Rh7AG192000

NYN domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0006197
Physical Location & Seq
Forward (+)
17181022 .. 17184398
3377 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG192000.1

Sequence Viewer

Length: 1104 bp
ATGGTTATACATCTCAAATTTCGCAACTTTTCCTTCCCAATTCAATCCAAAAGGTCAGAAACCCTAAACCCTTTTACGCTATTCATTAGACATTGTCATTTTCAATCGAACCCACCTTTCAATTCTCCATATTTGGCACCACCCAAGATTTCCCAAACCAGCGTGGCAATTTTCTGGGATTTAGAAACCAAACCCCCAAAATCAGTCACGCCGTTCGAGGCCGCCGGCAGGCTCAAGACGGCGGCTTCGTCGTTCGGGCTCGTCAGGCATATGATCGCATACGCCAACCGCCACGCGTTTAATTGTGTTCCTCAAGTTGTGGGGAAGATAAGGAAAGAGAGGAATAGGGTAGTGATTAGGGATGAGCCCAACATTTGTAGGGTATGTGGGAGGAGGTTTTATACTAAAGAGAAGCTTATGAATCATTTTAAGCTGCATGAGAGGGAACACACGAAGAGGTTGAGTCAAATCGAGTCGGCGAGAGGGAGTAGGAGGGTGAAATTGGTGGGGAAGTATTCAATGAAGATGGAGAAGTATAAGAATGCTGTGAGGGATGTGATGGTACCAAAGGAAGGGAATGGTTTGGTTAGTGAGCTGAAGCGGGCGGGGTTTTGGGTTCGGAGTTTGGCTGATAAGCCACAGGCTGGATTTGTTGCATTGAGAAATGACATTTTGGAGATGATGGATCAGAGGAGGTTTGAGTGTTTGGTGCTTGTTTCGGATGATTCGGATTTTGTGGATGTTGTGATGGAGGCGAGGAGGAGGTGTGTGAAGACGGTTGCTGTGGGGGATTTAGGTGATGGGGCTCTGAAGAGGGCTGCGGATTCAGGGTTTTCTTGGAGGGAGATTTTGTTGGGGAAGGCTAAGAAGGAGGCTGTGGCGGTTGTGGGGAAGTGGAAAGACTGTGATATATTGAAGAGATTGGAGTGGAAATACAAGCCAGATGAGGATAGGAGGGTGCATAACTTGGATGGTAAAGTTGATGGTGAGTGTGAGGATGAGGAAATTGGAAGTATTGTTGGTGGGATGAATGACAATTGTTTGCGGAGCGATGATACTGGCAAATGGTGGGAGCTTGACTCTGATGCTGATGCCATTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NYN

Protein Analysis

367

Amino Acids

42.01

Weight (kDa)

9.39

Isoelectric Point (pI)

47.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NYN PF01936 193 - 276 3.2e-08 NYN domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 562
AccB1I GGYRCC 2 cut(s) 136, 562
AccB7I CCANNNNNTGG 1 cut(s) 644
AccII CGCG 1 cut(s) 296
AciI CCGC 8 cut(s) 222, 242, 289, 601, 605, 821, 881, 1045
AclWI GGATC 1 cut(s) 693
AcsI RAATTY 1 cut(s) 17
AcuI CTGAAG 2 cut(s) 617, 830
AfaI GTAC 1 cut(s) 564
AfiI CCNNNNNNNGG 3 cut(s) 228, 572, 644
AflIII ACRYGT 1 cut(s) 294
AgsI TTSAA 5 cut(s) 44, 104, 121, 519, 916
AluBI AGCT 4 cut(s) 415, 433, 595, 1075
AluI AGCT 4 cut(s) 415, 433, 595, 1075
AlwI GGATC 1 cut(s) 693
AoxI GGCC 1 cut(s) 219
ApeKI GCWGC 2 cut(s) 433, 818
ApoI RAATTY 1 cut(s) 17
ArsI GACNNNNNNTTYG 2 cut(s) 229, 261
Asp718I GGTACC 1 cut(s) 562
AsuHPI GGTGA 3 cut(s) 508, 809, 998
BanI GGYRCC 2 cut(s) 136, 562
BanII GRGCYC 3 cut(s) 261, 369, 808
BbsI GAAGAC 1 cut(s) 779
BbvI GCAGC 2 cut(s) 420, 805
BccI CCATC 7 cut(s) 520, 553, 676, 742, 794, 965, 977
BceAI ACGGC 2 cut(s) 196, 255
BisI GCNGC 4 cut(s) 222, 243, 434, 819
BlsI GCNGC 4 cut(s) 223, 244, 435, 820
BmiI GGNNCC 2 cut(s) 138, 564
BmsI GCATC 2 cut(s) 1075, 1081
BpiI GAAGAC 1 cut(s) 779
BplI GAGNNNNNCTC 2 cut(s) 1064, 1096
BpuEI CTTGAG 2 cut(s) 218, 297
BsaXI ACNNNNNCTCC 4 cut(s) 751, 781, 836, 866
Bsc4I CCNNNNNNNGG 3 cut(s) 228, 572, 644
Bse118I RCCGGY 1 cut(s) 224
Bse1I ACTGG 1 cut(s) 1063
BseGI GGATG 7 cut(s) 367, 559, 727, 745, 976, 1003, 1032
BseLI CCNNNNNNNGG 3 cut(s) 228, 572, 644
BseNI ACTGG 1 cut(s) 1063
BseRI GAGGAG 4 cut(s) 406, 706, 772, 775
BseXI GCAGC 2 cut(s) 420, 805
Bsh1236I CGCG 1 cut(s) 296
BshFI GGCC 1 cut(s) 221
BshNI GGYRCC 2 cut(s) 136, 562
BsiSI CCGG 1 cut(s) 225
BslI CCNNNNNNNGG 3 cut(s) 228, 572, 644
BsmI GAATGC 1 cut(s) 547
BsnI GGCC 1 cut(s) 221
Bsp1286I GDGCHC 3 cut(s) 261, 369, 808
Bsp143I GATC 2 cut(s) 273, 685
BspACI CCGC 8 cut(s) 222, 242, 289, 601, 605, 821, 881, 1045
BspANI GGCC 1 cut(s) 221
BspFNI CGCG 1 cut(s) 296
BspLI GGNNCC 2 cut(s) 138, 564
BspPI GGATC 1 cut(s) 693
BspT107I GGYRCC 2 cut(s) 136, 562
BsrFI RCCGGY 1 cut(s) 224
BsrI ACTGG 1 cut(s) 1063
BssAI RCCGGY 1 cut(s) 224
BssMI GATC 2 cut(s) 273, 685
Bst4CI ACNGT 2 cut(s) 778, 905
Bst6I CTCTTC 3 cut(s) 449, 806, 911
BstC8I GCNNGC 3 cut(s) 226, 230, 603
BstDEI CTNAG 1 cut(s) 864
BstF5I GGATG 7 cut(s) 367, 559, 727, 745, 976, 1003, 1032
BstFNI CGCG 1 cut(s) 296
BstKTI GATC 2 cut(s) 276, 688
BstMBI GATC 2 cut(s) 273, 685
BstMWI GCNNNNNNNGC 1 cut(s) 265
BstUI CGCG 1 cut(s) 296
BstV1I GCAGC 2 cut(s) 420, 805
BstV2I GAAGAC 1 cut(s) 779
BsuRI GGCC 1 cut(s) 221
BtgZI GCGATG 1 cut(s) 1065
BtsCI GGATG 7 cut(s) 367, 559, 727, 745, 976, 1003, 1032
Cac8I GCNNGC 3 cut(s) 226, 230, 603
Cfr10I RCCGGY 1 cut(s) 224
Csp6I GTAC 1 cut(s) 563
CviAII CATG 1 cut(s) 437
CviQI GTAC 1 cut(s) 563
DdeI CTNAG 1 cut(s) 864
DpnI GATC 2 cut(s) 275, 687
DpnII GATC 2 cut(s) 273, 685
Eam1104I CTCTTC 3 cut(s) 449, 806, 911
EarI CTCTTC 3 cut(s) 449, 806, 911
Eco24I GRGCYC 3 cut(s) 261, 369, 808
Eco57I CTGAAG 2 cut(s) 617, 830
EcoT38I GRGCYC 3 cut(s) 261, 369, 808
FaeI CATG 1 cut(s) 440
FalI AAGNNNNNCTT 2 cut(s) 399, 431
FatI CATG 1 cut(s) 436
FauI CCCGC 2 cut(s) 594, 598
FauNDI CATATG 1 cut(s) 270
Fnu4HI GCNGC 4 cut(s) 222, 243, 434, 819
FokI GGATG 7 cut(s) 374, 566, 734, 752, 983, 1010, 1039
FriOI GRGCYC 3 cut(s) 261, 369, 808
Fsp4HI GCNGC 4 cut(s) 222, 243, 434, 819
GluI GCNGC 4 cut(s) 222, 243, 434, 819
HaeIII GGCC 1 cut(s) 221
HapII CCGG 1 cut(s) 225
Hin1II CATG 1 cut(s) 440
HindIII AAGCTT 1 cut(s) 413
HinfI GANTC 6 cut(s) 421, 463, 473, 725, 824, 1079
HpaII CCGG 1 cut(s) 225
HphI GGTGA 3 cut(s) 508, 809, 998
Hpy188I TCNGA 7 cut(s) 58, 621, 690, 721, 730, 810, 1084
Hpy188III TCNNGA 1 cut(s) 235
Hpy99I CGWCG 1 cut(s) 253
HpyAV CCTTC 4 cut(s) 43, 566, 853, 862
HpyCH4III ACNGT 2 cut(s) 778, 905
HpyCH4V TGCA 3 cut(s) 436, 656, 961
HpyF10VI GCNNNNNNNGC 1 cut(s) 265
HpyF3I CTNAG 1 cut(s) 864
Hsp92II CATG 1 cut(s) 440
KpnI GGTACC 1 cut(s) 566
KroI GCCGGC 1 cut(s) 224
KroNI GCCGGC 1 cut(s) 226
Kzo9I GATC 2 cut(s) 273, 685
LmnI GCTCC 2 cut(s) 1047, 1072
Lsp1109I GCAGC 2 cut(s) 420, 805
LweI GCATC 2 cut(s) 1075, 1081
MaeIII GTNAC 1 cut(s) 205
MalI GATC 2 cut(s) 275, 687
MboI GATC 2 cut(s) 273, 685
MboII GAAGA 6 cut(s) 337, 466, 535, 784, 823, 928
MfeI CAATTG 1 cut(s) 1036
MhlI GDGCHC 3 cut(s) 261, 369, 808
MluCI AATT 8 cut(s) 17, 39, 121, 168, 301, 500, 1005, 1036
MluI ACGCGT 1 cut(s) 294
MlyI GAGTC 3 cut(s) 472, 482, 1073
MroNI GCCGGC 1 cut(s) 224
MseI TTAA 2 cut(s) 300, 429
MspI CCGG 1 cut(s) 225
MunI CAATTG 1 cut(s) 1036
Mva1269I GAATGC 1 cut(s) 547
MvnI CGCG 1 cut(s) 296
MwoI GCNNNNNNNGC 1 cut(s) 265
NaeI GCCGGC 1 cut(s) 226
NdeI CATATG 1 cut(s) 270
NdeII GATC 2 cut(s) 273, 685
NgoMIV GCCGGC 1 cut(s) 224
NlaIII CATG 1 cut(s) 440
NlaIV GGNNCC 2 cut(s) 138, 564
NmuCI GTSAC 1 cut(s) 205
PcsI WCGNNNNNNNCGW 1 cut(s) 245
PctI GAATGC 1 cut(s) 547
PdiI GCCGGC 1 cut(s) 226
PfeI GAWTC 3 cut(s) 421, 725, 824
PflFI GACNNNGTC 1 cut(s) 93
PflMI CCANNNNNTGG 1 cut(s) 644
PkrI GCNGC 4 cut(s) 223, 244, 435, 820
PleI GAGTC 3 cut(s) 471, 481, 1073
PpsI GAGTC 3 cut(s) 471, 481, 1073
PspN4I GGNNCC 2 cut(s) 138, 564
PsyI GACNNNGTC 1 cut(s) 93
RsaI GTAC 1 cut(s) 564
RsaNI GTAC 1 cut(s) 563
SaqAI TTAA 2 cut(s) 300, 429
SatI GCNGC 4 cut(s) 222, 243, 434, 819
Sau3AI GATC 2 cut(s) 273, 685
SchI GAGTC 3 cut(s) 472, 482, 1073
SduI GDGCHC 3 cut(s) 261, 369, 808
SfaNI GCATC 2 cut(s) 1075, 1081
SmlI CTYRAG 2 cut(s) 233, 312
SmoI CTYRAG 2 cut(s) 233, 312
Sse9I AATT 8 cut(s) 17, 39, 121, 168, 301, 500, 1005, 1036
SsiI CCGC 8 cut(s) 222, 242, 289, 601, 605, 821, 881, 1045
TaaI ACNGT 2 cut(s) 778, 905
TaqI TCGA 3 cut(s) 107, 216, 471
TasI AATT 8 cut(s) 17, 39, 121, 168, 301, 500, 1005, 1036
TauI GCSGC 2 cut(s) 224, 245
TfiI GAWTC 3 cut(s) 421, 725, 824
Tru1I TTAA 2 cut(s) 300, 429
Tru9I TTAA 2 cut(s) 300, 429
TseFI GTSAC 1 cut(s) 205
TseI GCWGC 2 cut(s) 433, 818
Tsp45I GTSAC 1 cut(s) 205
TspDTI ATGAA 5 cut(s) 73, 434, 536, 1043, 1089
Tth111I GACNNNGTC 1 cut(s) 93
Van91I CCANNNNNTGG 1 cut(s) 644
XapI RAATTY 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.