Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009256

Physical Location & Seq

Genomic Coordinates Reverse (-)

7814888 .. 7816144

Gene Structure 1257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G13450.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGAAGAGGGTCGTAGAGGATCATCTTCAACACCACAGTCTCGTAAGATCATGGTGATCGCTGATCCGACACGTGAATCTGCAGCAGCTCTTCAATACGCTCTTTCACACGCCGTGCTCGAGCAAGACGAGCTTATTCTTGTACATATTGAAAACTCTGGTGGTTCTTGGAAAAATGCTTTCTCAAGTTTTTTGAGATTACCAAGCTCAATCTCTTCCTCTAGCAGCGGCTCCTCTCCCGCTTCTAACGGTACCACAACCGCTTCTAACGCCGCAGCAAACGCCTTAGCCTCGGAGATTGGTCAAGGAGATGGTAACTTCTTGGAACAAATGAAACGAATATGTGAAATCGCTCAGCCAAAGGTGCGTGTACACACCGAGTGTATAGCTATAGATGGCGTCAAAGCTACAGCGATTCTTCTTCATGGTGACAAGCTTGGCGTTGATGTTATAATCATAGGCCAACGCCGGACTATCTCATCCTCCCTTCTAGGAACTAGGAGGCCTGGAGGGTCACTAAGAGGTTCCAAAGGAGTAGACACAGCGGAATATTTAATCGAGAACAGCAAATGCACTTGTGTTGGTGTAACGAAGAAAGGTCAAAATGGAGGATATGTTTTAAACACAAAGACACATAAGAACTTCTGGCTCTTGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

219

Amino Acids

23.16

Weight (kDa)

9.12

Isoelectric Point (pI)

53.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13450 AT4G13450
fragaria_vesca	FvH4_3g38130 FvH4_4g05010
malus_domestica	MD03G1076500.v1.1 MD11G1081000.v1.1 MD13G1223300.v1.1 MD16G1227600.v1.1
prunus_persica	Prupe.1G050300_v2.0.a1 Prupe.6G061400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0395821 RchiOBHm_Chr5g0068561
rosa_multiflora	Rmu_sc0000313.1_g000010 Rmu_sc0003221.1_g000002
rosa_roxburghii	Rroxscaffold_5G00340660
rosa_rugosa	Rorug03G0354000 Rorug05G0390800
rosa_samantha	Rh4DG057200 Rh5AG449100 Rh5BG467200
rosa_wichuraiana	Rw4G005150 Rw5G041930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	452
Acc65I	GGTACC	1 cut(s)	251
AccB1I	GGYRCC	1 cut(s)	251
AccI	GTMKAC	1 cut(s)	537
AciI	CCGC	5 cut(s)	228, 240, 261, 273, 545
AclWI	GGATC	2 cut(s)	28, 59
AcvI	CACGTG	1 cut(s)	74
AcyI	GRCGYC	1 cut(s)	399
AdeI	CACNNNGTG	2 cut(s)	115, 381
AfaI	GTAC	3 cut(s)	144, 253, 372
AflIII	ACRYGT	1 cut(s)	71
AgsI	TTSAA	3 cut(s)	30, 95, 152
AjnI	CCWGG	1 cut(s)	505
AluBI	AGCT	6 cut(s)	89, 133, 207, 389, 407, 436
AluI	AGCT	6 cut(s)	89, 133, 207, 389, 407, 436
Alw21I	GWGCWC	1 cut(s)	120
Alw26I	GTCTC	1 cut(s)	45
AlwI	GGATC	2 cut(s)	28, 59
Ama87I	CYCGRG	1 cut(s)	119
AoxI	GGCC	2 cut(s)	460, 503
ApeKI	GCWGC	4 cut(s)	83, 86, 225, 275
Asp718I	GGTACC	1 cut(s)	251
AsuHPI	GGTGA	2 cut(s)	67, 440
AvaI	CYCGRG	1 cut(s)	119
BanI	GGYRCC	1 cut(s)	251
BbrPI	CACGTG	1 cut(s)	74
Bbv12I	GWGCWC	1 cut(s)	120
BbvI	GCAGC	4 cut(s)	95, 98, 237, 287
BccI	CCATC	2 cut(s)	305, 389
BceAI	ACGGC	1 cut(s)	98
BciT130I	CCWGG	1 cut(s)	507
BcoDI	GTCTC	1 cut(s)	45
BfaI	CTAG	3 cut(s)	222, 491, 498
BfmI	CTRYAG	3 cut(s)	81, 390, 408
BisI	GCNGC	6 cut(s)	84, 87, 226, 229, 273, 276
BlpI	GCTNAGC	1 cut(s)	354
BlsI	GCNGC	6 cut(s)	85, 88, 227, 230, 274, 277
Bme1390I	CCNGG	1 cut(s)	507
BmeT110I	CYCGRG	1 cut(s)	119
BmiI	GGNNCC	3 cut(s)	232, 253, 526
BmrFI	CCNGG	1 cut(s)	507
BpmI	CTGGAG	1 cut(s)	528
Bpu10I	CCTNAGC	1 cut(s)	286
Bpu1102I	GCTNAGC	1 cut(s)	354
BpuEI	CTTGAG	1 cut(s)	169
BsaAI	YACGTR	1 cut(s)	74
BsaHI	GRCGYC	1 cut(s)	399
BsaJI	CCNNGG	1 cut(s)	291
BsaXI	ACNNNNNCTCC	2 cut(s)	600, 630
BseBI	CCWGG	1 cut(s)	507
BseDI	CCNNGG	1 cut(s)	291
BseGI	GGATG	1 cut(s)	479
BseMII	CTCAG	1 cut(s)	368
BseRI	GAGGAG	1 cut(s)	223
BseXI	GCAGC	4 cut(s)	95, 98, 237, 287
BshFI	GGCC	2 cut(s)	462, 505
BshNI	GGYRCC	1 cut(s)	251
BsiHKAI	GWGCWC	1 cut(s)	120
BsiHKCI	CYCGRG	1 cut(s)	119
BsiSI	CCGG	1 cut(s)	469
BsmAI	GTCTC	1 cut(s)	45
BsnI	GGCC	2 cut(s)	462, 505
BsoBI	CYCGRG	1 cut(s)	119
Bsp1286I	GDGCHC	1 cut(s)	120
Bsp1407I	TGTACA	2 cut(s)	142, 370
Bsp143I	GATC	4 cut(s)	20, 48, 57, 64
Bsp1720I	GCTNAGC	1 cut(s)	354
BspACI	CCGC	5 cut(s)	228, 240, 261, 273, 545
BspANI	GGCC	2 cut(s)	462, 505
BspCNI	CTCAG	1 cut(s)	367
BspLI	GGNNCC	3 cut(s)	232, 253, 526
BspMAI	CTGCAG	1 cut(s)	85
BspPI	GGATC	2 cut(s)	28, 59
BspQI	GCTCTTC	1 cut(s)	96
BspT107I	GGYRCC	1 cut(s)	251
BsrGI	TGTACA	2 cut(s)	142, 370
BssECI	CCNNGG	1 cut(s)	291
BssMI	GATC	4 cut(s)	20, 48, 57, 64
BssNI	GRCGYC	1 cut(s)	399
Bst2UI	CCWGG	1 cut(s)	507
Bst4CI	ACNGT	2 cut(s)	39, 251
Bst6I	CTCTTC	2 cut(s)	96, 220
BstACI	GRCGYC	1 cut(s)	399
BstAUI	TGTACA	2 cut(s)	142, 370
BstBAI	YACGTR	1 cut(s)	74
BstDEI	CTNAG	3 cut(s)	286, 354, 518
BstF5I	GGATG	1 cut(s)	479
BstKTI	GATC	4 cut(s)	23, 51, 60, 67
BstMAI	GTCTC	1 cut(s)	45
BstMBI	GATC	4 cut(s)	20, 48, 57, 64
BstMWI	GCNNNNNNNGC	4 cut(s)	130, 269, 281, 364
BstNI	CCWGG	1 cut(s)	507
BstSCI	CCNGG	1 cut(s)	505
BstSFI	CTRYAG	3 cut(s)	81, 390, 408
BstV1I	GCAGC	4 cut(s)	95, 98, 237, 287
BsuRI	GGCC	2 cut(s)	462, 505
BtsCI	GGATG	1 cut(s)	479
CseI	GACGC	1 cut(s)	388
Csp6I	GTAC	3 cut(s)	143, 252, 371
CviAII	CATG	3 cut(s)	52, 425, 657
CviQI	GTAC	3 cut(s)	143, 252, 371
DdeI	CTNAG	3 cut(s)	286, 354, 518
DpnI	GATC	4 cut(s)	22, 50, 59, 66
DpnII	GATC	4 cut(s)	20, 48, 57, 64
DraI	TTTAAA	1 cut(s)	621
DraIII	CACNNNGTG	2 cut(s)	115, 381
Eam1104I	CTCTTC	2 cut(s)	96, 220
EarI	CTCTTC	2 cut(s)	96, 220
Eco147I	AGGCCT	1 cut(s)	505
Eco72I	CACGTG	1 cut(s)	74
Eco88I	CYCGRG	1 cut(s)	119
EcoRII	CCWGG	1 cut(s)	505
FaeI	CATG	3 cut(s)	55, 428, 660
FalI	AAGNNNNNCTT	2 cut(s)	117, 149
FatI	CATG	3 cut(s)	51, 424, 656
FauI	CCCGC	1 cut(s)	247
FblI	GTMKAC	1 cut(s)	537
Fnu4HI	GCNGC	6 cut(s)	84, 87, 226, 229, 273, 276
FokI	GGATG	1 cut(s)	466
Fsp4HI	GCNGC	6 cut(s)	84, 87, 226, 229, 273, 276
FspBI	CTAG	3 cut(s)	222, 491, 498
GluI	GCNGC	6 cut(s)	84, 87, 226, 229, 273, 276
GsuI	CTGGAG	1 cut(s)	528
HaeIII	GGCC	2 cut(s)	462, 505
HapII	CCGG	1 cut(s)	469
HgaI	GACGC	1 cut(s)	388
Hin1I	GRCGYC	1 cut(s)	399
Hin1II	CATG	3 cut(s)	55, 428, 660
HindIII	AAGCTT	1 cut(s)	434
HinfI	GANTC	2 cut(s)	77, 415
HpaII	CCGG	1 cut(s)	469
HphI	GGTGA	2 cut(s)	67, 440
Hpy166II	GTNNAC	3 cut(s)	371, 373, 538
Hpy188I	TCNGA	2 cut(s)	69, 295
Hpy188III	TCNNGA	1 cut(s)	559
Hpy8I	GTNNAC	3 cut(s)	371, 373, 538
HpyAV	CCTTC	1 cut(s)	497
HpyCH4III	ACNGT	2 cut(s)	39, 251
HpyCH4IV	ACGT	1 cut(s)	73
HpyCH4V	TGCA	2 cut(s)	83, 573
HpyF10VI	GCNNNNNNNGC	4 cut(s)	130, 269, 281, 364
HpyF3I	CTNAG	3 cut(s)	286, 354, 518
HpySE526I	ACGT	1 cut(s)	73
Hsp92I	GRCGYC	1 cut(s)	399
Hsp92II	CATG	3 cut(s)	55, 428, 660
KpnI	GGTACC	1 cut(s)	255
Kzo9I	GATC	4 cut(s)	20, 48, 57, 64
LguI	GCTCTTC	1 cut(s)	96
LmnI	GCTCC	1 cut(s)	236
LpnPI	CCDG	5 cut(s)	144, 482, 492, 519, 631
Lsp1109I	GCAGC	4 cut(s)	95, 98, 237, 287
MaeI	CTAG	3 cut(s)	222, 491, 498
MaeII	ACGT	1 cut(s)	73
MaeIII	GTNAC	4 cut(s)	314, 428, 513, 586
MalI	GATC	4 cut(s)	22, 50, 59, 66
MboI	GATC	4 cut(s)	20, 48, 57, 64
MboII	GAAGA	7 cut(s)	17, 18, 83, 207, 410, 413, 604
MhlI	GDGCHC	1 cut(s)	120
MmeI	TCCRAC	1 cut(s)	92
MnlI	CCTC	9 cut(s)	11, 229, 244, 301, 493, 495, 503, 515, 602
MseI	TTAA	2 cut(s)	554, 620
MspA1I	CMGCKG	2 cut(s)	228, 545
MspI	CCGG	1 cut(s)	469
MspR9I	CCNGG	1 cut(s)	507
MvaI	CCWGG	1 cut(s)	507
MwoI	GCNNNNNNNGC	4 cut(s)	130, 269, 281, 364
NdeII	GATC	4 cut(s)	20, 48, 57, 64
NlaIII	CATG	3 cut(s)	55, 428, 660
NlaIV	GGNNCC	3 cut(s)	232, 253, 526
NmuCI	GTSAC	2 cut(s)	428, 513
PaeR7I	CTCGAG	1 cut(s)	119
PceI	AGGCCT	1 cut(s)	505
PciSI	GCTCTTC	1 cut(s)	96
PcsI	WCGNNNNNNNCGW	2 cut(s)	117, 126
PfeI	GAWTC	2 cut(s)	77, 415
PkrI	GCNGC	6 cut(s)	85, 88, 227, 230, 274, 277
PmaCI	CACGTG	1 cut(s)	74
PmlI	CACGTG	1 cut(s)	74
Ppu21I	YACGTR	1 cut(s)	74
PsiI	TTATAA	1 cut(s)	452
Psp6I	CCWGG	1 cut(s)	505
PspCI	CACGTG	1 cut(s)	74
PspGI	CCWGG	1 cut(s)	505
PspN4I	GGNNCC	3 cut(s)	232, 253, 526
PspXI	VCTCGAGB	1 cut(s)	119
PstI	CTGCAG	1 cut(s)	85
RsaI	GTAC	3 cut(s)	144, 253, 372
RsaNI	GTAC	3 cut(s)	143, 252, 371
SapI	GCTCTTC	1 cut(s)	96
SaqAI	TTAA	2 cut(s)	554, 620
SatI	GCNGC	6 cut(s)	84, 87, 226, 229, 273, 276
Sau3AI	GATC	4 cut(s)	20, 48, 57, 64
ScrFI	CCNGG	1 cut(s)	507
SduI	GDGCHC	1 cut(s)	120
SfcI	CTRYAG	3 cut(s)	81, 390, 408
Sfr274I	CTCGAG	1 cut(s)	119
SlaI	CTCGAG	1 cut(s)	119
SmlI	CTYRAG	2 cut(s)	119, 184
SmoI	CTYRAG	2 cut(s)	119, 184
SseBI	AGGCCT	1 cut(s)	505
SsiI	CCGC	5 cut(s)	228, 240, 261, 273, 545
SspI	AATATT	1 cut(s)	551
SspMI	CTAG	3 cut(s)	222, 491, 498
StuI	AGGCCT	1 cut(s)	505
StyD4I	CCNGG	1 cut(s)	505
TaaI	ACNGT	2 cut(s)	39, 251
TaiI	ACGT	1 cut(s)	76
TaqI	TCGA	2 cut(s)	120, 558
TatI	WGTACW	2 cut(s)	142, 370
TauI	GCSGC	2 cut(s)	231, 275
TfiI	GAWTC	2 cut(s)	77, 415
Tru1I	TTAA	2 cut(s)	554, 620
Tru9I	TTAA	2 cut(s)	554, 620
TseFI	GTSAC	2 cut(s)	428, 513
TseI	GCWGC	4 cut(s)	83, 86, 225, 275
Tsp45I	GTSAC	2 cut(s)	428, 513
TspDTI	ATGAA	2 cut(s)	347, 413
XhoI	CTCGAG	1 cut(s)	119
XmiI	GTMKAC	1 cut(s)	537
XspI	CTAG	3 cut(s)	222, 491, 498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.