Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0006197

Physical Location & Seq

Genomic Coordinates Reverse (-)

6457424 .. 6458968

Gene Structure 1545 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G054600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGCTTAAACATCTCAAATTTCACCACATTTTCTGTACAGTTCAATCCAAAAGGTCAGAAACCCTAAACCCATTTACCCTGTTGATTAGATATTGCCATTTCCAATCAGAACCGGGTTTTAATTCTTCGAGCCCAACATCGTGTTTGCCACCCCAAAAAATTCCAGAAATTGCGATTTTCTGGGATTTGGATACCAAACCACCCAAATCAGTCTCGCCCTACGAAGCTGCCGTTAAGCTCAAGACGGCAGCTTCGTCTTTCAGGCTTGTTCGGCATATGATAGCATATGCAAACCGCCATGCACTTGATTATGTTCCACAGGTTGTTAGGGAAAGGAAAGAGAGGAACAGGGTTGTGATTAGGGATGGTGAACTGAACGTTTGTAGGGTTTGCGGGAGGAGATTTTATACTAATGAGAAGCTTTTGAACCACTTTAAGATTCATGAAAAAGAGCATATGAAGAGGTTGAGCCAGATTGAGTCTGCTAGAGGGAGCAGGAGGGTGAAGCTGGTTGGTAAGTATTCAATGAAGATGGAAAAGTATAAGAATGCTGCAAGGGATGTTTTGACACCCAAGGCAGGGAGGGGTTTGGCGGATGAGGTGAAGCGGGCTGGGTTTTGGGTTCGGAGCGTGGTGGATAAACCTCAGAGGGCGGATGCTGCATTGAGGAATCACATTGTGGATATGATGGATCACAGGAGAGCTGAGTGTTTGATGCTTTGTGTCGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NYN

Protein Analysis

244

Amino Acids

28.17

Weight (kDa)

10.02

Isoelectric Point (pI)

53.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12240
fragaria_vesca	FvH4_5g00630 FvH4_5g00630 FvH4_5g00630 FvH4_5g00630 FvH4_5g00630 FvH4_5g00630 FvH4_5g00630 FvH4_5g00630 FvH4_5g00630
malus_domestica	MD09G1283800.v1.1
prunus_persica	Prupe.2G054400_v2.0.a1 Prupe.2G054600_v2.0.a1 Prupe.5G079100_v2.0.a1 Prupe.5G079100_v2.0.a1 Prupe.5G079100_v2.0.a1
pyrus_communis	pycom09g19170
rosa_chinensis	RchiOBHm_Chr7g0201631
rosa_laevigata	RLG00000003660
rosa_multiflora	Rmu_sc0004811.1_g000002
rosa_roxburghii	Rroxscaffold_3G00255180
rosa_rugosa	Rorug07G0065200
rosa_samantha	Rh7AG192000 Rh7BG194200 Rh7CG203200 Rh7DG197200
rosa_wichuraiana	Rw7G016840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	295, 393, 593, 607, 653
AclI	AACGTT	1 cut(s)	378
AclWI	GGATC	1 cut(s)	699
AcsI	RAATTY	2 cut(s)	17, 159
AdeI	CACNNNGTG	1 cut(s)	679
AfaI	GTAC	1 cut(s)	37
AfiI	CCNNNNNNNGG	2 cut(s)	578, 579
AgsI	TTSAA	3 cut(s)	44, 427, 525
AluBI	AGCT	6 cut(s)	227, 238, 251, 421, 508, 704
AluI	AGCT	6 cut(s)	227, 238, 251, 421, 508, 704
Alw26I	GTCTC	1 cut(s)	217
AlwI	GGATC	1 cut(s)	699
ApeKI	GCWGC	4 cut(s)	227, 248, 551, 659
ApoI	RAATTY	2 cut(s)	17, 159
ArsI	GACNNNNNNTTYG	2 cut(s)	235, 267
AsuC2I	CCSGG	1 cut(s)	114
AsuHPI	GGTGA	4 cut(s)	14, 380, 514, 613
BanII	GRGCYC	1 cut(s)	134
BbvI	GCAGC	4 cut(s)	214, 260, 538, 646
BccI	CCATC	3 cut(s)	359, 526, 682
BceAI	ACGGC	2 cut(s)	215, 261
BciVI	GTATCC	1 cut(s)	184
BcnI	CCSGG	1 cut(s)	114
BcoDI	GTCTC	1 cut(s)	217
BfaI	CTAG	1 cut(s)	486
BfuI	GTATCC	1 cut(s)	184
BisI	GCNGC	4 cut(s)	228, 249, 552, 660
BlsI	GCNGC	4 cut(s)	229, 250, 553, 661
Bme1390I	CCNGG	1 cut(s)	114
BmrFI	CCNGG	1 cut(s)	114
BmsI	GCATC	2 cut(s)	646, 705
BpuEI	CTTGAG	1 cut(s)	224
BpuMI	CCSGG	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	573
Bsc4I	CCNNNNNNNGG	2 cut(s)	578, 579
BseDI	CCNNGG	1 cut(s)	573
BseGI	GGATG	4 cut(s)	370, 565, 601, 661
BseLI	CCNNNNNNNGG	2 cut(s)	578, 579
BseMII	CTCAG	2 cut(s)	659, 696
BseRI	GAGGAG	1 cut(s)	412
BseXI	GCAGC	4 cut(s)	214, 260, 538, 646
BseYI	CCCAGC	1 cut(s)	611
BsiSI	CCGG	1 cut(s)	113
BslI	CCNNNNNNNGG	2 cut(s)	578, 579
BsmAI	GTCTC	1 cut(s)	217
BsmI	GAATGC	1 cut(s)	553
Bsp1286I	GDGCHC	1 cut(s)	134
Bsp1407I	TGTACA	1 cut(s)	35
Bsp143I	GATC	1 cut(s)	691
BspACI	CCGC	5 cut(s)	295, 393, 593, 607, 653
BspCNI	CTCAG	2 cut(s)	658, 697
BspHI	TCATGA	1 cut(s)	442
BspPI	GGATC	1 cut(s)	699
BsrGI	TGTACA	1 cut(s)	35
BssECI	CCNNGG	1 cut(s)	573
BssMI	GATC	1 cut(s)	691
BssT1I	CCWWGG	1 cut(s)	573
Bst4CI	ACNGT	1 cut(s)	40
Bst6I	CTCTTC	1 cut(s)	455
BstAUI	TGTACA	1 cut(s)	35
BstC8I	GCNNGC	1 cut(s)	609
BstDEI	CTNAG	2 cut(s)	645, 705
BstF5I	GGATG	4 cut(s)	370, 565, 601, 661
BstKTI	GATC	1 cut(s)	694
BstMAI	GTCTC	1 cut(s)	217
BstMBI	GATC	1 cut(s)	691
BstMWI	GCNNNNNNNGC	2 cut(s)	271, 659
BstSCI	CCNGG	1 cut(s)	112
BstV1I	GCAGC	4 cut(s)	214, 260, 538, 646
BsuI	GTATCC	1 cut(s)	184
BtsCI	GGATG	4 cut(s)	370, 565, 601, 661
Cac8I	GCNNGC	1 cut(s)	609
CciI	TCATGA	1 cut(s)	442
Csp6I	GTAC	1 cut(s)	36
CviAII	CATG	2 cut(s)	299, 443
CviQI	GTAC	1 cut(s)	36
DdeI	CTNAG	2 cut(s)	645, 705
DpnI	GATC	1 cut(s)	693
DpnII	GATC	1 cut(s)	691
DraIII	CACNNNGTG	1 cut(s)	679
Eam1104I	CTCTTC	1 cut(s)	455
EarI	CTCTTC	1 cut(s)	455
EciI	GGCGGA	2 cut(s)	608, 668
Eco130I	CCWWGG	1 cut(s)	573
Eco24I	GRGCYC	1 cut(s)	134
EcoT14I	CCWWGG	1 cut(s)	573
EcoT38I	GRGCYC	1 cut(s)	134
ErhI	CCWWGG	1 cut(s)	573
FaeI	CATG	2 cut(s)	302, 446
FatI	CATG	2 cut(s)	298, 442
FauI	CCCGC	2 cut(s)	386, 600
FauNDI	CATATG	3 cut(s)	276, 286, 456
Fnu4HI	GCNGC	4 cut(s)	228, 249, 552, 660
FokI	GGATG	4 cut(s)	377, 572, 608, 668
FriOI	GRGCYC	1 cut(s)	134
Fsp4HI	GCNGC	4 cut(s)	228, 249, 552, 660
FspBI	CTAG	1 cut(s)	486
GluI	GCNGC	4 cut(s)	228, 249, 552, 660
GsaI	CCCAGC	1 cut(s)	615
HapII	CCGG	1 cut(s)	113
Hin1II	CATG	2 cut(s)	302, 446
HindIII	AAGCTT	1 cut(s)	419
HinfI	GANTC	3 cut(s)	439, 479, 670
HpaII	CCGG	1 cut(s)	113
HphI	GGTGA	4 cut(s)	14, 380, 514, 613
Hpy166II	GTNNAC	1 cut(s)	371
Hpy188I	TCNGA	5 cut(s)	58, 109, 627, 648, 728
Hpy188III	TCNNGA	3 cut(s)	164, 241, 443
Hpy8I	GTNNAC	1 cut(s)	371
HpyCH4III	ACNGT	1 cut(s)	40
HpyCH4IV	ACGT	1 cut(s)	378
HpyCH4V	TGCA	4 cut(s)	290, 302, 554, 662
HpyF10VI	GCNNNNNNNGC	2 cut(s)	271, 659
HpyF3I	CTNAG	2 cut(s)	645, 705
HpySE526I	ACGT	1 cut(s)	378
Hsp92II	CATG	2 cut(s)	302, 446
Kzo9I	GATC	1 cut(s)	691
LmnI	GCTCC	2 cut(s)	492, 627
Lsp1109I	GCAGC	4 cut(s)	214, 260, 538, 646
LweI	GCATC	2 cut(s)	646, 705
MaeI	CTAG	1 cut(s)	486
MaeII	ACGT	1 cut(s)	378
MalI	GATC	1 cut(s)	693
MboI	GATC	1 cut(s)	691
MboII	GAAGA	3 cut(s)	117, 472, 541
MhlI	GDGCHC	1 cut(s)	134
MluCI	AATT	4 cut(s)	17, 121, 159, 168
MlyI	GAGTC	1 cut(s)	488
MmeI	TCCRAC	1 cut(s)	706
MseI	TTAA	4 cut(s)	6, 120, 234, 435
MspI	CCGG	1 cut(s)	113
MspR9I	CCNGG	1 cut(s)	114
Mva1269I	GAATGC	1 cut(s)	553
MwoI	GCNNNNNNNGC	2 cut(s)	271, 659
NciI	CCSGG	1 cut(s)	114
NdeI	CATATG	3 cut(s)	276, 286, 456
NdeII	GATC	1 cut(s)	691
NlaIII	CATG	2 cut(s)	302, 446
PagI	TCATGA	1 cut(s)	442
PcsI	WCGNNNNNNNCGW	2 cut(s)	228, 251
PctI	GAATGC	1 cut(s)	553
PfeI	GAWTC	2 cut(s)	439, 670
PkrI	GCNGC	4 cut(s)	229, 250, 553, 661
PleI	GAGTC	1 cut(s)	487
PpsI	GAGTC	1 cut(s)	487
Psp1406I	AACGTT	1 cut(s)	378
PspFI	CCCAGC	1 cut(s)	611
RsaI	GTAC	1 cut(s)	37
RsaNI	GTAC	1 cut(s)	36
SaqAI	TTAA	4 cut(s)	6, 120, 234, 435
SatI	GCNGC	4 cut(s)	228, 249, 552, 660
Sau3AI	GATC	1 cut(s)	691
SchI	GAGTC	1 cut(s)	488
ScrFI	CCNGG	1 cut(s)	114
SduI	GDGCHC	1 cut(s)	134
SfaNI	GCATC	2 cut(s)	646, 705
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
Sse9I	AATT	4 cut(s)	17, 121, 159, 168
SsiI	CCGC	5 cut(s)	295, 393, 593, 607, 653
SspMI	CTAG	1 cut(s)	486
StyD4I	CCNGG	1 cut(s)	112
StyI	CCWWGG	1 cut(s)	573
TaaI	ACNGT	1 cut(s)	40
TaiI	ACGT	1 cut(s)	381
TaqI	TCGA	1 cut(s)	128
TasI	AATT	4 cut(s)	17, 121, 159, 168
TatI	WGTACW	1 cut(s)	35
TfiI	GAWTC	2 cut(s)	439, 670
Tru1I	TTAA	4 cut(s)	6, 120, 234, 435
Tru9I	TTAA	4 cut(s)	6, 120, 234, 435
TseI	GCWGC	4 cut(s)	227, 248, 551, 659
TspDTI	ATGAA	4 cut(s)	431, 459, 473, 542
XapI	RAATTY	2 cut(s)	17, 159
XspI	CTAG	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.