MD09G1283800.v1.1

NYN domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0006197
Physical Location & Seq
Forward (+)
36171641 .. 36174123
2483 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1283800.v1.1.491

Sequence Viewer

Length: 1209 bp
ATGCTTACACATCTTAAATTTCGCCACATTCTCTGTACAGTTCAATCCAGCAGGCCAGAAACCCTAATCCCTTTTACCCAGTTCAATAGATATTGTCATTTTCAATCTACAACGGGTTTCTATTCTTCGAATCCTTCCTCGTGTTTGGCACCAAAGAAAATTTCTGAAAACAGTGTTGCGATTTTCTGGGATTTGGATACCAGACCACCCAAATCAGTCTCACCGTACAAAGCCGCCGTCAAGCTCAAGACTGCGGCTTCATCTTTCGGGATTGTCCGGCATATGATAGCGTATGCGAATCGAAATGCGTTGAACTATGTTCCACAAGTTATTTGGGAAAGGAAAGAGAGGAATAGGGTTGTGATTAGGGATGGTGAGTCGAATATATGTCCGGTTTGTGGGAGAAGATTTTATACCAATGAGAAGCTTATGAATCATTTTAAGCAGATTCATGAGACGGAACATGTGAAGAGGTTGAATCAGATTGAGTCTGCTAGAGGGAGTAGGAGAGTGAAGTTGGTGGGTAAGTATTCCATGAAGATGGAGAAGTATAAGAAAGCTGCAAGGGATGTTTTGACAACCAAGGTGGGGCGTGGTTTAGCGGATGAGGTGGAGCAGGCAGGGTTTTGGATTCGGAGTGTGTTGGATAAGCCACAGGGGGTGAAAGTCGCATTGAGAAATCACATTGTGGACATGATGGATCACAGGAGAGTTGACTGTTTGATGCTTGTGTCGGATGATTCGCATTTTGTGGATGTTGTGATGGAGGCAAAGTTGAGATGTCTGAAGACGGTTGTTGTGGGGGATTTTGGCGATGGGGCTCTGAAGAGGGCTGCGGATTCTGGTTTTTCTTGGAATGAAATTTTGATTGGGAAGGCTGAAAAGGAGGCAGTGTCAGTTGTGGGGAAATGGAAAGACCGTGATGTGTTGAAGAGATTGGAGTGGACGTACAAGCCAGATGGGGATCAAAGTTTGCATAAATGGAATGATGAGGTTTATGGTGAAAGCGAGAGATTGGAGTGGACAGACAAGTCAGATGGGGATCAAAGTTTGCATAAATGGAATGATGAGGTTTATGGTGAAAGCGAGGATGACGATATCGAAGGTTTTGTTGGTGAGGCGAATCACAATTTGGGGAAGGACGATGCTTGCAACTGGTGGGAGCTTGACTCTGATTCCGAGGCCATTTCATTACAATCATCCCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NYN

Protein Analysis

403

Amino Acids

46.11

Weight (kDa)

8.02

Isoelectric Point (pI)

47.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1030
AccB1I GGYRCC 1 cut(s) 148
AciI CCGC 4 cut(s) 234, 254, 602, 836
AclWI GGATC 3 cut(s) 708, 972, 1050
AcsI RAATTY 3 cut(s) 17, 159, 861
AcuI CTGAAG 2 cut(s) 806, 845
AdeI CACNNNGTG 1 cut(s) 688
AfaI GTAC 3 cut(s) 37, 227, 950
AfiI CCNNNNNNNGG 2 cut(s) 398, 588
AflIII ACRYGT 1 cut(s) 463
AgsI TTSAA 6 cut(s) 44, 85, 104, 313, 478, 931
AjuI GAANNNNNNNTTGG 8 cut(s) 145, 177, 852, 884, 1095, 1115, 1127, 1147
AluBI AGCT 4 cut(s) 244, 427, 560, 1165
AluI AGCT 4 cut(s) 244, 427, 560, 1165
Alw26I GTCTC 2 cut(s) 223, 449
AlwI GGATC 3 cut(s) 708, 972, 1050
AoxI GGCC 2 cut(s) 53, 1182
ApeKI GCWGC 2 cut(s) 560, 833
ApoI RAATTY 3 cut(s) 17, 159, 861
ArsI GACNNNNNNTTYG 2 cut(s) 222, 254
AsuHPI GGTGA 6 cut(s) 213, 386, 673, 1013, 1091, 1127
AsuII TTCGAA 1 cut(s) 128
BanI GGYRCC 1 cut(s) 148
BanII GRGCYC 1 cut(s) 823
BarI GAAGNNNNNNTAC 2 cut(s) 397, 429
BauI CACGAG 1 cut(s) 139
BbsI GAAGAC 1 cut(s) 794
BbvI GCAGC 2 cut(s) 547, 820
BccI CCATC 7 cut(s) 365, 535, 691, 757, 809, 953, 1031
BceAI ACGGC 1 cut(s) 221
BciVI GTATCC 1 cut(s) 190
BcoDI GTCTC 2 cut(s) 223, 449
BfaI CTAG 1 cut(s) 495
BfuI GTATCC 1 cut(s) 190
BisI GCNGC 4 cut(s) 234, 255, 561, 834
BlsI GCNGC 4 cut(s) 235, 256, 562, 835
BmiI GGNNCC 1 cut(s) 150
BmrI ACTGGG 1 cut(s) 73
BmsI GCATC 2 cut(s) 714, 1135
BmuI ACTGGG 1 cut(s) 73
BpiI GAAGAC 1 cut(s) 794
BplI GAGNNNNNCTC 2 cut(s) 1154, 1186
Bpu14I TTCGAA 1 cut(s) 128
BpuEI CTTGAG 1 cut(s) 230
BsaBI GATNNNNATC 2 cut(s) 963, 1041
BsaJI CCNNGG 2 cut(s) 582, 1179
BsaWI WCCGGW 1 cut(s) 391
BsaXI ACNNNNNCTCC 6 cut(s) 758, 788, 878, 908, 932, 962
Bsc4I CCNNNNNNNGG 2 cut(s) 398, 588
Bse1I ACTGG 2 cut(s) 79, 1160
Bse8I GATNNNNATC 2 cut(s) 963, 1041
BseDI CCNNGG 2 cut(s) 582, 1179
BseGI GGATG 7 cut(s) 376, 574, 610, 742, 760, 1096, 1199
BseJI GATNNNNATC 2 cut(s) 963, 1041
BseLI CCNNNNNNNGG 2 cut(s) 398, 588
BseNI ACTGG 2 cut(s) 79, 1160
BseXI GCAGC 2 cut(s) 547, 820
BshFI GGCC 2 cut(s) 55, 1184
BshNI GGYRCC 1 cut(s) 148
BsiSI CCGG 2 cut(s) 277, 392
BslI CCNNNNNNNGG 2 cut(s) 398, 588
BsmAI GTCTC 2 cut(s) 223, 449
BsmBI CGTCTC 1 cut(s) 449
BsnI GGCC 2 cut(s) 55, 1184
Bsp119I TTCGAA 1 cut(s) 128
Bsp1286I GDGCHC 1 cut(s) 823
Bsp1407I TGTACA 1 cut(s) 35
Bsp143I GATC 3 cut(s) 700, 964, 1042
BspACI CCGC 4 cut(s) 234, 254, 602, 836
BspANI GGCC 2 cut(s) 55, 1184
BspHI TCATGA 1 cut(s) 451
BspLI GGNNCC 1 cut(s) 150
BspPI GGATC 3 cut(s) 708, 972, 1050
BspT104I TTCGAA 1 cut(s) 128
BspT107I GGYRCC 1 cut(s) 148
BsrGI TGTACA 1 cut(s) 35
BsrI ACTGG 2 cut(s) 79, 1160
BssECI CCNNGG 2 cut(s) 582, 1179
BssMI GATC 3 cut(s) 700, 964, 1042
BssSI CACGAG 1 cut(s) 139
BssT1I CCWWGG 1 cut(s) 582
Bst2BI CACGAG 1 cut(s) 139
Bst4CI ACNGT 6 cut(s) 40, 173, 225, 719, 793, 920
Bst6I CTCTTC 3 cut(s) 464, 821, 926
BstAUI TGTACA 1 cut(s) 35
BstBI TTCGAA 1 cut(s) 128
BstC8I GCNNGC 3 cut(s) 53, 618, 1150
BstF5I GGATG 7 cut(s) 376, 574, 610, 742, 760, 1096, 1199
BstKTI GATC 3 cut(s) 703, 967, 1045
BstMAI GTCTC 2 cut(s) 223, 449
BstMBI GATC 3 cut(s) 700, 964, 1042
BstNSI RCATGY 1 cut(s) 467
BstV1I GCAGC 2 cut(s) 547, 820
BstV2I GAAGAC 1 cut(s) 794
BstXI CCANNNNNNTGG 1 cut(s) 541
BsuI GTATCC 1 cut(s) 190
BsuRI GGCC 2 cut(s) 55, 1184
BtgZI GCGATG 1 cut(s) 828
BtsCI GGATG 7 cut(s) 376, 574, 610, 742, 760, 1096, 1199
BtsI GCAGTG 1 cut(s) 897
BtsIMutI CAGTG 2 cut(s) 178, 897
Cac8I GCNNGC 3 cut(s) 53, 618, 1150
CciI TCATGA 1 cut(s) 451
Csp6I GTAC 3 cut(s) 36, 226, 949
CspCI CAANNNNNGTGG 2 cut(s) 567, 602
CviAII CATG 4 cut(s) 452, 464, 535, 694
CviQI GTAC 3 cut(s) 36, 226, 949
DpnI GATC 3 cut(s) 702, 966, 1044
DpnII GATC 3 cut(s) 700, 964, 1042
DraIII CACNNNGTG 1 cut(s) 688
DrdI GACNNNNNNGTC 1 cut(s) 1030
DseDI GACNNNNNNGTC 1 cut(s) 1030
Eam1104I CTCTTC 3 cut(s) 464, 821, 926
EarI CTCTTC 3 cut(s) 464, 821, 926
Eco130I CCWWGG 1 cut(s) 582
Eco24I GRGCYC 1 cut(s) 823
Eco32I GATATC 1 cut(s) 1099
Eco57I CTGAAG 2 cut(s) 806, 845
EcoRV GATATC 1 cut(s) 1099
EcoT14I CCWWGG 1 cut(s) 582
EcoT38I GRGCYC 1 cut(s) 823
ErhI CCWWGG 1 cut(s) 582
Esp3I CGTCTC 1 cut(s) 449
FaeI CATG 4 cut(s) 455, 467, 538, 697
FatI CATG 4 cut(s) 451, 463, 534, 693
FauNDI CATATG 1 cut(s) 282
Fnu4HI GCNGC 4 cut(s) 234, 255, 561, 834
FokI GGATG 7 cut(s) 383, 581, 617, 749, 767, 1103, 1186
FriOI GRGCYC 1 cut(s) 823
Fsp4HI GCNGC 4 cut(s) 234, 255, 561, 834
FspBI CTAG 1 cut(s) 495
GluI GCNGC 4 cut(s) 234, 255, 561, 834
HaeIII GGCC 2 cut(s) 55, 1184
HapII CCGG 2 cut(s) 277, 392
Hin1II CATG 4 cut(s) 455, 467, 538, 697
HincII GTYRAC 1 cut(s) 715
HindII GTYRAC 1 cut(s) 715
HindIII AAGCTT 1 cut(s) 425
HpaII CCGG 2 cut(s) 277, 392
HphI GGTGA 6 cut(s) 213, 386, 673, 1013, 1091, 1127
Hpy166II GTNNAC 4 cut(s) 691, 715, 945, 1023
Hpy188I TCNGA 9 cut(s) 166, 483, 636, 736, 786, 825, 1036, 1174, 1180
Hpy188III TCNNGA 4 cut(s) 247, 268, 452, 1203
Hpy8I GTNNAC 4 cut(s) 691, 715, 945, 1023
HpyAV CCTTC 4 cut(s) 144, 868, 1097, 1132
HpyCH4III ACNGT 6 cut(s) 40, 173, 225, 719, 793, 920
HpyCH4IV ACGT 1 cut(s) 947
HpyCH4V TGCA 4 cut(s) 563, 976, 1054, 1152
HpySE526I ACGT 1 cut(s) 947
Hsp92II CATG 4 cut(s) 455, 467, 538, 697
Kzo9I GATC 3 cut(s) 700, 964, 1042
LmnI GCTCC 2 cut(s) 613, 1162
Lsp1109I GCAGC 2 cut(s) 547, 820
LweI GCATC 2 cut(s) 714, 1135
MaeI CTAG 1 cut(s) 495
MaeII ACGT 1 cut(s) 947
MalI GATC 3 cut(s) 702, 966, 1044
MboI GATC 3 cut(s) 700, 964, 1042
MboII GAAGA 7 cut(s) 117, 417, 481, 550, 799, 838, 943
MhlI GDGCHC 1 cut(s) 823
MluCI AATT 4 cut(s) 17, 159, 861, 1129
MlyI GAGTC 3 cut(s) 386, 497, 1163
MmeI TCCRAC 2 cut(s) 624, 714
MseI TTAA 2 cut(s) 15, 441
MslI CAYNNNNRTG 2 cut(s) 539, 1204
MspI CCGG 2 cut(s) 277, 392
NdeI CATATG 1 cut(s) 282
NdeII GATC 3 cut(s) 700, 964, 1042
NlaIII CATG 4 cut(s) 455, 467, 538, 697
NlaIV GGNNCC 1 cut(s) 150
NspI RCATGY 1 cut(s) 467
NspV TTCGAA 1 cut(s) 128
PagI TCATGA 1 cut(s) 451
PciI ACATGT 1 cut(s) 463
PkrI GCNGC 4 cut(s) 235, 256, 562, 835
PleI GAGTC 3 cut(s) 385, 496, 1163
PpsI GAGTC 3 cut(s) 385, 496, 1163
PscI ACATGT 1 cut(s) 463
PspN4I GGNNCC 1 cut(s) 150
RsaI GTAC 3 cut(s) 37, 227, 950
RsaNI GTAC 3 cut(s) 36, 226, 949
RseI CAYNNNNRTG 2 cut(s) 539, 1204
SaqAI TTAA 2 cut(s) 15, 441
SatI GCNGC 4 cut(s) 234, 255, 561, 834
Sau3AI GATC 3 cut(s) 700, 964, 1042
SchI GAGTC 3 cut(s) 386, 497, 1163
SduI GDGCHC 1 cut(s) 823
SfaNI GCATC 2 cut(s) 714, 1135
SfuI TTCGAA 1 cut(s) 128
SmiMI CAYNNNNRTG 2 cut(s) 539, 1204
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
Sse9I AATT 4 cut(s) 17, 159, 861, 1129
SsiI CCGC 4 cut(s) 234, 254, 602, 836
SspMI CTAG 1 cut(s) 495
StyI CCWWGG 1 cut(s) 582
TaaI ACNGT 6 cut(s) 40, 173, 225, 719, 793, 920
TaiI ACGT 1 cut(s) 950
TaqI TCGA 4 cut(s) 128, 301, 380, 1101
TasI AATT 4 cut(s) 17, 159, 861, 1129
TatI WGTACW 1 cut(s) 35
TauI GCSGC 2 cut(s) 236, 257
Tru1I TTAA 2 cut(s) 15, 441
Tru9I TTAA 2 cut(s) 15, 441
TscAI CASTG 2 cut(s) 178, 897
TseI GCWGC 2 cut(s) 560, 833
TspDTI ATGAA 6 cut(s) 249, 440, 446, 551, 873, 1179
TspGWI ACGGA 1 cut(s) 473
TspRI CASTG 2 cut(s) 178, 897
XapI RAATTY 3 cut(s) 17, 159, 861
XceI RCATGY 1 cut(s) 467
XcmI CCANNNNNNNNNTGG 1 cut(s) 330
XspI CTAG 1 cut(s) 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.