FvH4_5g00630

NYN domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0006197
Physical Location & Seq
Reverse (-)
378499 .. 380770
2272 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g00630.t2

Sequence Viewer

Length: 1068 bp
ATGCCTATGCATCTCAAATTTCGCAAATTTTCCATCCCAATTCAACCCAAATGGTCACAATATCTGTTCATCAGACTTCGCCATTTTCAATCCAACCCACCTCTCAATTCTCCATCCCAACCCAGCGTTGCGATTTTCTGGGACTTAGAAACCAGACCCCCAAAATCAGTCTCGCCGTTCGAGGCCGCCGGCAGGCTCAAGACGGCGGCTTCGTCGTTCGGGCTGGTCAGGCACATGATCGCATACGCTCCCCGCCACGCGTGCAACTCTGTTCCTCAAGTTGTGGGGAAGATAAGGAAAGAGAGGAACAGAGTTGTGATTAGAGACGAAGCCAACATTTGCAGGGTTTGTGGGAGGAGGTTTTATACTAAAGAGAAGCTTGTGAATCACTTTAGGGTTCATGAAAGTGAGCACATGAAAAGGCTGAGTCAAATCGAGTCGGCGAGTGGGAGTAGGAGGGTGAAGCTGGTGGGGAAGTATGCAATGAAGATGGAGAAGTATAGGAATGCAGTTAGGGATGTGATGATTCCGAAGCAAGGGAATGGTTTGGTGAGTGAGTTGAAGCGAGCTGGGTTTTGGGTGAGGAGTTTGCCTGATAAGCCTCGGGCTGGTTTTGTTGTGGTGAGTGATGACATTGTGGAGATGATGGATGAGAGGAGGTTTGAGTGTTTGGTGCTTGTTTCGGATGATTCGGAGTTTGTGGATGTTGTGATGGAGGCGAGGAGGAGGTGTGTGAAGACTGTTGTTGTGGGGGATTTAGGAGATGGGGGTTTGAAGAGGGCTGCTGATTCGGGGTTTTTGTGGAGGGAGATTTTGTTGGGGAAGGCTAAGAAGGAGGCGGTTTCGGTTGTGAGGAAGTGGAAAGACAGTGATATTTTGAAGAGGTTGGAGTGGAGGTACAAGCCAGATGAGGATAGGAGGGTGCATAGATTGGATGATGGAGGTGATGGTGGGAGTGAGGATGAGGAATTTGAGAGTTTTGTTGGTGGGATGAATGAGAGTTGTTTGCGAAATGATGATTCGAGAAAATGGTGGGAGCTTGATTCTGATGCTGATGCGGTTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NYN

Protein Analysis

356

Amino Acids

40.84

Weight (kDa)

9.52

Isoelectric Point (pI)

57.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NYN PF01936 180 - 263 3.8e-06 NYN domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 260
AciI CCGC 5 cut(s) 186, 206, 253, 839, 1058
AcsI RAATTY 3 cut(s) 17, 26, 968
AfaI GTAC 1 cut(s) 899
AfiI CCNNNNNNNGG 3 cut(s) 192, 536, 608
AflIII ACRYGT 1 cut(s) 258
AgsI TTSAA 5 cut(s) 44, 89, 562, 775, 880
AluBI AGCT 4 cut(s) 379, 466, 569, 1039
AluI AGCT 4 cut(s) 379, 466, 569, 1039
Alw21I GWGCWC 1 cut(s) 414
Alw26I GTCTC 2 cut(s) 175, 318
Ama87I CYCGRG 1 cut(s) 603
AoxI GGCC 1 cut(s) 183
ApeKI GCWGC 1 cut(s) 782
ApoI RAATTY 3 cut(s) 17, 26, 968
ArsI GACNNNNNNTTYG 2 cut(s) 193, 225
AsuHPI GGTGA 5 cut(s) 472, 562, 592, 634, 956
AvaI CYCGRG 1 cut(s) 603
BbsI GAAGAC 1 cut(s) 743
Bbv12I GWGCWC 1 cut(s) 414
BbvI GCAGC 1 cut(s) 769
BccI CCATC 8 cut(s) 41, 121, 484, 640, 706, 758, 932, 941
BceAI ACGGC 2 cut(s) 160, 219
BcoDI GTCTC 2 cut(s) 175, 318
BisI GCNGC 3 cut(s) 186, 207, 783
BlsI GCNGC 3 cut(s) 187, 208, 784
BmeT110I CYCGRG 1 cut(s) 603
BmsI GCATC 3 cut(s) 19, 1039, 1045
BpiI GAAGAC 1 cut(s) 743
BpuEI CTTGAG 2 cut(s) 182, 261
BsaJI CCNNGG 1 cut(s) 602
BsaXI ACNNNNNCTCC 6 cut(s) 715, 745, 800, 830, 881, 911
Bsc4I CCNNNNNNNGG 3 cut(s) 192, 536, 608
Bse118I RCCGGY 1 cut(s) 188
Bse3DI GCAATG 1 cut(s) 489
BseDI CCNNGG 1 cut(s) 602
BseGI GGATG 9 cut(s) 33, 113, 523, 655, 691, 709, 940, 967, 996
BseLI CCNNNNNNNGG 3 cut(s) 192, 536, 608
BseMI GCAATG 1 cut(s) 489
BseMII CTCAG 1 cut(s) 416
BseRI GAGGAG 5 cut(s) 370, 598, 670, 736, 739
BseXI GCAGC 1 cut(s) 769
BseYI CCCAGC 2 cut(s) 122, 569
Bsh1236I CGCG 1 cut(s) 260
BshFI GGCC 1 cut(s) 185
BsiHKAI GWGCWC 1 cut(s) 414
BsiHKCI CYCGRG 1 cut(s) 603
BsiSI CCGG 1 cut(s) 189
BslFI GGGAC 1 cut(s) 155
BslI CCNNNNNNNGG 3 cut(s) 192, 536, 608
BsmAI GTCTC 2 cut(s) 175, 318
BsmBI CGTCTC 1 cut(s) 318
BsmFI GGGAC 1 cut(s) 155
BsmI GAATGC 1 cut(s) 511
BsnI GGCC 1 cut(s) 185
BsoBI CYCGRG 1 cut(s) 603
Bsp1286I GDGCHC 1 cut(s) 414
Bsp143I GATC 1 cut(s) 237
BspACI CCGC 5 cut(s) 186, 206, 253, 839, 1058
BspANI GGCC 1 cut(s) 185
BspCNI CTCAG 1 cut(s) 417
BspFNI CGCG 1 cut(s) 260
BspHI TCATGA 1 cut(s) 400
BsrDI GCAATG 1 cut(s) 489
BsrFI RCCGGY 1 cut(s) 188
BssAI RCCGGY 1 cut(s) 188
BssECI CCNNGG 1 cut(s) 602
BssMI GATC 1 cut(s) 237
Bst4CI ACNGT 2 cut(s) 742, 869
Bst6I CTCTTC 2 cut(s) 770, 875
BstC8I GCNNGC 4 cut(s) 190, 194, 262, 567
BstDEI CTNAG 3 cut(s) 145, 425, 828
BstF5I GGATG 9 cut(s) 33, 113, 523, 655, 691, 709, 940, 967, 996
BstFNI CGCG 1 cut(s) 260
BstKTI GATC 1 cut(s) 240
BstMAI GTCTC 2 cut(s) 175, 318
BstMBI GATC 1 cut(s) 237
BstMWI GCNNNNNNNGC 3 cut(s) 229, 261, 598
BstUI CGCG 1 cut(s) 260
BstV1I GCAGC 1 cut(s) 769
BstV2I GAAGAC 1 cut(s) 743
BsuRI GGCC 1 cut(s) 185
BtsCI GGATG 9 cut(s) 33, 113, 523, 655, 691, 709, 940, 967, 996
BtsIMutI CAGTG 1 cut(s) 874
Cac8I GCNNGC 4 cut(s) 190, 194, 262, 567
CciI TCATGA 1 cut(s) 400
Cfr10I RCCGGY 1 cut(s) 188
Csp6I GTAC 1 cut(s) 898
CviAII CATG 3 cut(s) 235, 401, 415
CviQI GTAC 1 cut(s) 898
DdeI CTNAG 3 cut(s) 145, 425, 828
DpnI GATC 1 cut(s) 239
DpnII GATC 1 cut(s) 237
Eam1104I CTCTTC 2 cut(s) 770, 875
EarI CTCTTC 2 cut(s) 770, 875
Eco88I CYCGRG 1 cut(s) 603
EcoT22I ATGCAT 1 cut(s) 12
Esp3I CGTCTC 1 cut(s) 318
FaeI CATG 3 cut(s) 238, 404, 418
FalI AAGNNNNNCTT 2 cut(s) 363, 395
FaqI GGGAC 1 cut(s) 155
FatI CATG 3 cut(s) 234, 400, 414
FauI CCCGC 1 cut(s) 260
Fnu4HI GCNGC 3 cut(s) 186, 207, 783
FokI GGATG 9 cut(s) 20, 100, 530, 662, 698, 716, 947, 974, 1003
Fsp4HI GCNGC 3 cut(s) 186, 207, 783
GluI GCNGC 3 cut(s) 186, 207, 783
GsaI CCCAGC 2 cut(s) 126, 573
HaeIII GGCC 1 cut(s) 185
HapII CCGG 1 cut(s) 189
Hin1II CATG 3 cut(s) 238, 404, 418
HindIII AAGCTT 1 cut(s) 377
HinfI GANTC 8 cut(s) 385, 427, 437, 526, 689, 788, 1019, 1043
HpaII CCGG 1 cut(s) 189
HphI GGTGA 5 cut(s) 472, 562, 592, 634, 956
Hpy188I TCNGA 5 cut(s) 74, 531, 685, 694, 1048
Hpy188III TCNNGA 3 cut(s) 199, 401, 1023
Hpy99I CGWCG 1 cut(s) 217
HpyAV CCTTC 2 cut(s) 817, 826
HpyCH4III ACNGT 2 cut(s) 742, 869
HpyCH4V TGCA 6 cut(s) 10, 264, 342, 482, 509, 925
HpyF10VI GCNNNNNNNGC 3 cut(s) 229, 261, 598
HpyF3I CTNAG 3 cut(s) 145, 425, 828
Hsp92II CATG 3 cut(s) 238, 404, 418
KroI GCCGGC 1 cut(s) 188
KroNI GCCGGC 1 cut(s) 190
Kzo9I GATC 1 cut(s) 237
LmnI GCTCC 2 cut(s) 253, 1036
Lsp1109I GCAGC 1 cut(s) 769
LweI GCATC 3 cut(s) 19, 1039, 1045
MaeIII GTNAC 1 cut(s) 54
MalI GATC 1 cut(s) 239
MboI GATC 1 cut(s) 237
MboII GAAGA 5 cut(s) 301, 499, 748, 787, 892
MhlI GDGCHC 1 cut(s) 414
MluCI AATT 5 cut(s) 17, 26, 39, 106, 968
MluI ACGCGT 1 cut(s) 258
MlyI GAGTC 2 cut(s) 436, 446
MmeI TCCRAC 2 cut(s) 117, 867
Mph1103I ATGCAT 1 cut(s) 12
MroNI GCCGGC 1 cut(s) 188
MslI CAYNNNNRTG 1 cut(s) 405
MspI CCGG 1 cut(s) 189
Mva1269I GAATGC 1 cut(s) 511
MvnI CGCG 1 cut(s) 260
MwoI GCNNNNNNNGC 3 cut(s) 229, 261, 598
NaeI GCCGGC 1 cut(s) 190
NdeII GATC 1 cut(s) 237
NgoMIV GCCGGC 1 cut(s) 188
NlaIII CATG 3 cut(s) 238, 404, 418
NmuCI GTSAC 1 cut(s) 54
NsiI ATGCAT 1 cut(s) 12
PagI TCATGA 1 cut(s) 400
PcsI WCGNNNNNNNCGW 1 cut(s) 209
PctI GAATGC 1 cut(s) 511
PdiI GCCGGC 1 cut(s) 190
PfeI GAWTC 6 cut(s) 385, 526, 689, 788, 1019, 1043
PkrI GCNGC 3 cut(s) 187, 208, 784
PleI GAGTC 2 cut(s) 435, 445
PpsI GAGTC 2 cut(s) 435, 445
PspFI CCCAGC 2 cut(s) 122, 569
RsaI GTAC 1 cut(s) 899
RsaNI GTAC 1 cut(s) 898
RseI CAYNNNNRTG 1 cut(s) 405
SatI GCNGC 3 cut(s) 186, 207, 783
Sau3AI GATC 1 cut(s) 237
SchI GAGTC 2 cut(s) 436, 446
SduI GDGCHC 1 cut(s) 414
SfaNI GCATC 3 cut(s) 19, 1039, 1045
SmiMI CAYNNNNRTG 1 cut(s) 405
SmlI CTYRAG 2 cut(s) 197, 276
SmoI CTYRAG 2 cut(s) 197, 276
Sse9I AATT 5 cut(s) 17, 26, 39, 106, 968
SsiI CCGC 5 cut(s) 186, 206, 253, 839, 1058
TaaI ACNGT 2 cut(s) 742, 869
TaqI TCGA 3 cut(s) 180, 435, 1022
TasI AATT 5 cut(s) 17, 26, 39, 106, 968
TauI GCSGC 2 cut(s) 188, 209
TfiI GAWTC 6 cut(s) 385, 526, 689, 788, 1019, 1043
TscAI CASTG 1 cut(s) 874
TseFI GTSAC 1 cut(s) 54
TseI GCWGC 1 cut(s) 782
Tsp45I GTSAC 1 cut(s) 54
TspDTI ATGAA 7 cut(s) 58, 389, 417, 431, 500, 1007, 1053
TspRI CASTG 1 cut(s) 874
XapI RAATTY 3 cut(s) 17, 26, 968
Zsp2I ATGCAT 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.