FvH4_5g02772

AT-rich interactive domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0010472
Physical Location & Seq
Reverse (-)
1675562 .. 1677225
1664 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g02772.t1

Sequence Viewer

Length: 963 bp
ATGGAGGAATGGTCGTTTTTGACAAATGGGTCTGTGTTAGATTTGGCTGAAACTAGTGATGCTGATCCAATTAATGGGGGTAGTGTTGGTAGTGTTATTGAATTTGTAAAAGATGGTGTAGAATGTGTTTTTGGTGATGATGATCGTAAGGGTAATGATATTGATACTGTAAAAGATGTTGTAGGATGTGTTAATGCTGATGATGATGAGTATAAGGTTAGGTTAAGATGTACATTCGATCAGGTTCTATCTGTTTTTCTTAAGGAAATTGGTGATAGAGGTGTTGTTAGACCTGTACCTGCAGTTTTTGGTGATAGGCAGCATGTGGATTTGTTCAAATTGTTCTGTGTTGTGAGAGATGAAGGTGGGTATGATTTGGTTTCGAGGAGGAGGCTTTGGTCTTACGTGTCTAAAGAGTTGGGTTTGGATAATGGGGCAACCGCGGCCTCGGTAAAATTGATCTACTTTAAGTATTTGAATGAGTTGGAGATATGGTTTAGGGAGAGTTGTCCAGAGCAGAAGGACAATGGTGATGGACTGGTTCATTTGGATTCTGACCGAAATGGGAAGTTTGAATATGGTTTATCAGATAACAAAGATGCATGTATAATGCATTCAGGTACTGGAACTGGCAACGGTCATGACGACGAAAAAGCTTGTCATGATGATCAAAATGGTACTTTGGTATTACCCTCCAGTGTCGATAGTAAAGAAAACGAACGTAAAAGAAAGCGACGAGAATCCTTATCAGGAATGCTGAATTGGGTAATCCAGACAGCAACAAAACTTGGTGATGTTTCAATTGGAGAGATACCGGAGCCTGCCAAGTGGAAGAAGCATCAGGGCAACGAGTTCTGGTTCCAGGCAATTAAAGCAAGGGAGGCATTGATGCTAAGAAGAGATCTTAATCCAAAAACTGAAGAGTTACCCCAGCAGGAACTTTACAACATGCCTGTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARID

Protein Analysis

321

Amino Acids

35.99

Weight (kDa)

4.86

Isoelectric Point (pI)

38.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARID PF01388 79 - 161 2.2e-12 ARID/BRIGHT DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010472)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11400 AT4G11400
fragaria_vesca FvH4_5g02760 FvH4_5g02770 FvH4_5g02771 FvH4_5g02772
malus_domestica MD06G1087600.v1.1 MD14G1108400.v1.1
prunus_persica Prupe.5G103500_v2.0.a1
pyrus_communis pycom06g08360 pycom14g10310
rosa_chinensis RchiOBHm_Chr7g0197161
rosa_laevigata RLG00000003956
rosa_multiflora Rmu_ssc0000465.1_g000021
rosa_roxburghii Rroxscaffold_3G00258640
rosa_rugosa Rorug07G0038200
rosa_samantha Rh7AG162900 Rh7BG164900 Rh7CG170900 Rh7DG164300
rosa_wichuraiana Rw7G014220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 28
Acc36I ACCTGC 1 cut(s) 307
AccB7I CCANNNNNTGG 1 cut(s) 74
AccII CGCG 1 cut(s) 443
AciI CCGC 2 cut(s) 441, 443
AclWI GGATC 1 cut(s) 59
AcsI RAATTY 1 cut(s) 101
AcuI CTGAAG 1 cut(s) 939
AfaI GTAC 4 cut(s) 232, 297, 622, 679
AfiI CCNNNNNNNGG 1 cut(s) 74
AflII CTTAAG 1 cut(s) 260
AflIII ACRYGT 1 cut(s) 405
AgsI TTSAA 5 cut(s) 101, 337, 478, 575, 801
AhlI ACTAGT 1 cut(s) 53
AjnI CCWGG 1 cut(s) 861
AjuI GAANNNNNNNTTGG 4 cut(s) 114, 146, 745, 777
AluBI AGCT 1 cut(s) 656
AluI AGCT 1 cut(s) 656
AlwI GGATC 1 cut(s) 59
AlwNI CAGNNNCTG 1 cut(s) 623
AoxI GGCC 1 cut(s) 444
ApeKI GCWGC 1 cut(s) 319
ApoI RAATTY 1 cut(s) 101
AseI ATTAAT 1 cut(s) 72
AsuHPI GGTGA 5 cut(s) 146, 284, 323, 542, 803
BaeI ACNNNNGTAYC 2 cut(s) 669, 702
BbvI GCAGC 1 cut(s) 331
BccI CCATC 2 cut(s) 107, 527
BciT130I CCWGG 1 cut(s) 863
BclI TGATCA 1 cut(s) 667
BcuI ACTAGT 1 cut(s) 53
BfaI CTAG 1 cut(s) 54
BfmI CTRYAG 1 cut(s) 300
BfrI CTTAAG 1 cut(s) 260
BfuAI ACCTGC 1 cut(s) 307
BglII AGATCT 1 cut(s) 901
BisI GCNGC 2 cut(s) 320, 444
BlsI GCNGC 2 cut(s) 321, 445
Bme1390I CCNGG 1 cut(s) 863
BmiI GGNNCC 2 cut(s) 819, 860
BmrFI CCNGG 1 cut(s) 863
BmsI GCATC 4 cut(s) 49, 589, 847, 879
BpmI CTGGAG 1 cut(s) 679
BsaAI YACGTR 1 cut(s) 406
BsaBI GATNNNNATC 3 cut(s) 63, 141, 906
BsaJI CCNNGG 2 cut(s) 441, 447
BsaWI WCCGGW 1 cut(s) 814
BsaXI ACNNNNNCTCC 3 cut(s) 26, 479, 509
Bsc4I CCNNNNNNNGG 1 cut(s) 74
Bse1I ACTGG 4 cut(s) 543, 628, 634, 696
Bse8I GATNNNNATC 3 cut(s) 63, 141, 906
BseBI CCWGG 1 cut(s) 863
BseDI CCNNGG 2 cut(s) 441, 447
BseGI GGATG 1 cut(s) 191
BseJI GATNNNNATC 3 cut(s) 63, 141, 906
BseLI CCNNNNNNNGG 1 cut(s) 74
BseNI ACTGG 4 cut(s) 543, 628, 634, 696
BseRI GAGGAG 2 cut(s) 400, 403
BseXI GCAGC 1 cut(s) 331
BseYI CCCAGC 1 cut(s) 930
Bsh1236I CGCG 1 cut(s) 443
BshFI GGCC 1 cut(s) 446
BsiSI CCGG 1 cut(s) 815
BslI CCNNNNNNNGG 1 cut(s) 74
BsmI GAATGC 2 cut(s) 613, 759
BsnI GGCC 1 cut(s) 446
Bsp1407I TGTACA 1 cut(s) 230
Bsp143I GATC 6 cut(s) 64, 142, 238, 459, 667, 901
BspACI CCGC 2 cut(s) 441, 443
BspANI GGCC 1 cut(s) 446
BspFNI CGCG 1 cut(s) 443
BspHI TCATGA 2 cut(s) 640, 661
BspLI GGNNCC 2 cut(s) 819, 860
BspMAI CTGCAG 1 cut(s) 304
BspMI ACCTGC 1 cut(s) 307
BspPI GGATC 1 cut(s) 59
BspTI CTTAAG 1 cut(s) 260
BsrGI TGTACA 1 cut(s) 230
BsrI ACTGG 4 cut(s) 543, 628, 634, 696
BssECI CCNNGG 2 cut(s) 441, 447
BssMI GATC 6 cut(s) 64, 142, 238, 459, 667, 901
Bst2UI CCWGG 1 cut(s) 863
Bst4CI ACNGT 2 cut(s) 169, 638
Bst6I CTCTTC 2 cut(s) 892, 915
BstAFI CTTAAG 1 cut(s) 260
BstAUI TGTACA 1 cut(s) 230
BstBAI YACGTR 1 cut(s) 406
BstC8I GCNNGC 1 cut(s) 822
BstDEI CTNAG 1 cut(s) 893
BstDSI CCRYGG 1 cut(s) 441
BstF5I GGATG 1 cut(s) 191
BstFNI CGCG 1 cut(s) 443
BstKTI GATC 6 cut(s) 67, 145, 241, 462, 670, 904
BstMBI GATC 6 cut(s) 64, 142, 238, 459, 667, 901
BstMWI GCNNNNNNNGC 3 cut(s) 443, 872, 881
BstNI CCWGG 1 cut(s) 863
BstNSI RCATGY 3 cut(s) 326, 606, 952
BstSCI CCNGG 1 cut(s) 861
BstSFI CTRYAG 1 cut(s) 300
BstUI CGCG 1 cut(s) 443
BstV1I GCAGC 1 cut(s) 331
BstX2I RGATCY 1 cut(s) 901
BstYI RGATCY 1 cut(s) 901
BsuRI GGCC 1 cut(s) 446
BtgI CCRYGG 1 cut(s) 441
BtsCI GGATG 1 cut(s) 191
BtsIMutI CAGTG 1 cut(s) 703
BveI ACCTGC 1 cut(s) 307
Cac8I GCNNGC 1 cut(s) 822
CaiI CAGNNNCTG 1 cut(s) 623
CciI TCATGA 2 cut(s) 640, 661
Cfr42I CCGCGG 1 cut(s) 444
Csp6I GTAC 4 cut(s) 231, 296, 621, 678
CviAII CATG 5 cut(s) 323, 603, 641, 662, 949
CviJI RGCY 5 cut(s) 47, 394, 446, 656, 820
CviKI_1 RGCY 5 cut(s) 47, 394, 446, 656, 820
CviQI GTAC 4 cut(s) 231, 296, 621, 678
DdeI CTNAG 1 cut(s) 893
DpnI GATC 6 cut(s) 66, 144, 240, 461, 669, 903
DpnII GATC 6 cut(s) 64, 142, 238, 459, 667, 901
DrdI GACNNNNNNGTC 1 cut(s) 28
DseDI GACNNNNNNGTC 1 cut(s) 28
Eam1104I CTCTTC 2 cut(s) 892, 915
EarI CTCTTC 2 cut(s) 892, 915
Eco57I CTGAAG 1 cut(s) 939
EcoRII CCWGG 1 cut(s) 861
EcoT22I ATGCAT 2 cut(s) 604, 615
FaeI CATG 5 cut(s) 326, 606, 644, 665, 952
FatI CATG 5 cut(s) 322, 602, 640, 661, 948
FbaI TGATCA 1 cut(s) 667
Fnu4HI GCNGC 2 cut(s) 320, 444
FokI GGATG 1 cut(s) 198
Fsp4HI GCNGC 2 cut(s) 320, 444
FspBI CTAG 1 cut(s) 54
GluI GCNGC 2 cut(s) 320, 444
GsaI CCCAGC 1 cut(s) 934
GsuI CTGGAG 1 cut(s) 679
HaeIII GGCC 1 cut(s) 446
HapII CCGG 1 cut(s) 815
Hin1II CATG 5 cut(s) 326, 606, 644, 665, 952
HindIII AAGCTT 1 cut(s) 654
HinfI GANTC 2 cut(s) 551, 740
HpaII CCGG 1 cut(s) 815
HphI GGTGA 5 cut(s) 146, 284, 323, 542, 803
Hpy188I TCNGA 2 cut(s) 556, 589
Hpy188III TCNNGA 5 cut(s) 512, 641, 662, 750, 772
Hpy99I CGWCG 2 cut(s) 650, 738
HpyAV CCTTC 2 cut(s) 356, 514
HpyCH4III ACNGT 2 cut(s) 169, 638
HpyCH4IV ACGT 2 cut(s) 405, 721
HpyCH4V TGCA 3 cut(s) 302, 602, 613
HpyF10VI GCNNNNNNNGC 3 cut(s) 443, 872, 881
HpyF3I CTNAG 1 cut(s) 893
HpySE526I ACGT 2 cut(s) 405, 721
Hsp92II CATG 5 cut(s) 326, 606, 644, 665, 952
Ksp22I TGATCA 1 cut(s) 667
KspI CCGCGG 1 cut(s) 444
Kzo9I GATC 6 cut(s) 64, 142, 238, 459, 667, 901
LmnI GCTCC 1 cut(s) 817
Lsp1109I GCAGC 1 cut(s) 331
LweI GCATC 4 cut(s) 49, 589, 847, 879
MaeI CTAG 1 cut(s) 54
MaeII ACGT 2 cut(s) 405, 721
MaeIII GTNAC 1 cut(s) 924
MalI GATC 6 cut(s) 66, 144, 240, 461, 669, 903
MboI GATC 6 cut(s) 64, 142, 238, 459, 667, 901
MboII GAAGA 3 cut(s) 844, 909, 932
MfeI CAATTG 1 cut(s) 801
MflI RGATCY 1 cut(s) 901
MluCI AATT 8 cut(s) 69, 101, 267, 338, 455, 760, 801, 867
MmeI TCCRAC 1 cut(s) 465
MnlI CCTC 7 cut(s) 272, 378, 381, 384, 457, 703, 874
Mph1103I ATGCAT 2 cut(s) 604, 615
MseI TTAA 7 cut(s) 72, 192, 224, 261, 468, 870, 906
MspA1I CMGCKG 1 cut(s) 443
MspCI CTTAAG 1 cut(s) 260
MspI CCGG 1 cut(s) 815
MspR9I CCNGG 1 cut(s) 863
MunI CAATTG 1 cut(s) 801
Mva1269I GAATGC 2 cut(s) 613, 759
MvaI CCWGG 1 cut(s) 863
MvnI CGCG 1 cut(s) 443
MwoI GCNNNNNNNGC 3 cut(s) 443, 872, 881
NdeII GATC 6 cut(s) 64, 142, 238, 459, 667, 901
NlaIII CATG 5 cut(s) 326, 606, 644, 665, 952
NlaIV GGNNCC 2 cut(s) 819, 860
NsiI ATGCAT 2 cut(s) 604, 615
NspI RCATGY 3 cut(s) 326, 606, 952
PagI TCATGA 2 cut(s) 640, 661
PcsI WCGNNNNNNNCGW 1 cut(s) 642
PctI GAATGC 2 cut(s) 613, 759
PfeI GAWTC 2 cut(s) 551, 740
PflMI CCANNNNNTGG 1 cut(s) 74
PkrI GCNGC 2 cut(s) 321, 445
Ppu21I YACGTR 1 cut(s) 406
PshBI ATTAAT 1 cut(s) 72
Psp6I CCWGG 1 cut(s) 861
PspFI CCCAGC 1 cut(s) 930
PspGI CCWGG 1 cut(s) 861
PspN4I GGNNCC 2 cut(s) 819, 860
PstI CTGCAG 1 cut(s) 304
PstNI CAGNNNCTG 1 cut(s) 623
PsuI RGATCY 1 cut(s) 901
RsaI GTAC 4 cut(s) 232, 297, 622, 679
RsaNI GTAC 4 cut(s) 231, 296, 621, 678
SacII CCGCGG 1 cut(s) 444
SaqAI TTAA 7 cut(s) 72, 192, 224, 261, 468, 870, 906
SatI GCNGC 2 cut(s) 320, 444
Sau3AI GATC 6 cut(s) 64, 142, 238, 459, 667, 901
ScrFI CCNGG 1 cut(s) 863
SfaNI GCATC 4 cut(s) 49, 589, 847, 879
SfcI CTRYAG 1 cut(s) 300
Sfr303I CCGCGG 1 cut(s) 444
SgrBI CCGCGG 1 cut(s) 444
SmlI CTYRAG 1 cut(s) 260
SmoI CTYRAG 1 cut(s) 260
SpeI ACTAGT 1 cut(s) 53
Sse9I AATT 8 cut(s) 69, 101, 267, 338, 455, 760, 801, 867
SsiI CCGC 2 cut(s) 441, 443
SspMI CTAG 1 cut(s) 54
StyD4I CCNGG 1 cut(s) 861
TaaI ACNGT 2 cut(s) 169, 638
TaiI ACGT 2 cut(s) 408, 724
TaqI TCGA 3 cut(s) 237, 383, 702
TaqII GACCGA 1 cut(s) 573
TasI AATT 8 cut(s) 69, 101, 267, 338, 455, 760, 801, 867
TatI WGTACW 1 cut(s) 230
TauI GCSGC 1 cut(s) 446
TfiI GAWTC 2 cut(s) 551, 740
Tru1I TTAA 7 cut(s) 72, 192, 224, 261, 468, 870, 906
Tru9I TTAA 7 cut(s) 72, 192, 224, 261, 468, 870, 906
TscAI CASTG 1 cut(s) 703
TseI GCWGC 1 cut(s) 319
TspDTI ATGAA 2 cut(s) 375, 533
TspRI CASTG 1 cut(s) 703
Van91I CCANNNNNTGG 1 cut(s) 74
Vha464I CTTAAG 1 cut(s) 260
VspI ATTAAT 1 cut(s) 72
XapI RAATTY 1 cut(s) 101
XceI RCATGY 3 cut(s) 326, 606, 952
XspI CTAG 1 cut(s) 54
Zsp2I ATGCAT 2 cut(s) 604, 615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.