Rroxscaffold_3G00255180

NYN domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0006197
Physical Location & Seq
Reverse (-)
49447212 .. 49450511
3300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00255180.1

Sequence Viewer

Length: 1242 bp
ATGGTTATACATCTCAAATTTCGCAACTTTTCCTTCCCAATTCAATCCAAAAGGTCAGAAACCCTAAACCCTTTTACGCTATTCATCAGACGTTGTCATTTTCAACCGAACCCACCTTTCAATTCTTCATATATGGCACGACCCAAAATTTCCCAAACCAGTGTTGCAATTTTCTGGGATTTAGAAACCAAACCCCCAAAATCCGTCACGCCGTTCGAGGCCGCCGGCAGGCTCAAGACGGCGGCGTCGTCGTTCGGGCTCGTCAGGCATATGATCGCATACGCCAACCGCCACGCGTTTAATTGTGTTCCTCAAGTTGTGGGGAAGATAAGGAAAGAGAGGAATAGGGTAGTGATTAGGGATGAGCCCAACATTTGTAGGGTATGTGGGAGGAGGTTTTATACTAAAGAGAAGCTTATGAATCATTTTAAACTGCATGAGAGGGAACACATGAAGAGGTTGAGTCAAATCGAGTCGGCGAGAGGGAGTAGGAGGGTGAAATTGGTGGGGAAGTATTCAATGAAGATGGAGAAGTATAAGAATGCTGTGAGGGATGTGATGATACCAAAGGAAGGGAATAGTTTGGTTAGTGAGCTGAAGCGGGCGGGGTTTTGGGTTCGGAGTTTGGCTGATAAGCCACAGGCTGGATTTGTTGCATTGAGAAATGACATTTTGGAGATGATGGATCAAAGGAGGTTTGAGTGTTTGGTGCTTGTTTCGGATGATTCGGATTTTGTGGATGTTGTGATGGAGGCGAGGAGGAGGTGTGTGAAGACAGTTGCTGTGGGGGATTTAGGTGATGGGGCTTTGAAGAGGGCTGCGGATTCAGGGTTTTCTTGGGGGGAGATTTTGTTGGGGAAGGCTAAGAAGGAGGCGGTGGCAGTTGTGGGGAAATGGAAAGACCGTGATATATTGAAGAGATTGGAGTGGAAATACAAGCCAGATGAGGATAGGATGGTGCATAGCTTGGATGGTGGAGTTGATGGTGAGAGTGAGGATGAGGAAATTGGAAGTATTGTTAATGGTATGATTGACAATTGTTTGCGGAGCGATGATACCGGCAATGGTGGGAGCTTGACTCTGATGCTGATGCCATTTCATAACTTGGATGGCGAAGTTGATGGTCAGAGTATGGATGAGGAAATTGGAAGTATTGTTGGTGGGATGAATGACAATTGTTTGCGGAATGATGATACTGGTAAATGGTGGGAGCTTGACTCTGATGCTGATGCCATTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NYN

Protein Analysis

413

Amino Acids

46.9

Weight (kDa)

8.87

Isoelectric Point (pI)

45.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NYN PF01936 193 - 276 4.6e-08 NYN domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 244
AccB7I CCANNNNNTGG 1 cut(s) 644
AccII CGCG 1 cut(s) 296
AciI CCGC 9 cut(s) 222, 242, 289, 601, 605, 821, 875, 1045, 1183
AclWI GGATC 1 cut(s) 693
AcsI RAATTY 2 cut(s) 17, 147
AcuI CTGAAG 1 cut(s) 617
AcyI GRCGYC 1 cut(s) 245
AfiI CCNNNNNNNGG 3 cut(s) 228, 572, 644
AflIII ACRYGT 1 cut(s) 294
AgsI TTSAA 6 cut(s) 44, 104, 121, 519, 811, 916
AluBI AGCT 5 cut(s) 415, 595, 966, 1074, 1213
AluI AGCT 5 cut(s) 415, 595, 966, 1074, 1213
AlwI GGATC 1 cut(s) 693
AlwNI CAGNNNCTG 1 cut(s) 782
AoxI GGCC 1 cut(s) 219
ApeKI GCWGC 1 cut(s) 818
ApoI RAATTY 2 cut(s) 17, 147
AsuHPI GGTGA 3 cut(s) 508, 809, 998
BanII GRGCYC 2 cut(s) 261, 369
BbsI GAAGAC 1 cut(s) 779
BbvI GCAGC 1 cut(s) 805
BccI CCATC 9 cut(s) 520, 676, 742, 794, 949, 965, 977, 1103, 1115
BceAI ACGGC 2 cut(s) 196, 255
BisI GCNGC 3 cut(s) 222, 243, 819
BlsI GCNGC 3 cut(s) 223, 244, 820
BmsI GCATC 4 cut(s) 1074, 1080, 1213, 1219
BpiI GAAGAC 1 cut(s) 779
BplI GAGNNNNNCTC 4 cut(s) 1063, 1095, 1202, 1234
BpuEI CTTGAG 2 cut(s) 218, 297
BsaHI GRCGYC 1 cut(s) 245
BsaXI ACNNNNNCTCC 4 cut(s) 751, 781, 836, 866
Bsc4I CCNNNNNNNGG 3 cut(s) 228, 572, 644
Bse118I RCCGGY 2 cut(s) 224, 1058
Bse1I ACTGG 2 cut(s) 159, 1201
Bse3DI GCAATG 1 cut(s) 1069
BseLI CCNNNNNNNGG 3 cut(s) 228, 572, 644
BseMI GCAATG 1 cut(s) 1069
BseNI ACTGG 2 cut(s) 159, 1201
BseRI GAGGAG 3 cut(s) 406, 772, 775
BseXI GCAGC 1 cut(s) 805
Bsh1236I CGCG 1 cut(s) 296
BshFI GGCC 1 cut(s) 221
BsiSI CCGG 2 cut(s) 225, 1059
BslI CCNNNNNNNGG 3 cut(s) 228, 572, 644
BsmI GAATGC 1 cut(s) 547
BsnI GGCC 1 cut(s) 221
Bsp1286I GDGCHC 2 cut(s) 261, 369
Bsp143I GATC 2 cut(s) 273, 685
BspACI CCGC 9 cut(s) 222, 242, 289, 601, 605, 821, 875, 1045, 1183
BspANI GGCC 1 cut(s) 221
BspFNI CGCG 1 cut(s) 296
BspPI GGATC 1 cut(s) 693
BsrDI GCAATG 1 cut(s) 1069
BsrFI RCCGGY 2 cut(s) 224, 1058
BsrI ACTGG 2 cut(s) 159, 1201
BssAI RCCGGY 2 cut(s) 224, 1058
BssMI GATC 2 cut(s) 273, 685
BssNI GRCGYC 1 cut(s) 245
Bst4CI ACNGT 2 cut(s) 778, 905
Bst6I CTCTTC 3 cut(s) 449, 806, 911
BstACI GRCGYC 1 cut(s) 245
BstC8I GCNNGC 3 cut(s) 226, 230, 603
BstDEI CTNAG 1 cut(s) 864
BstFNI CGCG 1 cut(s) 296
BstKTI GATC 2 cut(s) 276, 688
BstMBI GATC 2 cut(s) 273, 685
BstMWI GCNNNNNNNGC 1 cut(s) 265
BstUI CGCG 1 cut(s) 296
BstV1I GCAGC 1 cut(s) 805
BstV2I GAAGAC 1 cut(s) 779
BsuRI GGCC 1 cut(s) 221
BtgZI GCGATG 1 cut(s) 1065
BtsIMutI CAGTG 1 cut(s) 166
Cac8I GCNNGC 3 cut(s) 226, 230, 603
CaiI CAGNNNCTG 1 cut(s) 782
Cfr10I RCCGGY 2 cut(s) 224, 1058
CseI GACGC 1 cut(s) 234
CviAII CATG 2 cut(s) 437, 451
DdeI CTNAG 1 cut(s) 864
DpnI GATC 2 cut(s) 275, 687
DpnII GATC 2 cut(s) 273, 685
DraI TTTAAA 1 cut(s) 430
DrdI GACNNNNNNGTC 1 cut(s) 244
DseDI GACNNNNNNGTC 1 cut(s) 244
Eam1104I CTCTTC 3 cut(s) 449, 806, 911
EarI CTCTTC 3 cut(s) 449, 806, 911
Eco24I GRGCYC 2 cut(s) 261, 369
Eco57I CTGAAG 1 cut(s) 617
EcoT38I GRGCYC 2 cut(s) 261, 369
FaeI CATG 2 cut(s) 440, 454
FalI AAGNNNNNCTT 2 cut(s) 399, 431
FatI CATG 2 cut(s) 436, 450
FauI CCCGC 2 cut(s) 594, 598
FauNDI CATATG 1 cut(s) 270
Fnu4HI GCNGC 3 cut(s) 222, 243, 819
FriOI GRGCYC 2 cut(s) 261, 369
Fsp4HI GCNGC 3 cut(s) 222, 243, 819
GluI GCNGC 3 cut(s) 222, 243, 819
HaeIII GGCC 1 cut(s) 221
HapII CCGG 2 cut(s) 225, 1059
HgaI GACGC 1 cut(s) 234
Hin1I GRCGYC 1 cut(s) 245
Hin1II CATG 2 cut(s) 440, 454
HindIII AAGCTT 1 cut(s) 413
HinfI GANTC 7 cut(s) 421, 463, 473, 725, 824, 1078, 1217
HpaII CCGG 2 cut(s) 225, 1059
HphI GGTGA 3 cut(s) 508, 809, 998
Hpy188I TCNGA 8 cut(s) 58, 89, 621, 721, 730, 1083, 1128, 1222
Hpy188III TCNNGA 1 cut(s) 235
Hpy99I CGWCG 2 cut(s) 250, 253
HpyAV CCTTC 4 cut(s) 43, 566, 853, 862
HpyCH4III ACNGT 2 cut(s) 778, 905
HpyCH4IV ACGT 1 cut(s) 91
HpyCH4V TGCA 4 cut(s) 167, 436, 656, 961
HpyF10VI GCNNNNNNNGC 1 cut(s) 265
HpyF3I CTNAG 1 cut(s) 864
HpySE526I ACGT 1 cut(s) 91
Hsp92I GRCGYC 1 cut(s) 245
Hsp92II CATG 2 cut(s) 440, 454
KroI GCCGGC 1 cut(s) 224
KroNI GCCGGC 1 cut(s) 226
Kzo9I GATC 2 cut(s) 273, 685
LmnI GCTCC 3 cut(s) 1047, 1071, 1210
Lsp1109I GCAGC 1 cut(s) 805
LweI GCATC 4 cut(s) 1074, 1080, 1213, 1219
MaeII ACGT 1 cut(s) 91
MaeIII GTNAC 1 cut(s) 205
MalI GATC 2 cut(s) 275, 687
MboI GATC 2 cut(s) 273, 685
MboII GAAGA 7 cut(s) 117, 337, 466, 535, 784, 823, 928
MfeI CAATTG 2 cut(s) 1036, 1174
MhlI GDGCHC 2 cut(s) 261, 369
MluI ACGCGT 1 cut(s) 294
MlyI GAGTC 4 cut(s) 472, 482, 1072, 1211
MroNI GCCGGC 1 cut(s) 224
MseI TTAA 3 cut(s) 300, 429, 1020
MspI CCGG 2 cut(s) 225, 1059
MunI CAATTG 2 cut(s) 1036, 1174
Mva1269I GAATGC 1 cut(s) 547
MvnI CGCG 1 cut(s) 296
MwoI GCNNNNNNNGC 1 cut(s) 265
NaeI GCCGGC 1 cut(s) 226
NdeI CATATG 1 cut(s) 270
NdeII GATC 2 cut(s) 273, 685
NgoMIV GCCGGC 1 cut(s) 224
NlaIII CATG 2 cut(s) 440, 454
NmuCI GTSAC 1 cut(s) 205
PcsI WCGNNNNNNNCGW 1 cut(s) 245
PctI GAATGC 1 cut(s) 547
PdiI GCCGGC 1 cut(s) 226
PfeI GAWTC 3 cut(s) 421, 725, 824
PflFI GACNNNGTC 1 cut(s) 93
PflMI CCANNNNNTGG 1 cut(s) 644
PkrI GCNGC 3 cut(s) 223, 244, 820
PleI GAGTC 4 cut(s) 471, 481, 1072, 1211
PpsI GAGTC 4 cut(s) 471, 481, 1072, 1211
PstNI CAGNNNCTG 1 cut(s) 782
PsyI GACNNNGTC 1 cut(s) 93
SaqAI TTAA 3 cut(s) 300, 429, 1020
SatI GCNGC 3 cut(s) 222, 243, 819
Sau3AI GATC 2 cut(s) 273, 685
SchI GAGTC 4 cut(s) 472, 482, 1072, 1211
SduI GDGCHC 2 cut(s) 261, 369
SfaNI GCATC 4 cut(s) 1074, 1080, 1213, 1219
SmlI CTYRAG 2 cut(s) 233, 312
SmoI CTYRAG 2 cut(s) 233, 312
SsiI CCGC 9 cut(s) 222, 242, 289, 601, 605, 821, 875, 1045, 1183
TaaI ACNGT 2 cut(s) 778, 905
TaiI ACGT 1 cut(s) 94
TaqI TCGA 2 cut(s) 216, 471
TauI GCSGC 2 cut(s) 224, 245
TfiI GAWTC 3 cut(s) 421, 725, 824
Tru1I TTAA 3 cut(s) 300, 429, 1020
Tru9I TTAA 3 cut(s) 300, 429, 1020
TscAI CASTG 1 cut(s) 166
TseFI GTSAC 1 cut(s) 205
TseI GCWGC 1 cut(s) 818
Tsp45I GTSAC 1 cut(s) 205
TspDTI ATGAA 8 cut(s) 73, 117, 434, 467, 536, 1088, 1181, 1227
TspGWI ACGGA 1 cut(s) 193
TspRI CASTG 1 cut(s) 166
Tth111I GACNNNGTC 1 cut(s) 93
Van91I CCANNNNNTGG 1 cut(s) 644
XapI RAATTY 2 cut(s) 17, 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.