RLG00000003660

NYN domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0006197
Physical Location & Seq
Reverse (-)
51397088 .. 51398307
1220 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003660

Sequence Viewer

Length: 1092 bp
ATGGTTATACATCTCAAATTTCGCAACTTTTCCTTCCCAATTCAATCGAAAAGGTCAGAAACCCTAAATCCCTTTACGCTGTTCATTAGACATTGTCATTTTCAATCGAACCCACCTTTCAATTCTCCATATCCGGCACCACCCAAAACTTCCCAAACCAGCGTTGCAATTTTCTGGGATTTAGAAACCAAACCCCCAAAATCCGTCACTCCGTTCGAGGCCGCCGGCAGGCTCAAGACGGCGGCTTCGTCATTCGGGCTCGTCAGGCATATGATCGCATACGCCAACCGCCACGCGTTTAATTGTGTTCCTCAAGTTGTGGGGAAGATAAGGAAAGAGAGGAATAGGGTAGTGATTAGGGATGAGCCCAACATTTGTAGGGTATGTGGGAGGAGGTTTTATACTAAAGAGAAGCTTATGAATCATTTTAAGCTGCATGAGAGGGAACACATGAAGAGGTTGAGTCAAATCGAGTCGGCGAGAGGGAGTAGGAGGGTGAAATTGGTGGGGAAGTATTCAATGAAGATGGAGAAGTATAAGAATGCTGTGAGGGATGTGATGATACCAAAGGAAGGGAATAGTTTGGTTAGTGAGCTGAAGCGGGCGGGGTTTTGGGTTCGGAGTTTGGCTGATAAGCCACAGGCTGGATTTGTTGCATTGAGAAATGACATTTTGGAGATGATGGATCAAAGGAGGTTTGAATGTTTGGTGCTTGTTTCGGATGATTCGGATTTTGTGGATATTGTGATGGAGGCGAGGAGGAGATGTGTGAAGACGGTTGCTGTGGGGGATTTAGGTGATGGGGCTCTGAAGAGGGCTGCGGATTCAGGGTTTTCTTGGGGGGAGATTTTGTTGGGGAAGGCTAAGAAGGAGGCAGTGGCGGTTGTGGGGAAGTGGAAAGACCGTGATATATTGAAGAGATTGGAGTGGAAATACAAGCCAGATGAGGATAGGAGGGTGCATAACTTGGATGGTGAGAGTGAGGATGGGGAAATTGGAAGTATTGTTGGTGGGATGAATGACAATTGTTTGCAGAGCGATGATACCGGCAAATGGTGGGAGCTTGACTCTGATGCTGGTGCCATTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NYN

Protein Analysis

364

Amino Acids

41.45

Weight (kDa)

9.54

Isoelectric Point (pI)

47.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NYN PF01936 193 - 276 5.1e-08 NYN domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 136, 1079
AccB7I CCANNNNNTGG 1 cut(s) 644
AccII CGCG 1 cut(s) 296
AciI CCGC 7 cut(s) 222, 242, 289, 601, 605, 821, 881
AclWI GGATC 1 cut(s) 693
AcsI RAATTY 1 cut(s) 17
AcuI CTGAAG 2 cut(s) 617, 830
AfiI CCNNNNNNNGG 4 cut(s) 228, 572, 644, 1053
AflIII ACRYGT 1 cut(s) 294
AgsI TTSAA 6 cut(s) 44, 104, 121, 519, 701, 916
AluBI AGCT 4 cut(s) 415, 433, 595, 1063
AluI AGCT 4 cut(s) 415, 433, 595, 1063
AlwI GGATC 1 cut(s) 693
AoxI GGCC 1 cut(s) 219
ApeKI GCWGC 2 cut(s) 433, 818
ApoI RAATTY 1 cut(s) 17
ArsI GACNNNNNNTTYG 2 cut(s) 229, 261
AsuHPI GGTGA 3 cut(s) 508, 809, 986
BanI GGYRCC 2 cut(s) 136, 1079
BanII GRGCYC 3 cut(s) 261, 369, 808
BbsI GAAGAC 1 cut(s) 779
BbvI GCAGC 2 cut(s) 420, 805
BccI CCATC 6 cut(s) 520, 676, 742, 794, 965, 980
BceAI ACGGC 1 cut(s) 255
BisI GCNGC 4 cut(s) 222, 243, 434, 819
BlsI GCNGC 4 cut(s) 223, 244, 435, 820
BmiI GGNNCC 2 cut(s) 138, 1081
BmsI GCATC 1 cut(s) 1063
BpiI GAAGAC 1 cut(s) 779
BplI GAGNNNNNCTC 2 cut(s) 1052, 1084
BpuEI CTTGAG 2 cut(s) 218, 297
BsaXI ACNNNNNCTCC 4 cut(s) 751, 781, 836, 866
Bsc4I CCNNNNNNNGG 4 cut(s) 228, 572, 644, 1053
Bse118I RCCGGY 2 cut(s) 224, 1046
BseGI GGATG 6 cut(s) 367, 559, 727, 976, 991, 1020
BseLI CCNNNNNNNGG 4 cut(s) 228, 572, 644, 1053
BseRI GAGGAG 3 cut(s) 406, 772, 775
BseXI GCAGC 2 cut(s) 420, 805
Bsh1236I CGCG 1 cut(s) 296
BshFI GGCC 1 cut(s) 221
BshNI GGYRCC 2 cut(s) 136, 1079
BsiSI CCGG 3 cut(s) 134, 225, 1047
BslI CCNNNNNNNGG 4 cut(s) 228, 572, 644, 1053
BsmI GAATGC 1 cut(s) 547
BsnI GGCC 1 cut(s) 221
Bsp1286I GDGCHC 3 cut(s) 261, 369, 808
Bsp143I GATC 2 cut(s) 273, 685
BspACI CCGC 7 cut(s) 222, 242, 289, 601, 605, 821, 881
BspANI GGCC 1 cut(s) 221
BspFNI CGCG 1 cut(s) 296
BspLI GGNNCC 2 cut(s) 138, 1081
BspPI GGATC 1 cut(s) 693
BspT107I GGYRCC 2 cut(s) 136, 1079
BsrFI RCCGGY 2 cut(s) 224, 1046
BssAI RCCGGY 2 cut(s) 224, 1046
BssMI GATC 2 cut(s) 273, 685
Bst4CI ACNGT 2 cut(s) 778, 905
Bst6I CTCTTC 3 cut(s) 449, 806, 911
BstC8I GCNNGC 3 cut(s) 226, 230, 603
BstDEI CTNAG 1 cut(s) 864
BstF5I GGATG 6 cut(s) 367, 559, 727, 976, 991, 1020
BstFNI CGCG 1 cut(s) 296
BstKTI GATC 2 cut(s) 276, 688
BstMBI GATC 2 cut(s) 273, 685
BstMWI GCNNNNNNNGC 1 cut(s) 265
BstUI CGCG 1 cut(s) 296
BstV1I GCAGC 2 cut(s) 420, 805
BstV2I GAAGAC 1 cut(s) 779
BsuRI GGCC 1 cut(s) 221
BtgZI GCGATG 1 cut(s) 1053
BtsCI GGATG 6 cut(s) 367, 559, 727, 976, 991, 1020
BtsI GCAGTG 1 cut(s) 882
BtsIMutI CAGTG 1 cut(s) 882
Cac8I GCNNGC 3 cut(s) 226, 230, 603
Cfr10I RCCGGY 2 cut(s) 224, 1046
CviAII CATG 2 cut(s) 437, 451
DdeI CTNAG 1 cut(s) 864
DpnI GATC 2 cut(s) 275, 687
DpnII GATC 2 cut(s) 273, 685
Eam1104I CTCTTC 3 cut(s) 449, 806, 911
EarI CTCTTC 3 cut(s) 449, 806, 911
Eco24I GRGCYC 3 cut(s) 261, 369, 808
Eco57I CTGAAG 2 cut(s) 617, 830
EcoT38I GRGCYC 3 cut(s) 261, 369, 808
FaeI CATG 2 cut(s) 440, 454
FalI AAGNNNNNCTT 2 cut(s) 399, 431
FatI CATG 2 cut(s) 436, 450
FauI CCCGC 2 cut(s) 594, 598
FauNDI CATATG 1 cut(s) 270
Fnu4HI GCNGC 4 cut(s) 222, 243, 434, 819
FokI GGATG 6 cut(s) 374, 566, 734, 983, 998, 1027
FriOI GRGCYC 3 cut(s) 261, 369, 808
Fsp4HI GCNGC 4 cut(s) 222, 243, 434, 819
GluI GCNGC 4 cut(s) 222, 243, 434, 819
HaeIII GGCC 1 cut(s) 221
HapII CCGG 3 cut(s) 134, 225, 1047
Hin1II CATG 2 cut(s) 440, 454
HindIII AAGCTT 1 cut(s) 413
HinfI GANTC 6 cut(s) 421, 463, 473, 725, 824, 1067
HpaII CCGG 3 cut(s) 134, 225, 1047
HphI GGTGA 3 cut(s) 508, 809, 986
Hpy188I TCNGA 6 cut(s) 58, 621, 721, 730, 810, 1072
Hpy188III TCNNGA 1 cut(s) 235
HpyAV CCTTC 4 cut(s) 43, 566, 853, 862
HpyCH4III ACNGT 2 cut(s) 778, 905
HpyCH4V TGCA 5 cut(s) 167, 436, 656, 961, 1033
HpyF10VI GCNNNNNNNGC 1 cut(s) 265
HpyF3I CTNAG 1 cut(s) 864
Hsp92II CATG 2 cut(s) 440, 454
KroI GCCGGC 1 cut(s) 224
KroNI GCCGGC 1 cut(s) 226
Kzo9I GATC 2 cut(s) 273, 685
LmnI GCTCC 1 cut(s) 1060
Lsp1109I GCAGC 2 cut(s) 420, 805
LweI GCATC 1 cut(s) 1063
MaeIII GTNAC 1 cut(s) 205
MalI GATC 2 cut(s) 275, 687
MboI GATC 2 cut(s) 273, 685
MboII GAAGA 6 cut(s) 337, 466, 535, 784, 823, 928
MfeI CAATTG 1 cut(s) 1024
MhlI GDGCHC 3 cut(s) 261, 369, 808
MluCI AATT 8 cut(s) 17, 39, 121, 168, 301, 500, 993, 1024
MluI ACGCGT 1 cut(s) 294
MlyI GAGTC 3 cut(s) 472, 482, 1061
MroNI GCCGGC 1 cut(s) 224
MseI TTAA 2 cut(s) 300, 429
MspI CCGG 3 cut(s) 134, 225, 1047
MunI CAATTG 1 cut(s) 1024
Mva1269I GAATGC 1 cut(s) 547
MvnI CGCG 1 cut(s) 296
MwoI GCNNNNNNNGC 1 cut(s) 265
NaeI GCCGGC 1 cut(s) 226
NdeI CATATG 1 cut(s) 270
NdeII GATC 2 cut(s) 273, 685
NgoMIV GCCGGC 1 cut(s) 224
NlaIII CATG 2 cut(s) 440, 454
NlaIV GGNNCC 2 cut(s) 138, 1081
NmuCI GTSAC 1 cut(s) 205
PcsI WCGNNNNNNNCGW 1 cut(s) 245
PctI GAATGC 1 cut(s) 547
PdiI GCCGGC 1 cut(s) 226
PfeI GAWTC 3 cut(s) 421, 725, 824
PflFI GACNNNGTC 1 cut(s) 93
PflMI CCANNNNNTGG 1 cut(s) 644
PkrI GCNGC 4 cut(s) 223, 244, 435, 820
PleI GAGTC 3 cut(s) 471, 481, 1061
PpsI GAGTC 3 cut(s) 471, 481, 1061
PspN4I GGNNCC 2 cut(s) 138, 1081
PsyI GACNNNGTC 1 cut(s) 93
SaqAI TTAA 2 cut(s) 300, 429
SatI GCNGC 4 cut(s) 222, 243, 434, 819
Sau3AI GATC 2 cut(s) 273, 685
SchI GAGTC 3 cut(s) 472, 482, 1061
SduI GDGCHC 3 cut(s) 261, 369, 808
SfaNI GCATC 1 cut(s) 1063
SmlI CTYRAG 2 cut(s) 233, 312
SmoI CTYRAG 2 cut(s) 233, 312
Sse9I AATT 8 cut(s) 17, 39, 121, 168, 301, 500, 993, 1024
SsiI CCGC 7 cut(s) 222, 242, 289, 601, 605, 821, 881
TaaI ACNGT 2 cut(s) 778, 905
TaqI TCGA 4 cut(s) 47, 107, 216, 471
TasI AATT 8 cut(s) 17, 39, 121, 168, 301, 500, 993, 1024
TauI GCSGC 2 cut(s) 224, 245
TfiI GAWTC 3 cut(s) 421, 725, 824
Tru1I TTAA 2 cut(s) 300, 429
Tru9I TTAA 2 cut(s) 300, 429
TscAI CASTG 1 cut(s) 882
TseFI GTSAC 1 cut(s) 205
TseI GCWGC 2 cut(s) 433, 818
Tsp45I GTSAC 1 cut(s) 205
TspDTI ATGAA 6 cut(s) 73, 434, 467, 536, 1031, 1077
TspGWI ACGGA 2 cut(s) 193, 201
TspRI CASTG 1 cut(s) 882
Tth111I GACNNNGTC 1 cut(s) 93
Van91I CCANNNNNTGG 1 cut(s) 644
XapI RAATTY 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.