Prupe.2G054400_v2.0.a1

NYN domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0006197
Physical Location & Seq
Reverse (-)
6398661 .. 6399594
934 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G054400.1

Sequence Viewer

Length: 855 bp
ATGCTTAAACATCTCAAATTTCACCACATTTTCTGTACAGTTCAATCCAAAAGGTCAGAAACCCTAAACCCATTTACCCTGTTGATTAGATATTGCCATTTCCAATCAGAACCGGGTTTTAATTCTTCGAGCCCAACATCGTGTTTGCCACCCGAAAAAATTCCAGAAATTGCGATTTTCTGGGATTTGGATACCAAACCACCCAAATCAGTCTCGCCCTACGAAGCTGCCGTTAAGCTCAAGACGGCAGCTTCGTCTTTCAGGCTTGTTCGGCATATGATAGCATATGCAAACCGCCATGCACTTGATTATGTTCCACAGGTTGTTAGGGAAAGGAAAGAGAGGAACAGGGTTGTGATTAGGGATGGTGAACTGAACGTTTGTAGGGTTTGCGGGAGGAGATTTTATACTAATGAGAAGCTTTTGAACCACTTTAAGATTCATGAAAAAGAGCATATGAAGAGGTTGAGCCAGATTGAGTCTGCTAGAGGGAGCAGGAGGGTGAAGCTGGTTGGTAAGTATTCAATGAAGATGGAAAAGTATAAGAATGCTGCAAGGGATGTTTTGACACCCAAGGCAGGGAGGGGTTTGGCGGATGAGAGGGCGGATGCTGCATTGAGGAATCACATTGTGGATATGATGGATCACAGGAGAGCTGAGTGTTTGATGCTTGTGTCGGATGATTTGGATTTCGTGGATGTTGTGATGGAGGCCAAGCTGAGATGCCTCAAGACGGTGAAGGTTGCGGATTCGGGGTTTTCTTGGAACGAAATTCTAATTGGGAAGGCGAAGAAGGAGGCAGTGTCGGTTGTGGGGAAATGGAAAGACCGTGATGTGTTGAAGAGATTGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NYN

Protein Analysis

285

Amino Acids

32.82

Weight (kDa)

9.72

Isoelectric Point (pI)

47.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 295, 393, 593, 605, 746
AclI AACGTT 1 cut(s) 378
AclWI GGATC 1 cut(s) 651
AcsI RAATTY 3 cut(s) 17, 159, 771
AdeI CACNNNGTG 1 cut(s) 631
AfaI GTAC 1 cut(s) 37
AfiI CCNNNNNNNGG 3 cut(s) 578, 579, 733
AgsI TTSAA 4 cut(s) 44, 427, 525, 841
AjuI GAANNNNNNNTTGG 2 cut(s) 762, 794
AluBI AGCT 7 cut(s) 227, 238, 251, 421, 508, 656, 718
AluI AGCT 7 cut(s) 227, 238, 251, 421, 508, 656, 718
Alw26I GTCTC 1 cut(s) 217
AlwI GGATC 1 cut(s) 651
AoxI GGCC 1 cut(s) 711
ApeKI GCWGC 4 cut(s) 227, 248, 551, 611
ApoI RAATTY 3 cut(s) 17, 159, 771
ArsI GACNNNNNNTTYG 2 cut(s) 235, 267
Asp700I GAANNNNTTC 1 cut(s) 159
AsuC2I CCSGG 1 cut(s) 114
AsuHPI GGTGA 4 cut(s) 14, 380, 514, 748
BanII GRGCYC 1 cut(s) 134
BbvI GCAGC 4 cut(s) 214, 260, 538, 598
BccI CCATC 4 cut(s) 359, 526, 634, 700
BceAI ACGGC 2 cut(s) 215, 261
BciVI GTATCC 1 cut(s) 184
BcnI CCSGG 1 cut(s) 114
BcoDI GTCTC 1 cut(s) 217
BfaI CTAG 1 cut(s) 486
BfuI GTATCC 1 cut(s) 184
BisI GCNGC 4 cut(s) 228, 249, 552, 612
BlsI GCNGC 4 cut(s) 229, 250, 553, 613
Bme1390I CCNGG 1 cut(s) 114
BmrFI CCNGG 1 cut(s) 114
BmsI GCATC 3 cut(s) 598, 657, 713
BpuEI CTTGAG 2 cut(s) 224, 713
BpuMI CCSGG 1 cut(s) 114
BsaJI CCNNGG 1 cut(s) 573
BsaXI ACNNNNNCTCC 2 cut(s) 788, 818
Bsc4I CCNNNNNNNGG 3 cut(s) 578, 579, 733
BseDI CCNNGG 1 cut(s) 573
BseGI GGATG 6 cut(s) 370, 565, 601, 613, 685, 703
BseLI CCNNNNNNNGG 3 cut(s) 578, 579, 733
BseMII CTCAG 2 cut(s) 648, 710
BseRI GAGGAG 1 cut(s) 412
BseXI GCAGC 4 cut(s) 214, 260, 538, 598
BshFI GGCC 1 cut(s) 713
BsiSI CCGG 1 cut(s) 113
BslI CCNNNNNNNGG 3 cut(s) 578, 579, 733
BsmAI GTCTC 1 cut(s) 217
BsmI GAATGC 1 cut(s) 553
BsnI GGCC 1 cut(s) 713
Bsp1286I GDGCHC 1 cut(s) 134
Bsp1407I TGTACA 1 cut(s) 35
Bsp143I GATC 1 cut(s) 643
BspACI CCGC 5 cut(s) 295, 393, 593, 605, 746
BspANI GGCC 1 cut(s) 713
BspCNI CTCAG 2 cut(s) 649, 711
BspHI TCATGA 1 cut(s) 442
BspPI GGATC 1 cut(s) 651
BsrGI TGTACA 1 cut(s) 35
BssECI CCNNGG 1 cut(s) 573
BssMI GATC 1 cut(s) 643
BssT1I CCWWGG 1 cut(s) 573
Bst4CI ACNGT 3 cut(s) 40, 736, 830
Bst6I CTCTTC 2 cut(s) 455, 836
BstAUI TGTACA 1 cut(s) 35
BstDEI CTNAG 2 cut(s) 657, 719
BstF5I GGATG 6 cut(s) 370, 565, 601, 613, 685, 703
BstKTI GATC 1 cut(s) 646
BstMAI GTCTC 1 cut(s) 217
BstMBI GATC 1 cut(s) 643
BstMWI GCNNNNNNNGC 2 cut(s) 271, 611
BstSCI CCNGG 1 cut(s) 112
BstV1I GCAGC 4 cut(s) 214, 260, 538, 598
BsuI GTATCC 1 cut(s) 184
BsuRI GGCC 1 cut(s) 713
BtsCI GGATG 6 cut(s) 370, 565, 601, 613, 685, 703
BtsI GCAGTG 1 cut(s) 807
BtsIMutI CAGTG 1 cut(s) 807
CciI TCATGA 1 cut(s) 442
Csp6I GTAC 1 cut(s) 36
CviAII CATG 2 cut(s) 299, 443
CviQI GTAC 1 cut(s) 36
DdeI CTNAG 2 cut(s) 657, 719
DpnI GATC 1 cut(s) 645
DpnII GATC 1 cut(s) 643
DraIII CACNNNGTG 1 cut(s) 631
Eam1104I CTCTTC 2 cut(s) 455, 836
EarI CTCTTC 2 cut(s) 455, 836
EciI GGCGGA 2 cut(s) 608, 620
Eco130I CCWWGG 1 cut(s) 573
Eco24I GRGCYC 1 cut(s) 134
EcoT14I CCWWGG 1 cut(s) 573
EcoT38I GRGCYC 1 cut(s) 134
ErhI CCWWGG 1 cut(s) 573
FaeI CATG 2 cut(s) 302, 446
FatI CATG 2 cut(s) 298, 442
FauI CCCGC 1 cut(s) 386
FauNDI CATATG 3 cut(s) 276, 286, 456
Fnu4HI GCNGC 4 cut(s) 228, 249, 552, 612
FokI GGATG 6 cut(s) 377, 572, 608, 620, 692, 710
FriOI GRGCYC 1 cut(s) 134
Fsp4HI GCNGC 4 cut(s) 228, 249, 552, 612
FspBI CTAG 1 cut(s) 486
GluI GCNGC 4 cut(s) 228, 249, 552, 612
HaeIII GGCC 1 cut(s) 713
HapII CCGG 1 cut(s) 113
Hin1II CATG 2 cut(s) 302, 446
HindIII AAGCTT 1 cut(s) 419
HinfI GANTC 4 cut(s) 439, 479, 622, 749
HpaII CCGG 1 cut(s) 113
HphI GGTGA 4 cut(s) 14, 380, 514, 748
Hpy166II GTNNAC 1 cut(s) 371
Hpy188I TCNGA 3 cut(s) 58, 109, 679
Hpy188III TCNNGA 4 cut(s) 164, 241, 443, 730
Hpy8I GTNNAC 1 cut(s) 371
HpyAV CCTTC 3 cut(s) 733, 778, 787
HpyCH4III ACNGT 3 cut(s) 40, 736, 830
HpyCH4IV ACGT 1 cut(s) 378
HpyCH4V TGCA 4 cut(s) 290, 302, 554, 614
HpyF10VI GCNNNNNNNGC 2 cut(s) 271, 611
HpyF3I CTNAG 2 cut(s) 657, 719
HpySE526I ACGT 1 cut(s) 378
Hsp92II CATG 2 cut(s) 302, 446
Kzo9I GATC 1 cut(s) 643
LmnI GCTCC 1 cut(s) 492
Lsp1109I GCAGC 4 cut(s) 214, 260, 538, 598
LweI GCATC 3 cut(s) 598, 657, 713
MaeI CTAG 1 cut(s) 486
MaeII ACGT 1 cut(s) 378
MalI GATC 1 cut(s) 645
MboI GATC 1 cut(s) 643
MboII GAAGA 5 cut(s) 117, 472, 541, 802, 853
MhlI GDGCHC 1 cut(s) 134
MluCI AATT 6 cut(s) 17, 121, 159, 168, 771, 777
MlyI GAGTC 1 cut(s) 488
MmeI TCCRAC 1 cut(s) 657
MroXI GAANNNNTTC 1 cut(s) 159
MseI TTAA 4 cut(s) 6, 120, 234, 435
MspI CCGG 1 cut(s) 113
MspR9I CCNGG 1 cut(s) 114
Mva1269I GAATGC 1 cut(s) 553
MwoI GCNNNNNNNGC 2 cut(s) 271, 611
NciI CCSGG 1 cut(s) 114
NdeI CATATG 3 cut(s) 276, 286, 456
NdeII GATC 1 cut(s) 643
NlaIII CATG 2 cut(s) 302, 446
PagI TCATGA 1 cut(s) 442
PcsI WCGNNNNNNNCGW 2 cut(s) 228, 251
PctI GAATGC 1 cut(s) 553
PdmI GAANNNNTTC 1 cut(s) 159
PfeI GAWTC 3 cut(s) 439, 622, 749
PkrI GCNGC 4 cut(s) 229, 250, 553, 613
PleI GAGTC 1 cut(s) 487
PpsI GAGTC 1 cut(s) 487
Psp1406I AACGTT 1 cut(s) 378
RsaI GTAC 1 cut(s) 37
RsaNI GTAC 1 cut(s) 36
SaqAI TTAA 4 cut(s) 6, 120, 234, 435
SatI GCNGC 4 cut(s) 228, 249, 552, 612
Sau3AI GATC 1 cut(s) 643
SchI GAGTC 1 cut(s) 488
ScrFI CCNGG 1 cut(s) 114
SduI GDGCHC 1 cut(s) 134
SfaNI GCATC 3 cut(s) 598, 657, 713
SmlI CTYRAG 2 cut(s) 239, 728
SmoI CTYRAG 2 cut(s) 239, 728
Sse9I AATT 6 cut(s) 17, 121, 159, 168, 771, 777
SsiI CCGC 5 cut(s) 295, 393, 593, 605, 746
SspMI CTAG 1 cut(s) 486
StyD4I CCNGG 1 cut(s) 112
StyI CCWWGG 1 cut(s) 573
TaaI ACNGT 3 cut(s) 40, 736, 830
TaiI ACGT 1 cut(s) 381
TaqI TCGA 1 cut(s) 128
TasI AATT 6 cut(s) 17, 121, 159, 168, 771, 777
TatI WGTACW 1 cut(s) 35
TfiI GAWTC 3 cut(s) 439, 622, 749
Tru1I TTAA 4 cut(s) 6, 120, 234, 435
Tru9I TTAA 4 cut(s) 6, 120, 234, 435
TscAI CASTG 1 cut(s) 807
TseI GCWGC 4 cut(s) 227, 248, 551, 611
TspDTI ATGAA 4 cut(s) 431, 459, 473, 542
TspRI CASTG 1 cut(s) 807
XapI RAATTY 3 cut(s) 17, 159, 771
XmnI GAANNNNTTC 1 cut(s) 159
XspI CTAG 1 cut(s) 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.