Rroxscaffold_3G00258640

AT-rich interactive domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0010472
Physical Location & Seq
Reverse (-)
53098089 .. 53101664
3576 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00258640.1

Sequence Viewer

Length: 1929 bp
ATGGCAGGATGGTCGGTTTCGACAAATGGGTCCGTGTTAGATTTGGCTGAGATTGCTGATGCTAATCCAATTAATGGTGATAGTCTTGGTAGTGGTATTGAATCTGTAAAAGATGGTATAGAATGTGGTGGTGATGATGATGATGATCATAAGGGTACTGATGTTGATACTGTAAAAGATGCTGTAGAATGTGTTGATGATGATTATAGGGGTAGGCAGAGATGTACATTTGATCAGGTTCTATCTGTTTTTCTTAAGGATGTTGGTGATAGAGGTGTTGTTAGGCCTGTGCCTGCAGTTTTTGGTGATAGGCAACATGTGGATTTGTTCAAATTGTTCTGTGTTGTGAGAGATAAAGGTGGGTATGATTTGGTTTCGAAGAAGAGGCTGTGGTCTTTTGTGTCCAAAGAATTGGGTTTGGATGGTGGAGCAACGGCGGCTTCTGTAAAATTGATCTACTTCAAGTATTTGGACGAGTTGGAGATATGGTTTAGGGAGAGTTGTACGAGTAGGAGCTTGGGAAATGGGGAGTCTGGAAGGTATGGGACTTCTCAGTTGTTGTCTTTGGAGCTAGAGAGAGAGTTTAGAGGTTTGTTGTTGGACGGGACAGAGCAGAAGGACAATGGTGATGGACTGGTTCATTTGGAATCTGACCAAAATGGCAAGATTGAATATAGTTTATCAGATACCAAAGATGCATGTACAATGCATTCAGGTACTGGAACTTGCAATGGTCATGACGACGAAAATGTTTGTAATGATGATCAAAATGGTACTTTGATATTACCCTCCAGTGTCGATAATAAAGAAATCGATCGTAAAAGAAAGCGACGAGAATCCTTATCAGGAATGCTGAATTGGGTAATCCAGACAGCAACACAAGTTGGTGATGCTTCAATTGGAGTGATACCAGGGCCAGCTAAGTGGAAGAAGCATGAAGGCAACGAGTTCTGGTTCCAGGCAATTAAAGCAAGGGAGGCATTGATGCTAAGAAGAGATATTACTCCAAAGACTGAAGAATTACTCCAGCAGAAGAAACTAAGGATGCATCCTTTGATGTATGAAGATACTATTGCTGCTGGTCACCATTCCTCAGAGAGGTTAAGATGCAGAGGAAGGATTCCTCAGTCTACTAAATCTCGCTCGTGCACTTGTTGCAATTCTTTGCCGCCAACTCAGAGTAATTCGATAAGTCCTCACGTGGTGTTGCATGACGATTCTAAGGAGCAAGAACCTATGGAAGTTGATTTAGCCTCTCCACATAGATCGGTTATCCCATCTGACGATGATGAATCCCGTGAAAAGTATGTTTCTGTGGGCCCTCTCTCTCAAGCTGATGTTCCTGAATGGACTGATGTGGCCTCAGAAAGTGATAGTAAATGGCTAGGCACAAGGGTATGGCCCTTGCAATGTGAAGAAGACAATTCCCTTGTTGAAACAGATATCATTGGCCGAGGAAGACCAGATTCCTGTGGCTGTCAGCTTCCAGGTTCTGTTACATGTCATAGATTTCACATTGCTGAGGCTAGGATGAAACTGAAGAAAGAACTCGGTTCCTTGTTCTATCACTGGAGATTTGATCATATGGGAGAGGAAATTTCTCTTCAGTGGACAGCGGAAGAGGAAAAGAGATTCAAGACCTTGGTACAGTCAAAGTATCCTTTCTTTTGGAATAGTGCATCCAAGTGGTTTCCCAGAAAAACTAGGGAAAACTTGGTGAGCTATTACTTCAATGTGTTTCTTGTTAAGCGAAGAAGTTATCAGAACCGTGTAACTCCTAAAAATATAGATAGCGATGATGACGAAACAGATTTTGGGTCTTTAAGTGAGGGTTTTGGGCACGAGGCAGTCAAAGTTTCAGGCTCCAATTTTCTGGCTTGTTCCCAGAATAAGCAGTGTGACGACTTGGATGATAAAAATACTGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARID

Protein Analysis

642

Amino Acids

72.09

Weight (kDa)

5.18

Isoelectric Point (pI)

46.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARID PF01388 77 - 159 9.8e-12 ARID/BRIGHT DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010472)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11400 AT4G11400
fragaria_vesca FvH4_5g02760 FvH4_5g02770 FvH4_5g02771 FvH4_5g02772
malus_domestica MD06G1087600.v1.1 MD14G1108400.v1.1
prunus_persica Prupe.5G103500_v2.0.a1
pyrus_communis pycom06g08360 pycom14g10310
rosa_chinensis RchiOBHm_Chr7g0197161
rosa_laevigata RLG00000003956
rosa_multiflora Rmu_ssc0000465.1_g000021
rosa_roxburghii Rroxscaffold_3G00258640
rosa_rugosa Rorug07G0038200
rosa_samantha Rh7AG162900 Rh7BG164900 Rh7CG170900 Rh7DG164300
rosa_wichuraiana Rw7G014220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 28
AccB7I CCANNNNNTGG 1 cut(s) 74
AccI GTMKAC 1 cut(s) 1130
AciI CCGC 3 cut(s) 437, 1169, 1616
AcoI YGGCCR 1 cut(s) 1450
AcsI RAATTY 1 cut(s) 1596
AcuI CTGAAG 3 cut(s) 1035, 1559, 1589
AcvI CACGTG 1 cut(s) 1201
AdeI CACNNNGTG 1 cut(s) 1204
AfaI GTAC 7 cut(s) 157, 226, 505, 703, 718, 775, 1647
AfiI CCNNNNNNNGG 2 cut(s) 74, 1098
AflII CTTAAG 1 cut(s) 254
AflIII ACRYGT 2 cut(s) 316, 1499
AgsI TTSAA 8 cut(s) 101, 331, 463, 671, 897, 1436, 1636, 1732
AjnI CCWGG 3 cut(s) 910, 957, 1486
AjuI GAANNNNNNNTTGG 4 cut(s) 841, 873, 1797, 1829
AluBI AGCT 6 cut(s) 516, 571, 920, 1334, 1483, 1722
AluI AGCT 6 cut(s) 516, 571, 920, 1334, 1483, 1722
Alw21I GWGCWC 1 cut(s) 1151
Alw44I GTGCAC 1 cut(s) 1147
AlwNI CAGNNNCTG 2 cut(s) 719, 1493
AoxI GGCC 6 cut(s) 284, 914, 1318, 1359, 1400, 1450
ApaI GGGCCC 1 cut(s) 1322
ApaLI GTGCAC 1 cut(s) 1147
ApeKI GCWGC 1 cut(s) 1076
ApoI RAATTY 1 cut(s) 1596
AseI ATTAAT 1 cut(s) 72
AspS9I GGNCC 5 cut(s) 30, 914, 1318, 1319, 1401
AsuHPI GGTGA 8 cut(s) 89, 143, 278, 317, 638, 899, 1076, 1729
AsuII TTCGAA 1 cut(s) 377
AvaII GGWCC 1 cut(s) 30
BaeGI GKGCMC 3 cut(s) 1151, 1322, 1842
BaeI ACNNNNGTAYC 2 cut(s) 147, 180
BanII GRGCYC 1 cut(s) 1322
BarI GAAGNNNNNNTAC 2 cut(s) 985, 1017
BauI CACGAG 2 cut(s) 1144, 1841
BbrPI CACGTG 1 cut(s) 1201
BbsI GAAGAC 2 cut(s) 1425, 1465
Bbv12I GWGCWC 1 cut(s) 1151
BbvCI CCTCAGC 1 cut(s) 1521
BbvI GCAGC 1 cut(s) 1063
BccI CCATC 5 cut(s) 3, 107, 416, 623, 1285
BceAI ACGGC 1 cut(s) 450
BcgI CGANNNNNNTGC 1 cut(s) 28
BciT130I CCWGG 3 cut(s) 912, 959, 1488
BciVI GTATCC 1 cut(s) 1668
BclI TGATCA 4 cut(s) 145, 232, 763, 1579
BfaI CTAG 4 cut(s) 572, 1385, 1527, 1704
BfmI CTRYAG 2 cut(s) 183, 294
BfrI CTTAAG 1 cut(s) 254
BfuI GTATCC 1 cut(s) 1668
BisI GCNGC 3 cut(s) 438, 1077, 1169
BlsI GCNGC 3 cut(s) 439, 1078, 1170
Bme1390I CCNGG 3 cut(s) 912, 959, 1488
Bme18I GGWCC 1 cut(s) 30
BmgT120I GGNCC 5 cut(s) 30, 914, 1318, 1319, 1401
BmiI GGNNCC 5 cut(s) 31, 956, 1320, 1555, 1864
BmrFI CCNGG 3 cut(s) 912, 959, 1488
BmsI GCATC 9 cut(s) 49, 169, 685, 880, 975, 1035, 1057, 1097, 1688
BpiI GAAGAC 2 cut(s) 1425, 1465
BpmI CTGGAG 3 cut(s) 775, 1010, 1591
Bpu10I CCTNAGC 1 cut(s) 1521
Bpu14I TTCGAA 1 cut(s) 377
BpuEI CTTGAG 1 cut(s) 1314
Bsa29I ATCGAT 1 cut(s) 813
BsaAI YACGTR 1 cut(s) 1201
BsaBI GATNNNNATC 2 cut(s) 63, 144
BsaJI CCNNGG 3 cut(s) 911, 1453, 1641
BsaXI ACNNNNNCTCC 2 cut(s) 473, 503
Bsc4I CCNNNNNNNGG 2 cut(s) 74, 1098
Bse1I ACTGG 4 cut(s) 639, 724, 792, 1574
Bse3DI GCAATG 3 cut(s) 736, 1415, 1515
Bse8I GATNNNNATC 2 cut(s) 63, 144
BseBI CCWGG 3 cut(s) 912, 959, 1488
BseCI ATCGAT 1 cut(s) 813
BseDI CCNNGG 3 cut(s) 911, 1453, 1641
BseGI GGATG 8 cut(s) 14, 265, 427, 1048, 1050, 1536, 1679, 1915
BseJI GATNNNNATC 2 cut(s) 63, 144
BseLI CCNNNNNNNGG 2 cut(s) 74, 1098
BseMI GCAATG 3 cut(s) 736, 1415, 1515
BseMII CTCAG 7 cut(s) 39, 566, 1107, 1139, 1190, 1377, 1512
BseNI ACTGG 4 cut(s) 639, 724, 792, 1574
BseSI GKGCMC 3 cut(s) 1151, 1322, 1842
BseXI GCAGC 1 cut(s) 1063
Bsh1285I CGRYCG 1 cut(s) 817
BshFI GGCC 6 cut(s) 286, 916, 1320, 1361, 1402, 1452
BshVI ATCGAT 1 cut(s) 813
BsiEI CGRYCG 1 cut(s) 817
BsiHKAI GWGCWC 1 cut(s) 1151
BslFI GGGAC 2 cut(s) 559, 619
BslI CCNNNNNNNGG 2 cut(s) 74, 1098
BsmFI GGGAC 2 cut(s) 559, 619
BsmI GAATGC 2 cut(s) 709, 855
BsnI GGCC 6 cut(s) 286, 916, 1320, 1361, 1402, 1452
Bsp119I TTCGAA 1 cut(s) 377
Bsp120I GGGCCC 1 cut(s) 1318
Bsp1286I GDGCHC 3 cut(s) 1151, 1322, 1842
Bsp1407I TGTACA 2 cut(s) 224, 701
Bsp143I GATC 7 cut(s) 145, 232, 453, 763, 814, 1265, 1579
BspACI CCGC 3 cut(s) 437, 1169, 1616
BspANI GGCC 6 cut(s) 286, 916, 1320, 1361, 1402, 1452
BspCNI CTCAG 7 cut(s) 40, 565, 1106, 1138, 1189, 1376, 1513
BspDI ATCGAT 1 cut(s) 813
BspHI TCATGA 1 cut(s) 736
BspLI GGNNCC 5 cut(s) 31, 956, 1320, 1555, 1864
BspMAI CTGCAG 1 cut(s) 298
BspT104I TTCGAA 1 cut(s) 377
BspTI CTTAAG 1 cut(s) 254
BsrDI GCAATG 3 cut(s) 736, 1415, 1515
BsrGI TGTACA 2 cut(s) 224, 701
BsrI ACTGG 4 cut(s) 639, 724, 792, 1574
BssECI CCNNGG 3 cut(s) 911, 1453, 1641
BssMI GATC 7 cut(s) 145, 232, 453, 763, 814, 1265, 1579
BssSI CACGAG 2 cut(s) 1144, 1841
BssT1I CCWWGG 1 cut(s) 1641
Bst2BI CACGAG 2 cut(s) 1144, 1841
Bst2UI CCWGG 3 cut(s) 912, 959, 1488
Bst4CI ACNGT 4 cut(s) 172, 1650, 1769, 1924
Bst6I CTCTTC 4 cut(s) 377, 988, 1608, 1614
BstAFI CTTAAG 1 cut(s) 254
BstAPI GCANNNNNTGC 1 cut(s) 1155
BstAUI TGTACA 2 cut(s) 224, 701
BstBAI YACGTR 1 cut(s) 1201
BstBI TTCGAA 1 cut(s) 377
BstC8I GCNNGC 2 cut(s) 294, 918
BstEII GGTNACC 1 cut(s) 1082
BstENI CCTNNNNNAGG 1 cut(s) 1096
BstF5I GGATG 8 cut(s) 14, 265, 427, 1048, 1050, 1536, 1679, 1915
BstKTI GATC 7 cut(s) 148, 235, 456, 766, 817, 1268, 1582
BstMBI GATC 7 cut(s) 145, 232, 453, 763, 814, 1265, 1579
BstMCI CGRYCG 1 cut(s) 817
BstMWI GCNNNNNNNGC 5 cut(s) 53, 437, 968, 977, 1155
BstNI CCWGG 3 cut(s) 912, 959, 1488
BstNSI RCATGY 3 cut(s) 320, 702, 1503
BstPI GGTNACC 1 cut(s) 1082
BstSCI CCNGG 3 cut(s) 910, 957, 1486
BstSFI CTRYAG 2 cut(s) 183, 294
BstSLI GKGCMC 3 cut(s) 1151, 1322, 1842
BstV1I GCAGC 1 cut(s) 1063
BstV2I GAAGAC 2 cut(s) 1425, 1465
BstXI CCANNNNNNTGG 3 cut(s) 412, 924, 1873
Bsu15I ATCGAT 1 cut(s) 813
BsuI GTATCC 1 cut(s) 1668
BsuRI GGCC 6 cut(s) 286, 916, 1320, 1361, 1402, 1452
BsuTUI ATCGAT 1 cut(s) 813
BtgZI GCGATG 1 cut(s) 1809
BtsCI GGATG 8 cut(s) 14, 265, 427, 1048, 1050, 1536, 1679, 1915
BtsI GCAGTG 1 cut(s) 1901
BtsIMutI CAGTG 4 cut(s) 799, 1567, 1613, 1901
Cac8I GCNNGC 2 cut(s) 294, 918
CaiI CAGNNNCTG 2 cut(s) 719, 1493
CciI TCATGA 1 cut(s) 736
Cfr13I GGNCC 5 cut(s) 30, 914, 1318, 1319, 1401
ClaI ATCGAT 1 cut(s) 813
Csp6I GTAC 7 cut(s) 156, 225, 504, 702, 717, 774, 1646
CviAII CATG 6 cut(s) 317, 699, 737, 935, 1211, 1500
CviQI GTAC 7 cut(s) 156, 225, 504, 702, 717, 774, 1646
DpnI GATC 7 cut(s) 147, 234, 455, 765, 816, 1267, 1581
DpnII GATC 7 cut(s) 145, 232, 453, 763, 814, 1265, 1579
DraIII CACNNNGTG 1 cut(s) 1204
DrdI GACNNNNNNGTC 1 cut(s) 28
DseDI GACNNNNNNGTC 1 cut(s) 28
EaeI YGGCCR 1 cut(s) 1450
Eam1104I CTCTTC 4 cut(s) 377, 988, 1608, 1614
EarI CTCTTC 4 cut(s) 377, 988, 1608, 1614
Eco130I CCWWGG 1 cut(s) 1641
Eco147I AGGCCT 1 cut(s) 286
Eco24I GRGCYC 1 cut(s) 1322
Eco32I GATATC 1 cut(s) 1444
Eco47I GGWCC 1 cut(s) 30
Eco57I CTGAAG 3 cut(s) 1035, 1559, 1589
Eco72I CACGTG 1 cut(s) 1201
Eco91I GGTNACC 1 cut(s) 1082
EcoNI CCTNNNNNAGG 1 cut(s) 1096
EcoO109I RGGNCCY 1 cut(s) 1319
EcoO65I GGTNACC 1 cut(s) 1082
EcoRII CCWGG 3 cut(s) 910, 957, 1486
EcoRV GATATC 1 cut(s) 1444
EcoT14I CCWWGG 1 cut(s) 1641
EcoT22I ATGCAT 3 cut(s) 700, 711, 1050
EcoT38I GRGCYC 1 cut(s) 1322
ErhI CCWWGG 1 cut(s) 1641
FaeI CATG 6 cut(s) 320, 702, 740, 938, 1214, 1503
FaqI GGGAC 2 cut(s) 559, 619
FatI CATG 6 cut(s) 316, 698, 736, 934, 1210, 1499
FauNDI CATATG 1 cut(s) 1584
FbaI TGATCA 4 cut(s) 145, 232, 763, 1579
FblI GTMKAC 1 cut(s) 1130
Fnu4HI GCNGC 3 cut(s) 438, 1077, 1169
FokI GGATG 8 cut(s) 21, 272, 434, 1035, 1057, 1543, 1666, 1922
FriOI GRGCYC 1 cut(s) 1322
Fsp4HI GCNGC 3 cut(s) 438, 1077, 1169
FspBI CTAG 4 cut(s) 572, 1385, 1527, 1704
GluI GCNGC 3 cut(s) 438, 1077, 1169
GsuI CTGGAG 3 cut(s) 775, 1010, 1591
HaeIII GGCC 6 cut(s) 286, 916, 1320, 1361, 1402, 1452
Hin1II CATG 6 cut(s) 320, 702, 740, 938, 1214, 1503
HinfI GANTC 9 cut(s) 101, 530, 647, 836, 1120, 1217, 1292, 1466, 1632
HphI GGTGA 8 cut(s) 89, 143, 278, 317, 638, 899, 1076, 1729
Hpy166II GTNNAC 3 cut(s) 1131, 1149, 1611
Hpy188I TCNGA 7 cut(s) 652, 685, 1096, 1179, 1282, 1366, 1764
Hpy188III TCNNGA 6 cut(s) 534, 737, 846, 868, 1343, 1636
Hpy8I GTNNAC 3 cut(s) 1131, 1149, 1611
Hpy99I CGWCG 2 cut(s) 746, 834
HpyAV CCTTC 4 cut(s) 531, 610, 932, 1110
HpyCH4III ACNGT 4 cut(s) 172, 1650, 1769, 1924
HpyCH4IV ACGT 1 cut(s) 1200
HpyF10VI GCNNNNNNNGC 5 cut(s) 53, 437, 968, 977, 1155
HpySE526I ACGT 1 cut(s) 1200
Hsp92II CATG 6 cut(s) 320, 702, 740, 938, 1214, 1503
Ksp22I TGATCA 4 cut(s) 145, 232, 763, 1579
Kzo9I GATC 7 cut(s) 145, 232, 453, 763, 814, 1265, 1579
LmnI GCTCC 5 cut(s) 428, 513, 568, 1225, 1868
Lsp1109I GCAGC 1 cut(s) 1063
LweI GCATC 9 cut(s) 49, 169, 685, 880, 975, 1035, 1057, 1097, 1688
MaeI CTAG 4 cut(s) 572, 1385, 1527, 1704
MaeII ACGT 1 cut(s) 1200
MaeIII GTNAC 4 cut(s) 1082, 1495, 1771, 1898
MalI GATC 7 cut(s) 147, 234, 455, 765, 816, 1267, 1581
MboI GATC 7 cut(s) 145, 232, 453, 763, 814, 1265, 1579
MfeI CAATTG 1 cut(s) 897
MhlI GDGCHC 3 cut(s) 1151, 1322, 1842
MlyI GAGTC 1 cut(s) 539
MmeI TCCRAC 2 cut(s) 459, 579
Mph1103I ATGCAT 3 cut(s) 700, 711, 1050
MseI TTAA 6 cut(s) 72, 255, 966, 1103, 1746, 1823
MslI CAYNNNNRTG 1 cut(s) 1684
MspA1I CMGCKG 1 cut(s) 1616
MspCI CTTAAG 1 cut(s) 254
MspR9I CCNGG 3 cut(s) 912, 959, 1488
MunI CAATTG 1 cut(s) 897
Mva1269I GAATGC 2 cut(s) 709, 855
MvaI CCWGG 3 cut(s) 912, 959, 1488
MwoI GCNNNNNNNGC 5 cut(s) 53, 437, 968, 977, 1155
NdeI CATATG 1 cut(s) 1584
NdeII GATC 7 cut(s) 145, 232, 453, 763, 814, 1265, 1579
NlaIII CATG 6 cut(s) 320, 702, 740, 938, 1214, 1503
NlaIV GGNNCC 5 cut(s) 31, 956, 1320, 1555, 1864
NmeAIII GCCGAG 1 cut(s) 1478
NmuCI GTSAC 2 cut(s) 1082, 1898
NsiI ATGCAT 3 cut(s) 700, 711, 1050
NspI RCATGY 3 cut(s) 320, 702, 1503
NspV TTCGAA 1 cut(s) 377
PagI TCATGA 1 cut(s) 736
PceI AGGCCT 1 cut(s) 286
PciI ACATGT 2 cut(s) 316, 1499
PctI GAATGC 2 cut(s) 709, 855
PfeI GAWTC 8 cut(s) 101, 647, 836, 1120, 1217, 1292, 1466, 1632
PflMI CCANNNNNTGG 1 cut(s) 74
PkrI GCNGC 3 cut(s) 439, 1078, 1170
Ple19I CGATCG 1 cut(s) 817
PleI GAGTC 1 cut(s) 538
PmaCI CACGTG 1 cut(s) 1201
PmlI CACGTG 1 cut(s) 1201
PpsI GAGTC 1 cut(s) 538
Ppu21I YACGTR 1 cut(s) 1201
PscI ACATGT 2 cut(s) 316, 1499
PshBI ATTAAT 1 cut(s) 72
Psp6I CCWGG 3 cut(s) 910, 957, 1486
PspCI CACGTG 1 cut(s) 1201
PspEI GGTNACC 1 cut(s) 1082
PspGI CCWGG 3 cut(s) 910, 957, 1486
PspN4I GGNNCC 5 cut(s) 31, 956, 1320, 1555, 1864
PspOMI GGGCCC 1 cut(s) 1318
PspPI GGNCC 5 cut(s) 30, 914, 1318, 1319, 1401
PstI CTGCAG 1 cut(s) 298
PstNI CAGNNNCTG 2 cut(s) 719, 1493
PvuI CGATCG 1 cut(s) 817
RsaI GTAC 7 cut(s) 157, 226, 505, 703, 718, 775, 1647
RsaNI GTAC 7 cut(s) 156, 225, 504, 702, 717, 774, 1646
RseI CAYNNNNRTG 1 cut(s) 1684
SaqAI TTAA 6 cut(s) 72, 255, 966, 1103, 1746, 1823
SatI GCNGC 3 cut(s) 438, 1077, 1169
Sau3AI GATC 7 cut(s) 145, 232, 453, 763, 814, 1265, 1579
Sau96I GGNCC 5 cut(s) 30, 914, 1318, 1319, 1401
SchI GAGTC 1 cut(s) 539
ScrFI CCNGG 3 cut(s) 912, 959, 1488
SduI GDGCHC 3 cut(s) 1151, 1322, 1842
SfaNI GCATC 9 cut(s) 49, 169, 685, 880, 975, 1035, 1057, 1097, 1688
SfcI CTRYAG 2 cut(s) 183, 294
SfuI TTCGAA 1 cut(s) 377
SinI GGWCC 1 cut(s) 30
SmiMI CAYNNNNRTG 1 cut(s) 1684
SmlI CTYRAG 2 cut(s) 254, 1329
SmoI CTYRAG 2 cut(s) 254, 1329
SseBI AGGCCT 1 cut(s) 286
SsiI CCGC 3 cut(s) 437, 1169, 1616
SspMI CTAG 4 cut(s) 572, 1385, 1527, 1704
StuI AGGCCT 1 cut(s) 286
StyD4I CCNGG 3 cut(s) 910, 957, 1486
StyI CCWWGG 1 cut(s) 1641
TaaI ACNGT 4 cut(s) 172, 1650, 1769, 1924
TaiI ACGT 1 cut(s) 1203
TaqI TCGA 5 cut(s) 20, 377, 798, 813, 1187
TatI WGTACW 2 cut(s) 224, 701
TauI GCSGC 2 cut(s) 440, 1171
TfiI GAWTC 8 cut(s) 101, 647, 836, 1120, 1217, 1292, 1466, 1632
Tru1I TTAA 6 cut(s) 72, 255, 966, 1103, 1746, 1823
Tru9I TTAA 6 cut(s) 72, 255, 966, 1103, 1746, 1823
TscAI CASTG 4 cut(s) 799, 1574, 1613, 1901
TseFI GTSAC 2 cut(s) 1082, 1898
TseI GCWGC 1 cut(s) 1076
Tsp45I GTSAC 2 cut(s) 1082, 1898
TspDTI ATGAA 5 cut(s) 629, 951, 1077, 1305, 1547
TspGWI ACGGA 1 cut(s) 22
TspRI CASTG 4 cut(s) 799, 1574, 1613, 1901
Van91I CCANNNNNTGG 1 cut(s) 74
Vha464I CTTAAG 1 cut(s) 254
VneI GTGCAC 1 cut(s) 1147
VpaK11BI GGWCC 1 cut(s) 30
VspI ATTAAT 1 cut(s) 72
XagI CCTNNNNNAGG 1 cut(s) 1096
XapI RAATTY 1 cut(s) 1596
XceI RCATGY 3 cut(s) 320, 702, 1503
XmiI GTMKAC 1 cut(s) 1130
XspI CTAG 4 cut(s) 572, 1385, 1527, 1704
Zsp2I ATGCAT 3 cut(s) 700, 711, 1050
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.