Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0006197

Physical Location & Seq

Genomic Coordinates Reverse (-)

9324022 .. 9325661

Gene Structure 1640 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G079100.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGCTTAAACATCTCAAATTTACCCAAAGGTTAGAAACCCTAAACCCATTTACCCTATTGATTAGATATTGCCATTTTCAATCGAAGCTGTGTTTTAATTCTTCGAGCCCATCATCGTGTTTGGCACCCCCGAAAATTGTAGAAAACAGTGTTGCGATTTTATGGGATTTGGATACCAAACCACCCAAATCAGTGTCGCCCTACGAAGCCGCCGTCAAGCTCAAGAGGGCGGCTTCGTCTTTTGGGCTCGTTCGCCATATGATAGCGTATGCGAACCGGCATGCGCTTAATTATGTTCCACAGGTTGTCAGAGAAAGGAAAGAGAGGAACAGGGTTGTGATTAGGGATGGTGAATTGAACGTTTGTAGGGTTTGCGGGAGGAGATTTTATACTAATGAGAAGCTTTTGAATCATTTCAAGATTCATGAGAGGGAGCATGCGAAGAGGTTGAACCAGATTGAGTCTGCTAGAGGGAGCAGGAGGGTGAAGCTGGTGGGCAAGTATTCAATGAAGATGGAGAAGTATAAGAACGGTGCAAGGGATGTCTTGACACCCAAGGCGGGGCGGGGTTTGGCAGACGAGGTGAAGCGTGCAGGGTTTTGGGTTCGGAGCGTGATGGATAACCCTCAGAGGGTGGATGCTGCATTGAGGAATCACATTGTGGATATGATGGATCACAAGAGAGCTGAGTGTTTGATGCTTGTGTCAGATGATTCGGATTTTGTGGATGTTGTGATGGAGGCCAAGCTGAGATGTCTCAAGACGGTGGTTGTGGGGGATTTTGGTGACGGGGCTCTGAAGAGGGCTGCGGATTCGGGGTTTTCTTGGAATGAAATTCTAATCGGGAAGGCGAAGAAGGAGGCGGTGTCAGTTGTGGGGAAATGGAAAGACCGTGATGTGTTGAAGAGATTGGAGTGGACATACAAGCCAGATGAGGAGCAAAGTGTGAATAGCTGGGATGATGAGGTTGATGGTGAAAGCGAGGATGAGGAAATTGAAGGTATTGTTGATGGAGTGAATGACAATTTAGGGAAGGATGTTAGTGGCAGATGGTGGGAGCTTGACTCTGATGCTGATTCCTCTAAATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NYN

Protein Analysis

364

Amino Acids

41.44

Weight (kDa)

8.85

Isoelectric Point (pI)

41.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12240
fragaria_vesca	FvH4_5g00630 FvH4_5g00630 FvH4_5g00630 FvH4_5g00630 FvH4_5g00630 FvH4_5g00630 FvH4_5g00630 FvH4_5g00630 FvH4_5g00630
malus_domestica	MD09G1283800.v1.1
prunus_persica	Prupe.2G054400_v2.0.a1 Prupe.2G054600_v2.0.a1 Prupe.5G079100_v2.0.a1 Prupe.5G079100_v2.0.a1 Prupe.5G079100_v2.0.a1
pyrus_communis	pycom09g19170
rosa_chinensis	RchiOBHm_Chr7g0201631
rosa_laevigata	RLG00000003660
rosa_multiflora	Rmu_sc0004811.1_g000002
rosa_roxburghii	Rroxscaffold_3G00255180
rosa_rugosa	Rorug07G0065200
rosa_samantha	Rh7AG192000 Rh7BG194200 Rh7CG203200 Rh7DG197200
rosa_wichuraiana	Rw7G016840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	124
AciI	CCGC	7 cut(s)	210, 230, 375, 560, 565, 809, 863
AclI	AACGTT	1 cut(s)	360
AclWI	GGATC	1 cut(s)	681
AcsI	RAATTY	2 cut(s)	17, 834
AcuI	CTGAAG	1 cut(s)	818
AdeI	CACNNNGTG	1 cut(s)	661
AfiI	CCNNNNNNNGG	3 cut(s)	560, 561, 631
AgsI	TTSAA	8 cut(s)	80, 358, 409, 418, 451, 507, 904, 998
AluBI	AGCT	8 cut(s)	88, 220, 403, 490, 686, 748, 954, 1060
AluI	AGCT	8 cut(s)	88, 220, 403, 490, 686, 748, 954, 1060
Alw26I	GTCTC	1 cut(s)	761
AlwI	GGATC	1 cut(s)	681
AoxI	GGCC	1 cut(s)	741
ApeKI	GCWGC	2 cut(s)	641, 806
ApoI	RAATTY	2 cut(s)	17, 834
ArsI	GACNNNNNNTTYG	2 cut(s)	198, 230
Asp700I	GAANNNNTTC	1 cut(s)	413
AspLEI	GCGC	1 cut(s)	286
AsuHPI	GGTGA	5 cut(s)	362, 496, 595, 797, 986
BanI	GGYRCC	1 cut(s)	124
BanII	GRGCYC	3 cut(s)	110, 249, 796
BbvI	GCAGC	2 cut(s)	628, 793
BccI	CCATC	9 cut(s)	118, 341, 508, 610, 664, 730, 965, 1004, 1044
BceAI	ACGGC	1 cut(s)	197
BciVI	GTATCC	1 cut(s)	166
BcoDI	GTCTC	1 cut(s)	761
BfaI	CTAG	1 cut(s)	468
BfuI	GTATCC	1 cut(s)	166
BisI	GCNGC	4 cut(s)	210, 231, 642, 807
BlsI	GCNGC	4 cut(s)	211, 232, 643, 808
BmiI	GGNNCC	1 cut(s)	126
BmsI	GCATC	3 cut(s)	628, 687, 1060
BplI	GAGNNNNNCTC	2 cut(s)	1049, 1081
BpuEI	CTTGAG	2 cut(s)	206, 743
BsaJI	CCNNGG	1 cut(s)	555
BsaXI	ACNNNNNCTCC	2 cut(s)	851, 881
Bsc4I	CCNNNNNNNGG	3 cut(s)	560, 561, 631
Bse118I	RCCGGY	1 cut(s)	276
BseDI	CCNNGG	1 cut(s)	555
BseGI	GGATG	7 cut(s)	352, 547, 643, 733, 964, 991, 1042
BseLI	CCNNNNNNNGG	3 cut(s)	560, 561, 631
BseMII	CTCAG	3 cut(s)	641, 678, 740
BseRI	GAGGAG	2 cut(s)	394, 950
BseXI	GCAGC	2 cut(s)	628, 793
BseYI	CCCAGC	1 cut(s)	954
BsgI	GTGCAG	1 cut(s)	612
BshFI	GGCC	1 cut(s)	743
BshNI	GGYRCC	1 cut(s)	124
BsiSI	CCGG	1 cut(s)	277
BslI	CCNNNNNNNGG	3 cut(s)	560, 561, 631
BsmAI	GTCTC	1 cut(s)	761
BsnI	GGCC	1 cut(s)	743
Bsp1286I	GDGCHC	3 cut(s)	110, 249, 796
Bsp143I	GATC	1 cut(s)	673
BspACI	CCGC	7 cut(s)	210, 230, 375, 560, 565, 809, 863
BspANI	GGCC	1 cut(s)	743
BspCNI	CTCAG	3 cut(s)	640, 679, 741
BspHI	TCATGA	1 cut(s)	424
BspLI	GGNNCC	1 cut(s)	126
BspPI	GGATC	1 cut(s)	681
BspT107I	GGYRCC	1 cut(s)	124
BsrFI	RCCGGY	1 cut(s)	276
BssAI	RCCGGY	1 cut(s)	276
BssECI	CCNNGG	1 cut(s)	555
BssMI	GATC	1 cut(s)	673
BssT1I	CCWWGG	1 cut(s)	555
Bst4CI	ACNGT	4 cut(s)	149, 533, 766, 893
Bst6I	CTCTTC	3 cut(s)	437, 794, 899
BstC8I	GCNNGC	3 cut(s)	282, 438, 591
BstDEI	CTNAG	3 cut(s)	627, 687, 749
BstF5I	GGATG	7 cut(s)	352, 547, 643, 733, 964, 991, 1042
BstHHI	GCGC	1 cut(s)	286
BstKTI	GATC	1 cut(s)	676
BstMAI	GTCTC	1 cut(s)	761
BstMBI	GATC	1 cut(s)	673
BstNSI	RCATGY	2 cut(s)	284, 440
BstV1I	GCAGC	2 cut(s)	628, 793
BsuI	GTATCC	1 cut(s)	166
BsuRI	GGCC	1 cut(s)	743
BtsCI	GGATG	7 cut(s)	352, 547, 643, 733, 964, 991, 1042
BtsIMutI	CAGTG	2 cut(s)	154, 198
Cac8I	GCNNGC	3 cut(s)	282, 438, 591
CciI	TCATGA	1 cut(s)	424
CfoI	GCGC	1 cut(s)	286
Cfr10I	RCCGGY	1 cut(s)	276
CviAII	CATG	3 cut(s)	281, 425, 437
DdeI	CTNAG	3 cut(s)	627, 687, 749
DpnI	GATC	1 cut(s)	675
DpnII	GATC	1 cut(s)	673
DraIII	CACNNNGTG	1 cut(s)	661
Eam1104I	CTCTTC	3 cut(s)	437, 794, 899
EarI	CTCTTC	3 cut(s)	437, 794, 899
Eco130I	CCWWGG	1 cut(s)	555
Eco24I	GRGCYC	3 cut(s)	110, 249, 796
Eco57I	CTGAAG	1 cut(s)	818
EcoT14I	CCWWGG	1 cut(s)	555
EcoT38I	GRGCYC	3 cut(s)	110, 249, 796
ErhI	CCWWGG	1 cut(s)	555
FaeI	CATG	3 cut(s)	284, 428, 440
FatI	CATG	3 cut(s)	280, 424, 436
FauI	CCCGC	3 cut(s)	368, 553, 558
FauNDI	CATATG	1 cut(s)	258
Fnu4HI	GCNGC	4 cut(s)	210, 231, 642, 807
FokI	GGATG	7 cut(s)	359, 554, 650, 740, 971, 998, 1049
FriOI	GRGCYC	3 cut(s)	110, 249, 796
Fsp4HI	GCNGC	4 cut(s)	210, 231, 642, 807
FspBI	CTAG	1 cut(s)	468
GlaI	GCGC	1 cut(s)	285
GluI	GCNGC	4 cut(s)	210, 231, 642, 807
GsaI	CCCAGC	1 cut(s)	958
HaeIII	GGCC	1 cut(s)	743
HapII	CCGG	1 cut(s)	277
HhaI	GCGC	1 cut(s)	286
Hin1II	CATG	3 cut(s)	284, 428, 440
Hin6I	GCGC	1 cut(s)	284
HinP1I	GCGC	1 cut(s)	284
HindIII	AAGCTT	1 cut(s)	401
HinfI	GANTC	8 cut(s)	409, 421, 461, 652, 713, 812, 1064, 1076
HpaII	CCGG	1 cut(s)	277
HphI	GGTGA	5 cut(s)	362, 496, 595, 797, 986
Hpy166II	GTNNAC	1 cut(s)	918
Hpy188I	TCNGA	7 cut(s)	311, 609, 630, 709, 718, 798, 1069
Hpy188III	TCNNGA	6 cut(s)	223, 418, 425, 547, 760, 844
Hpy8I	GTNNAC	1 cut(s)	918
HpyAV	CCTTC	4 cut(s)	841, 850, 992, 1027
HpyCH4III	ACNGT	4 cut(s)	149, 533, 766, 893
HpyCH4IV	ACGT	1 cut(s)	360
HpyCH4V	TGCA	3 cut(s)	536, 593, 644
HpyF3I	CTNAG	3 cut(s)	627, 687, 749
HpySE526I	ACGT	1 cut(s)	360
Hsp92II	CATG	3 cut(s)	284, 428, 440
HspAI	GCGC	1 cut(s)	284
Kzo9I	GATC	1 cut(s)	673
LmnI	GCTCC	5 cut(s)	433, 474, 609, 937, 1057
LpnPI	CCDG	9 cut(s)	287, 290, 316, 463, 467, 476, 579, 940, 942
Lsp1109I	GCAGC	2 cut(s)	628, 793
LweI	GCATC	3 cut(s)	628, 687, 1060
MaeI	CTAG	1 cut(s)	468
MaeII	ACGT	1 cut(s)	360
MaeIII	GTNAC	1 cut(s)	785
MalI	GATC	1 cut(s)	675
MboI	GATC	1 cut(s)	673
MboII	GAAGA	6 cut(s)	93, 454, 523, 811, 865, 916
MhlI	GDGCHC	3 cut(s)	110, 249, 796
MluCI	AATT	8 cut(s)	17, 97, 135, 289, 353, 834, 993, 1024
MlyI	GAGTC	2 cut(s)	470, 1058
MroXI	GAANNNNTTC	1 cut(s)	413
MseI	TTAA	3 cut(s)	6, 96, 288
MslI	CAYNNNNRTG	1 cut(s)	115
MspI	CCGG	1 cut(s)	277
NdeI	CATATG	1 cut(s)	258
NdeII	GATC	1 cut(s)	673
NlaIII	CATG	3 cut(s)	284, 428, 440
NlaIV	GGNNCC	1 cut(s)	126
NmuCI	GTSAC	1 cut(s)	785
NspI	RCATGY	2 cut(s)	284, 440
PaeI	GCATGC	2 cut(s)	284, 440
PagI	TCATGA	1 cut(s)	424
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PdmI	GAANNNNTTC	1 cut(s)	413
PfeI	GAWTC	6 cut(s)	409, 421, 652, 713, 812, 1076
PkrI	GCNGC	4 cut(s)	211, 232, 643, 808
PleI	GAGTC	2 cut(s)	469, 1058
PpsI	GAGTC	2 cut(s)	469, 1058
Psp1406I	AACGTT	1 cut(s)	360
PspFI	CCCAGC	1 cut(s)	954
PspN4I	GGNNCC	1 cut(s)	126
RseI	CAYNNNNRTG	1 cut(s)	115
SaqAI	TTAA	3 cut(s)	6, 96, 288
SatI	GCNGC	4 cut(s)	210, 231, 642, 807
Sau3AI	GATC	1 cut(s)	673
SchI	GAGTC	2 cut(s)	470, 1058
SduI	GDGCHC	3 cut(s)	110, 249, 796
SfaNI	GCATC	3 cut(s)	628, 687, 1060
SmiMI	CAYNNNNRTG	1 cut(s)	115
SmlI	CTYRAG	2 cut(s)	221, 758
SmoI	CTYRAG	2 cut(s)	221, 758
SphI	GCATGC	2 cut(s)	284, 440
Sse9I	AATT	8 cut(s)	17, 97, 135, 289, 353, 834, 993, 1024
SsiI	CCGC	7 cut(s)	210, 230, 375, 560, 565, 809, 863
SspMI	CTAG	1 cut(s)	468
StyI	CCWWGG	1 cut(s)	555
TaaI	ACNGT	4 cut(s)	149, 533, 766, 893
TaiI	ACGT	1 cut(s)	363
TaqI	TCGA	2 cut(s)	83, 104
TasI	AATT	8 cut(s)	17, 97, 135, 289, 353, 834, 993, 1024
TauI	GCSGC	2 cut(s)	212, 233
TfiI	GAWTC	6 cut(s)	409, 421, 652, 713, 812, 1076
Tru1I	TTAA	3 cut(s)	6, 96, 288
Tru9I	TTAA	3 cut(s)	6, 96, 288
TscAI	CASTG	2 cut(s)	154, 198
TseFI	GTSAC	1 cut(s)	785
TseI	GCWGC	2 cut(s)	641, 806
Tsp45I	GTSAC	1 cut(s)	785
TspDTI	ATGAA	3 cut(s)	413, 524, 846
TspRI	CASTG	2 cut(s)	154, 198
XapI	RAATTY	2 cut(s)	17, 834
XceI	RCATGY	2 cut(s)	284, 440
XmnI	GAANNNNTTC	1 cut(s)	413
XspI	CTAG	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.