AT4G12240

zinc finger (C2H2 type) family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0006197
Physical Location & Seq
Forward (+)
7287803 .. 7289225
1423 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G12240.1

Sequence Viewer

Length: 1095 bp
ATGTTTTCAAGATTTGTCCTAAAAAGTTGGAGACCTAAAACCCAAACCACATCTCTCAATTCAATCAAAGGTTTTAGCTTTAGCTCTAGCTCGATAAACCCTAAACCCAAAATCCGAGTAGGGGTTTGGTGGGATCTAGACAACAAACCACCAGCCTCTTTCCCGCCTTACGACGCCGCCGTCAAGCTCCGAACCGCCGCGTCGTCTTTCGGAACCGTGAAGCTAATGATGGCGTATGCGAATCGTCACGCCTTTAGCTACGTTCCTTTAGAAGTTCGAGAACAGAGGAAAGATAGGAAATTGCTAAACAAATTAGAGAACAAAGGTTTAGTTAAACCACCGGAGCCTTACTTCTGCGGTGTTTGTGACCGGAGATTCTACACTAACGAGAAGCTAATTAATCATTTCAAGCAGATTCATGAGACAGAGAATCAGAAACGTATGAGACAGATTGAATCTTCGAAAGGACATCGAAGAGTGAGACTTGTGGCTAAGTATTCGATGAAGATTGAGAAGTATAAAAGAGCGGCGAGGAATGTTTTGACTCCGAAGGAAGGTTACGGTTTAGCTGATGAGCTGAAACGAGCTGGTTTTTGGGTGAAGATGGTTAGTGATAAGCCAGATGCTGCTGATAAGGCGTTGAAGGAACATTTGGTTGAAGTGATGGATAAGAGAGAAGTGGAGTGTGTTGTTTTAGTGTCTGATGATTCTGATTTTGCGGGGATTTTGTGGGAAGCTAAGGAGAGGTGTTTGAGGACGGTTGTGATTGGAGATTCGAACGAAGGTGCGCTGAAGCGAGTAGCGGATGTTGCGTATTCGTGGAAGGAAGTGACGATGGGGAAGGCGAAGAAGGAAGTTGAGAAAGTTGTGGGGAAGTGGAAGGATAGAGATGTGTTGAAGAAGTTGGAGTGGACTTATGATCCTGCTTTGGAGAAAGAGAGAGGTGGTTCTTGCGGTGTTTGGGATTACGAGTTTGATTATGATGATGAGATTGAGAATGGAACAGAGGTGGAACCTGTGGAGATTGGTGATGGTGTTGACTGGTGGAAGATCGATACTGAAGATGGTGTTGGATCTTCAAGAACTTGTCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NYN

Protein Analysis

364

Amino Acids

41.91

Weight (kDa)

9.08

Isoelectric Point (pI)

36.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NYN PF01936 188 - 271 1e-07 NYN domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 179
AccBSI CCGCTC 1 cut(s) 527
AccII CGCG 1 cut(s) 200
AciI CCGC 9 cut(s) 164, 177, 195, 198, 357, 527, 719, 803, 954
AclWI GGATC 3 cut(s) 141, 914, 1081
AcuI CTGAAG 2 cut(s) 812, 1080
AcyI GRCGYC 1 cut(s) 174
AfiI CCNNNNNNNGG 2 cut(s) 121, 554
AgsI TTSAA 8 cut(s) 9, 63, 409, 455, 643, 659, 898, 1080
AjuI GAANNNNNNNTTGG 4 cut(s) 635, 667, 1053, 1085
Alw26I GTCTC 4 cut(s) 25, 416, 439, 475
AlwI GGATC 3 cut(s) 141, 914, 1081
AlwNI CAGNNNCTG 1 cut(s) 626
ApeKI GCWGC 1 cut(s) 626
AseI ATTAAT 1 cut(s) 399
AspLEI GCGC 1 cut(s) 790
AsuHPI GGTGA 2 cut(s) 610, 1040
AsuII TTCGAA 2 cut(s) 461, 776
BarI GAAGNNNNNNTAC 2 cut(s) 542, 574
BbvI GCAGC 1 cut(s) 613
BccI CCATC 6 cut(s) 223, 598, 658, 829, 1025, 1058
BceAI ACGGC 1 cut(s) 164
BcoDI GTCTC 4 cut(s) 25, 416, 439, 475
BfaI CTAG 2 cut(s) 87, 137
BisI GCNGC 4 cut(s) 177, 198, 528, 627
BlsI GCNGC 4 cut(s) 178, 199, 529, 628
BmiI GGNNCC 3 cut(s) 214, 345, 1014
BmsI GCATC 1 cut(s) 613
Bpu10I CCTNAGC 1 cut(s) 738
Bpu14I TTCGAA 2 cut(s) 461, 776
Bsa29I ATCGAT 1 cut(s) 1053
BsaHI GRCGYC 1 cut(s) 174
BsaI GGTCTC 1 cut(s) 25
BsaWI WCCGGW 2 cut(s) 340, 369
Bsc4I CCNNNNNNNGG 2 cut(s) 121, 554
Bse1I ACTGG 1 cut(s) 1046
BseCI ATCGAT 1 cut(s) 1053
BseGI GGATG 1 cut(s) 811
BseLI CCNNNNNNNGG 2 cut(s) 121, 554
BseNI ACTGG 1 cut(s) 1046
BseXI GCAGC 1 cut(s) 613
Bsh1236I CGCG 1 cut(s) 200
BshVI ATCGAT 1 cut(s) 1053
BsiSI CCGG 2 cut(s) 341, 370
BslI CCNNNNNNNGG 2 cut(s) 121, 554
BsmAI GTCTC 4 cut(s) 25, 416, 439, 475
Bso31I GGTCTC 1 cut(s) 25
Bsp119I TTCGAA 2 cut(s) 461, 776
Bsp143I GATC 4 cut(s) 133, 919, 1050, 1073
BspACI CCGC 9 cut(s) 164, 177, 195, 198, 357, 527, 719, 803, 954
BspDI ATCGAT 1 cut(s) 1053
BspFNI CGCG 1 cut(s) 200
BspHI TCATGA 1 cut(s) 418
BspLI GGNNCC 3 cut(s) 214, 345, 1014
BspPI GGATC 3 cut(s) 141, 914, 1081
BspT104I TTCGAA 2 cut(s) 461, 776
BspTNI GGTCTC 1 cut(s) 25
BsrBI CCGCTC 1 cut(s) 527
BsrI ACTGG 1 cut(s) 1046
BssMI GATC 4 cut(s) 133, 919, 1050, 1073
BssNI GRCGYC 1 cut(s) 174
Bst4CI ACNGT 3 cut(s) 217, 563, 760
Bst6I CTCTTC 1 cut(s) 469
BstACI GRCGYC 1 cut(s) 174
BstBI TTCGAA 2 cut(s) 461, 776
BstDEI CTNAG 2 cut(s) 492, 738
BstF5I GGATG 1 cut(s) 811
BstFNI CGCG 1 cut(s) 200
BstHHI GCGC 1 cut(s) 790
BstKTI GATC 4 cut(s) 136, 922, 1053, 1076
BstMAI GTCTC 4 cut(s) 25, 416, 439, 475
BstMBI GATC 4 cut(s) 133, 919, 1050, 1073
BstMWI GCNNNNNNNGC 2 cut(s) 635, 809
BstUI CGCG 1 cut(s) 200
BstV1I GCAGC 1 cut(s) 613
BstX2I RGATCY 2 cut(s) 133, 1073
BstYI RGATCY 2 cut(s) 133, 1073
Bsu15I ATCGAT 1 cut(s) 1053
BsuTUI ATCGAT 1 cut(s) 1053
BtsCI GGATG 1 cut(s) 811
CaiI CAGNNNCTG 1 cut(s) 626
CciI TCATGA 1 cut(s) 418
CfoI GCGC 1 cut(s) 790
ClaI ATCGAT 1 cut(s) 1053
CseI GACGC 2 cut(s) 182, 189
CviAII CATG 1 cut(s) 419
DdeI CTNAG 2 cut(s) 492, 738
DpnI GATC 4 cut(s) 135, 921, 1052, 1075
DpnII GATC 4 cut(s) 133, 919, 1050, 1073
DrdI GACNNNNNNGTC 1 cut(s) 179
DseDI GACNNNNNNGTC 1 cut(s) 179
Eam1104I CTCTTC 1 cut(s) 469
EarI CTCTTC 1 cut(s) 469
Eco31I GGTCTC 1 cut(s) 25
Eco57I CTGAAG 2 cut(s) 812, 1080
FaeI CATG 1 cut(s) 422
FaiI YATR 6 cut(s) 237, 420, 443, 519, 918, 981
FatI CATG 1 cut(s) 418
FauI CCCGC 2 cut(s) 171, 712
Fnu4HI GCNGC 4 cut(s) 177, 198, 528, 627
FokI GGATG 1 cut(s) 818
Fsp4HI GCNGC 4 cut(s) 177, 198, 528, 627
FspBI CTAG 2 cut(s) 87, 137
GlaI GCGC 1 cut(s) 789
GluI GCNGC 4 cut(s) 177, 198, 528, 627
HapII CCGG 2 cut(s) 341, 370
HgaI GACGC 2 cut(s) 182, 189
HhaI GCGC 1 cut(s) 790
Hin1I GRCGYC 1 cut(s) 174
Hin1II CATG 1 cut(s) 422
Hin6I GCGC 1 cut(s) 788
HinP1I GCGC 1 cut(s) 788
HincII GTYRAC 1 cut(s) 1039
HindII GTYRAC 1 cut(s) 1039
HinfI GANTC 8 cut(s) 241, 375, 415, 430, 455, 544, 707, 773
HpaII CCGG 2 cut(s) 341, 370
HphI GGTGA 2 cut(s) 610, 1040
Hpy166II GTNNAC 2 cut(s) 912, 1039
Hpy188I TCNGA 7 cut(s) 116, 191, 212, 435, 549, 703, 712
Hpy188III TCNNGA 5 cut(s) 9, 137, 278, 419, 1080
Hpy8I GTNNAC 2 cut(s) 912, 1039
Hpy99I CGWCG 2 cut(s) 176, 205
HpyAV CCTTC 8 cut(s) 544, 548, 637, 776, 817, 835, 844, 874
HpyCH4III ACNGT 3 cut(s) 217, 563, 760
HpyCH4IV ACGT 2 cut(s) 261, 439
HpyF10VI GCNNNNNNNGC 2 cut(s) 635, 809
HpyF3I CTNAG 2 cut(s) 492, 738
HpySE526I ACGT 2 cut(s) 261, 439
Hsp92I GRCGYC 1 cut(s) 174
Hsp92II CATG 1 cut(s) 422
HspAI GCGC 1 cut(s) 788
Kzo9I GATC 4 cut(s) 133, 919, 1050, 1073
LmnI GCTCC 2 cut(s) 192, 343
LpnPI CCDG 8 cut(s) 165, 354, 383, 573, 633, 936, 1027, 1029
Lsp1109I GCAGC 1 cut(s) 613
LweI GCATC 1 cut(s) 613
MaeI CTAG 2 cut(s) 87, 137
MaeII ACGT 2 cut(s) 261, 439
MaeIII GTNAC 4 cut(s) 245, 365, 557, 829
MalI GATC 4 cut(s) 135, 921, 1052, 1075
MbiI CCGCTC 1 cut(s) 527
MboI GATC 4 cut(s) 133, 919, 1050, 1073
MboII GAAGA 9 cut(s) 450, 486, 517, 613, 859, 910, 1060, 1068, 1073
MflI RGATCY 2 cut(s) 133, 1073
MluCI AATT 4 cut(s) 58, 299, 311, 396
MlyI GAGTC 1 cut(s) 538
MmeI TCCRAC 3 cut(s) 8, 885, 1051
MnlI CCTC 7 cut(s) 166, 279, 525, 738, 747, 935, 1000
MseI TTAA 2 cut(s) 333, 399
MspI CCGG 2 cut(s) 341, 370
MvnI CGCG 1 cut(s) 200
MwoI GCNNNNNNNGC 2 cut(s) 635, 809
NdeII GATC 4 cut(s) 133, 919, 1050, 1073
NlaIII CATG 1 cut(s) 422
NlaIV GGNNCC 3 cut(s) 214, 345, 1014
NmuCI GTSAC 3 cut(s) 245, 365, 829
NspV TTCGAA 2 cut(s) 461, 776
PagI TCATGA 1 cut(s) 418
PcsI WCGNNNNNNNCGW 1 cut(s) 177
PfeI GAWTC 7 cut(s) 241, 375, 415, 430, 455, 707, 773
PkrI GCNGC 4 cut(s) 178, 199, 529, 628
PleI GAGTC 1 cut(s) 538
PpsI GAGTC 1 cut(s) 538
PshBI ATTAAT 1 cut(s) 399
PspN4I GGNNCC 3 cut(s) 214, 345, 1014
PstNI CAGNNNCTG 1 cut(s) 626
PsuI RGATCY 2 cut(s) 133, 1073
SaqAI TTAA 2 cut(s) 333, 399
SatI GCNGC 4 cut(s) 177, 198, 528, 627
Sau3AI GATC 4 cut(s) 133, 919, 1050, 1073
SchI GAGTC 1 cut(s) 538
SfaNI GCATC 1 cut(s) 613
SfuI TTCGAA 2 cut(s) 461, 776
Sse9I AATT 4 cut(s) 58, 299, 311, 396
SsiI CCGC 9 cut(s) 164, 177, 195, 198, 357, 527, 719, 803, 954
SspMI CTAG 2 cut(s) 87, 137
TaaI ACNGT 3 cut(s) 217, 563, 760
TaiI ACGT 2 cut(s) 264, 442
TaqI TCGA 8 cut(s) 92, 277, 461, 472, 500, 776, 1053, 1090
TasI AATT 4 cut(s) 58, 299, 311, 396
TauI GCSGC 3 cut(s) 179, 200, 530
TfiI GAWTC 7 cut(s) 241, 375, 415, 430, 455, 707, 773
Tru1I TTAA 2 cut(s) 333, 399
Tru9I TTAA 2 cut(s) 333, 399
TseFI GTSAC 3 cut(s) 245, 365, 829
TseI GCWGC 1 cut(s) 626
Tsp45I GTSAC 3 cut(s) 245, 365, 829
TspDTI ATGAA 2 cut(s) 407, 518
VspI ATTAAT 1 cut(s) 399
XbaI TCTAGA 1 cut(s) 136
XspI CTAG 2 cut(s) 87, 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.