FvH4_5g02771

AT-rich interactive domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0010472
Physical Location & Seq
Reverse (-)
1674080 .. 1674784
705 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g02771.t1

Sequence Viewer

Length: 705 bp
ATGGAAGAACCTAAGGAGCAAGAACCTATGGAAGTTGATTTAGCGTCCCCTCACACATCGGTTATCCCATCTGACCAGGACGAATTCCGTGAAAAGTATGTTTCTATAGGCCCTCTCTTTCAAGCTGATGTTCCTGAATGGACCGGTGAGGCGTCAGAAAGTGATGATAAATGGCTAGGCACAAGGGTATGGCCCTTGGAATGTGAAGAAAACGCTTCCCTTGTTAAGAAGGATACAATTGGCCGAGGAAGACCACATTTTTGTGGCTGTCGGCTTCCAGGTTCTGTTACATGTCTCAGATTTCACATTGCTGAGGCTAGGATGAAATTGAAGAAAGAACTTGGTTCCTTGTTCTATCATTGGAGATTTGATCGTATGGGTGAGGAAATTTGTCTTCAATGGACAGCTGAAGAGGAAAAGAGATTCAAGATCTTGGTACAGTCAAAGTATCCTTTCTTTTGGAATAGCGCATCCAAGTGGTTTCCCAGAAAAACTAGGGAAAACTTGGTGAGCTATTACTTCAATGTGTTTCTTGTTAGGCGAAGAAGTTACCAGAACCGTGCAACTCCAAAAAATATAGATAGCGATGATGACGAAACAGATTTTGGGTCTTTAAGTGAGGGTTTTGGGCATGAGGCAGTCAAAGTTGCAGGCTCCAGTTTTGTTGCTTGTTCCCAGAATAAGCAGTGTGACATCTTGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARID

Protein Analysis

235

Amino Acids

27.15

Weight (kDa)

5.41

Isoelectric Point (pI)

53.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010472)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11400 AT4G11400
fragaria_vesca FvH4_5g02760 FvH4_5g02770 FvH4_5g02771 FvH4_5g02772
malus_domestica MD06G1087600.v1.1 MD14G1108400.v1.1
prunus_persica Prupe.5G103500_v2.0.a1
pyrus_communis pycom06g08360 pycom14g10310
rosa_chinensis RchiOBHm_Chr7g0197161
rosa_laevigata RLG00000003956
rosa_multiflora Rmu_ssc0000465.1_g000021
rosa_roxburghii Rroxscaffold_3G00258640
rosa_rugosa Rorug07G0038200
rosa_samantha Rh7AG162900 Rh7BG164900 Rh7CG170900 Rh7DG164300
rosa_wichuraiana Rw7G014220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 241
AcsI RAATTY 2 cut(s) 83, 387
AcuI CTGAAG 1 cut(s) 429
AcyI GRCGYC 1 cut(s) 152
AfaI GTAC 1 cut(s) 438
AflIII ACRYGT 1 cut(s) 290
AgeI ACCGGT 1 cut(s) 143
AgsI TTSAA 5 cut(s) 122, 331, 398, 427, 523
AjnI CCWGG 2 cut(s) 75, 277
AjuI GAANNNNNNNTTGG 2 cut(s) 588, 620
AluBI AGCT 3 cut(s) 125, 407, 513
AluI AGCT 3 cut(s) 125, 407, 513
Alw26I GTCTC 1 cut(s) 299
AlwNI CAGNNNCTG 1 cut(s) 284
AoxI GGCC 3 cut(s) 109, 191, 241
ApoI RAATTY 2 cut(s) 83, 387
ArsI GACNNNNNNTTYG 2 cut(s) 243, 275
AsiGI ACCGGT 1 cut(s) 143
AspLEI GCGC 1 cut(s) 470
AspS9I GGNCC 3 cut(s) 110, 141, 192
AsuHPI GGTGA 3 cut(s) 158, 392, 520
AvaII GGWCC 1 cut(s) 141
AxyI CCTNAGG 1 cut(s) 12
BbsI GAAGAC 2 cut(s) 256, 386
BbvCI CCTCAGC 1 cut(s) 312
BccI CCATC 1 cut(s) 76
BciT130I CCWGG 2 cut(s) 77, 279
BciVI GTATCC 2 cut(s) 226, 459
BcoDI GTCTC 1 cut(s) 299
BfaI CTAG 3 cut(s) 176, 318, 495
BfmI CTRYAG 1 cut(s) 105
BfuI GTATCC 2 cut(s) 226, 459
BglII AGATCT 1 cut(s) 429
Bme1390I CCNGG 2 cut(s) 77, 279
Bme18I GGWCC 1 cut(s) 141
BmgT120I GGNCC 3 cut(s) 110, 141, 192
BmiI GGNNCC 2 cut(s) 346, 655
BmrFI CCNGG 2 cut(s) 77, 279
BmsI GCATC 1 cut(s) 479
BpiI GAAGAC 2 cut(s) 256, 386
BpmI CTGGAG 1 cut(s) 640
Bpu10I CCTNAGC 1 cut(s) 312
BsaHI GRCGYC 1 cut(s) 152
BsaJI CCNNGG 2 cut(s) 195, 244
BsaWI WCCGGW 1 cut(s) 143
Bse118I RCCGGY 1 cut(s) 143
Bse1I ACTGG 1 cut(s) 657
Bse21I CCTNAGG 1 cut(s) 12
Bse3DI GCAATG 1 cut(s) 306
BseBI CCWGG 2 cut(s) 77, 279
BseDI CCNNGG 2 cut(s) 195, 244
BseGI GGATG 2 cut(s) 327, 470
BseMI GCAATG 1 cut(s) 306
BseMII CTCAG 2 cut(s) 303, 310
BseNI ACTGG 1 cut(s) 657
BshFI GGCC 3 cut(s) 111, 193, 243
BshTI ACCGGT 1 cut(s) 143
BsiSI CCGG 1 cut(s) 144
BslFI GGGAC 1 cut(s) 31
BsmAI GTCTC 1 cut(s) 299
BsmFI GGGAC 1 cut(s) 31
BsnI GGCC 3 cut(s) 111, 193, 243
Bsp143I GATC 2 cut(s) 370, 429
BspANI GGCC 3 cut(s) 111, 193, 243
BspCNI CTCAG 2 cut(s) 304, 309
BspLI GGNNCC 2 cut(s) 346, 655
BsrDI GCAATG 1 cut(s) 306
BsrFI RCCGGY 1 cut(s) 143
BsrI ACTGG 1 cut(s) 657
BssAI RCCGGY 1 cut(s) 143
BssECI CCNNGG 2 cut(s) 195, 244
BssMI GATC 2 cut(s) 370, 429
BssNI GRCGYC 1 cut(s) 152
BssT1I CCWWGG 1 cut(s) 195
Bst2UI CCWGG 2 cut(s) 77, 279
Bst4CI ACNGT 2 cut(s) 441, 560
Bst6I CTCTTC 1 cut(s) 405
BstACI GRCGYC 1 cut(s) 152
BstC8I GCNNGC 1 cut(s) 652
BstDEI CTNAG 3 cut(s) 12, 296, 312
BstF5I GGATG 2 cut(s) 327, 470
BstHHI GCGC 1 cut(s) 470
BstKTI GATC 2 cut(s) 373, 432
BstMAI GTCTC 1 cut(s) 299
BstMBI GATC 2 cut(s) 370, 429
BstNI CCWGG 2 cut(s) 77, 279
BstNSI RCATGY 1 cut(s) 294
BstSCI CCNGG 2 cut(s) 75, 277
BstSFI CTRYAG 1 cut(s) 105
BstV2I GAAGAC 2 cut(s) 256, 386
BstX2I RGATCY 1 cut(s) 429
BstYI RGATCY 1 cut(s) 429
Bsu36I CCTNAGG 1 cut(s) 12
BsuI GTATCC 2 cut(s) 226, 459
BsuRI GGCC 3 cut(s) 111, 193, 243
BtgZI GCGATG 1 cut(s) 600
BtsCI GGATG 2 cut(s) 327, 470
BtsI GCAGTG 1 cut(s) 692
BtsIMutI CAGTG 1 cut(s) 692
Cac8I GCNNGC 1 cut(s) 652
CaiI CAGNNNCTG 1 cut(s) 284
CfoI GCGC 1 cut(s) 470
Cfr10I RCCGGY 1 cut(s) 143
Cfr13I GGNCC 3 cut(s) 110, 141, 192
CseI GACGC 2 cut(s) 33, 141
Csp6I GTAC 1 cut(s) 437
CspAI ACCGGT 1 cut(s) 143
CviAII CATG 2 cut(s) 291, 632
CviQI GTAC 1 cut(s) 437
DdeI CTNAG 3 cut(s) 12, 296, 312
DpnI GATC 2 cut(s) 372, 431
DpnII GATC 2 cut(s) 370, 429
EaeI YGGCCR 1 cut(s) 241
Eam1104I CTCTTC 1 cut(s) 405
EarI CTCTTC 1 cut(s) 405
Eco130I CCWWGG 1 cut(s) 195
Eco47I GGWCC 1 cut(s) 141
Eco57I CTGAAG 1 cut(s) 429
Eco81I CCTNAGG 1 cut(s) 12
EcoO109I RGGNCCY 1 cut(s) 110
EcoRI GAATTC 1 cut(s) 83
EcoRII CCWGG 2 cut(s) 75, 277
EcoT14I CCWWGG 1 cut(s) 195
ErhI CCWWGG 1 cut(s) 195
FaeI CATG 2 cut(s) 294, 635
FaiI YATR 8 cut(s) 29, 99, 107, 190, 292, 377, 578, 633
FaqI GGGAC 1 cut(s) 31
FatI CATG 2 cut(s) 290, 631
FokI GGATG 2 cut(s) 334, 457
FspBI CTAG 3 cut(s) 176, 318, 495
GlaI GCGC 1 cut(s) 469
GsuI CTGGAG 1 cut(s) 640
HaeIII GGCC 3 cut(s) 111, 193, 243
HapII CCGG 1 cut(s) 144
HgaI GACGC 2 cut(s) 33, 141
HhaI GCGC 1 cut(s) 470
Hin1I GRCGYC 1 cut(s) 152
Hin1II CATG 2 cut(s) 294, 635
Hin6I GCGC 1 cut(s) 468
HinP1I GCGC 1 cut(s) 468
HinfI GANTC 1 cut(s) 423
HpaII CCGG 1 cut(s) 144
HphI GGTGA 3 cut(s) 158, 392, 520
Hpy188I TCNGA 3 cut(s) 73, 157, 299
Hpy188III TCNNGA 2 cut(s) 134, 427
HpyAV CCTTC 1 cut(s) 223
HpyCH4III ACNGT 2 cut(s) 441, 560
HpyCH4V TGCA 2 cut(s) 563, 650
HpyF3I CTNAG 3 cut(s) 12, 296, 312
Hsp92I GRCGYC 1 cut(s) 152
Hsp92II CATG 2 cut(s) 294, 635
HspAI GCGC 1 cut(s) 468
Kzo9I GATC 2 cut(s) 370, 429
LmnI GCTCC 2 cut(s) 16, 659
LweI GCATC 1 cut(s) 479
MaeI CTAG 3 cut(s) 176, 318, 495
MaeIII GTNAC 3 cut(s) 286, 548, 689
MalI GATC 2 cut(s) 372, 431
MboI GATC 2 cut(s) 370, 429
MboII GAAGA 7 cut(s) 17, 218, 261, 343, 386, 422, 555
MfeI CAATTG 1 cut(s) 237
MflI RGATCY 1 cut(s) 429
MluCI AATT 4 cut(s) 83, 237, 326, 387
MnlI CCTC 9 cut(s) 60, 123, 142, 239, 307, 376, 406, 613, 628
MseI TTAA 2 cut(s) 225, 614
MslI CAYNNNNRTG 2 cut(s) 261, 475
MspA1I CMGCKG 1 cut(s) 407
MspI CCGG 1 cut(s) 144
MspR9I CCNGG 2 cut(s) 77, 279
MunI CAATTG 1 cut(s) 237
MvaI CCWGG 2 cut(s) 77, 279
NdeII GATC 2 cut(s) 370, 429
NlaIII CATG 2 cut(s) 294, 635
NlaIV GGNNCC 2 cut(s) 346, 655
NmeAIII GCCGAG 1 cut(s) 269
NmuCI GTSAC 1 cut(s) 689
NspI RCATGY 1 cut(s) 294
PciI ACATGT 1 cut(s) 290
PfeI GAWTC 1 cut(s) 423
PinAI ACCGGT 1 cut(s) 143
PscI ACATGT 1 cut(s) 290
Psp6I CCWGG 2 cut(s) 75, 277
PspGI CCWGG 2 cut(s) 75, 277
PspN4I GGNNCC 2 cut(s) 346, 655
PspPI GGNCC 3 cut(s) 110, 141, 192
PstNI CAGNNNCTG 1 cut(s) 284
PsuI RGATCY 1 cut(s) 429
PvuII CAGCTG 1 cut(s) 407
RsaI GTAC 1 cut(s) 438
RsaNI GTAC 1 cut(s) 437
RseI CAYNNNNRTG 2 cut(s) 261, 475
SaqAI TTAA 2 cut(s) 225, 614
Sau3AI GATC 2 cut(s) 370, 429
Sau96I GGNCC 3 cut(s) 110, 141, 192
ScrFI CCNGG 2 cut(s) 77, 279
SetI ASST 6 cut(s) 13, 28, 127, 283, 409, 515
SfaNI GCATC 1 cut(s) 479
SfcI CTRYAG 1 cut(s) 105
SinI GGWCC 1 cut(s) 141
SmiMI CAYNNNNRTG 2 cut(s) 261, 475
Sse9I AATT 4 cut(s) 83, 237, 326, 387
SspMI CTAG 3 cut(s) 176, 318, 495
StyD4I CCNGG 2 cut(s) 75, 277
StyI CCWWGG 1 cut(s) 195
TaaI ACNGT 2 cut(s) 441, 560
TasI AATT 4 cut(s) 83, 237, 326, 387
TfiI GAWTC 1 cut(s) 423
Tru1I TTAA 2 cut(s) 225, 614
Tru9I TTAA 2 cut(s) 225, 614
TscAI CASTG 1 cut(s) 692
TseFI GTSAC 1 cut(s) 689
Tsp45I GTSAC 1 cut(s) 689
TspDTI ATGAA 1 cut(s) 338
TspGWI ACGGA 1 cut(s) 77
TspRI CASTG 1 cut(s) 692
VpaK11BI GGWCC 1 cut(s) 141
XapI RAATTY 2 cut(s) 83, 387
XceI RCATGY 1 cut(s) 294
XspI CTAG 3 cut(s) 176, 318, 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.