, 1434
HphI GGTGA 7 cut(s) 149, 215, 257, 298, 505, 596, 1403
Hpy166II GTNNAC 2 cut(s) 1413, 1737
Hpy188I TCNGA 9 cut(s) 40, 69, 487, 618, 859, 1087, 1168, 1310, 1725
Hpy188III TCNNGA 4 cut(s) 86, 365, 456, 570
Hpy8I GTNNAC 2 cut(s) 1413, 1737
Hpy99I CGWCG 1 cut(s) 50
HpyAV CCTTC 2 cut(s) 529, 837
HpyCH4IV ACGT 3 cut(s) 1082, 1213, 1644
HpyCH4V TGCA 9 cut(s) 472, 579, 722, 898, 960, 1079, 1301, 1520, 1613
HpyF10VI GCNNNNNNNGC 7 cut(s) 719, 818, 827, 886, 895, 1005, 1076
HpySE526I ACGT 3 cut(s) 1082, 1213, 1644
Hsp92II CATG 7 cut(s) 66, 101, 999, 1130, 1305, 1673, 1719
HspAI GCGC 1 cut(s) 1591
Ksp22I TGATCA 3 cut(s) 139, 361, 736
Kzo9I GATC 9 cut(s) 139, 169, 361, 613, 664, 736, 1243, 1381, 1658
LmnI GCTCC 3 cut(s) 749, 786, 1051
LweI GCATC 6 cut(s) 481, 885, 907, 947, 1066, 1529
MaeI CTAG 5 cut(s) 447, 642, 1187, 1329, 1750
MaeII ACGT 3 cut(s) 1082, 1213, 1644
MaeIII GTNAC 1 cut(s) 1645
MalI GATC 9 cut(s) 141, 171, 363, 615, 666, 738, 1245, 1383, 1660
MbiI CCGCTC 1 cut(s) 532
MboI GATC 9 cut(s) 139, 169, 361, 613, 664, 736, 1243, 1381, 1658
MfeI CAATTG 1 cut(s) 744
MflI RGATCY 2 cut(s) 1243, 1658
MhlI GDGCHC 1 cut(s) 944
MlsI TGGCCA 3 cut(s) 526, 1070, 1254
MluNI TGGCCA 3 cut(s) 526, 1070, 1254
Mox20I TGGCCA 3 cut(s) 526, 1070, 1254
Mph1103I ATGCAT 1 cut(s) 900
MroXI GAANNNNTTC 1 cut(s) 969
MscI TGGCCA 3 cut(s) 526, 1070, 1254
MseI TTAA 7 cut(s) 20, 192, 399, 852, 984, 1179, 1454
MslI CAYNNNNRTG 2 cut(s) 1198, 1525
Msp20I TGGCCA 3 cut(s) 526, 1070, 1254
MspA1I CMGCKG 2 cut(s) 26, 1418
MspCI CTTAAG 1 cut(s) 191
MspR9I CCNGG 3 cut(s) 716, 759, 1290
MunI CAATTG 1 cut(s) 744
Mva1269I GAATGC 2 cut(s) 581, 702
MvaI CCWGG 3 cut(s) 716, 759, 1290
MvnI CGCG 1 cut(s) 1101
MwoI GCNNNNNNNGC 7 cut(s) 719, 818, 827, 886, 895, 1005, 1076
NdeII GATC 9 cut(s) 139, 169, 361, 613, 664, 736, 1243, 1381, 1658
NlaIII CATG 7 cut(s) 66, 101, 999, 1130, 1305, 1673, 1719
NlaIV GGNNCC 3 cut(s) 806, 1228, 1357
NsiI ATGCAT 1 cut(s) 900
NspI RCATGY 2 cut(s) 66, 1305
NspV TTCGAA 1 cut(s) 317
PceI AGGCCT 1 cut(s) 226
PciI ACATGT 1 cut(s) 62
PctI GAATGC 2 cut(s) 581, 702
PdmI GAANNNNTTC 1 cut(s) 969
PfeI GAWTC 4 cut(s) 308, 1031, 1093, 1434
PscI ACATGT 1 cut(s) 62
PshAI GACNNNNGTC 1 cut(s) 63
Psp6I CCWGG 3 cut(s) 714, 757, 1288
PspFI CCCAGC 3 cut(s) 26, 232, 801
PspGI CCWGG 3 cut(s) 714, 757, 1288
PspN4I GGNNCC 3 cut(s) 806, 1228, 1357
PspPI GGNCC 4 cut(s) 761, 805, 1203, 1226
PstNI CAGNNNCTG 2 cut(s) 863, 1295
PsuI RGATCY 2 cut(s) 1243, 1658
PvuII CAGCTG 2 cut(s) 26, 1418
RsaI GTAC 2 cut(s) 111, 911
RsaNI GTAC 2 cut(s) 110, 910
RseI CAYNNNNRTG 2 cut(s) 1198, 1525
SaqAI TTAA 7 cut(s) 20, 192, 399, 852, 984, 1179, 1454
Sau3AI GATC 9 cut(s) 139, 169, 361, 613, 664, 736, 1243, 1381, 1658
Sau96I GGNCC 4 cut(s) 761, 805, 1203, 1226
ScrFI CCNGG 3 cut(s) 716, 759, 1290
SduI GDGCHC 1 cut(s) 944
SfaNI GCATC 6 cut(s) 481, 885, 907, 947, 1066, 1529
SfcI CTRYAG 1 cut(s) 1116
SfuI TTCGAA 1 cut(s) 317
SinI GGWCC 1 cut(s) 805
SmiMI CAYNNNNRTG 2 cut(s) 1198, 1525
SmlI CTYRAG 3 cut(s) 191, 1131, 1492
SmoI CTYRAG 3 cut(s) 191, 1131, 1492
SseBI AGGCCT 1 cut(s) 226
SsiI CCGC 3 cut(s) 532, 1050, 1099
SspI AATATT 2 cut(s) 404, 922
SspMI CTAG 5 cut(s) 447, 642, 1187, 1329, 1750
StuI AGGCCT 1 cut(s) 226
StyD4I CCNGG 3 cut(s) 714, 757, 1288
StyI CCWWGG 1 cut(s) 1255
TaiI ACGT 3 cut(s) 1085, 1216, 1647
TaqI TCGA 6 cut(s) 48, 172, 317, 955, 1384, 1746
TaqII GACCGA 1 cut(s) 22
TatI WGTACW 1 cut(s) 109
TfiI GAWTC 4 cut(s) 308, 1031, 1093, 1434
Tru1I TTAA 7 cut(s) 20, 192, 399, 852, 984, 1179, 1454
Tru9I TTAA 7 cut(s) 20, 192, 399, 852, 984, 1179, 1454
TscAI CASTG 5 cut(s) 243, 944, 967, 1078, 1744
TspDTI ATGAA 3 cut(s) 363, 548, 1349
TspGWI ACGGA 1 cut(s) 465
TspRI CASTG 5 cut(s) 243, 944, 967, 1078, 1744
Vha464I CTTAAG 1 cut(s) 191
VpaK11BI GGWCC 1 cut(s) 805
XapI RAATTY 1 cut(s) 1465
XceI RCATGY 2 cut(s) 66, 1305
XmnI GAANNNNTTC 1 cut(s) 969
XspI CTAG 5 cut(s) 447, 642, 1187, 1329, 1750
Zsp2I ATGCAT 1 cut(s) 900
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.