MD11G1081000.v1.1

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0009256
Physical Location & Seq
Reverse (-)
6910653 .. 6911680
1028 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1081000.v1.1.491

Sequence Viewer

Length: 594 bp
ATGGAACGTAAAGCAACTGCACCTCCGCGGCGAGTAATGGTGGTGGCAGATCCAACCCGGGAATCAGCGGGTGCACTCCAATATGCGCTTTCTCATGCAGTTCTTGAACACGATGAATTGATCCTTTTCTTTGTTGAGAACCAAAATACCTGGCGAAACACATTCACGACGTTACTCAAAATACCTAGCATCGCCTCCGCGGCCATCGCTACAATGTCCTTTGAAGGAACCTTAGAGGAGGACGTGGATTTTCTTGAAGAAATGAAGAATGTATGCGAACGTGTACAACCAAAACTGCGTGTGCGTGTGGAGAGGGTGGCAATGGAGGAAGGCAGAGACAAAGCAAACACTATTCTACATCAAAGCGATGTTCTTGGGGTTGATATCATAGTTATAGGGCAACGAAGGAAAATTTCGATGGATATTTTAGGATCATATACGTGGCCTGGAGGGCGAGGGGTAAAGGCGATAGACACAGCGGACTACTTGATCGAAAATAGCAAACGAACTTGTGTTGCAGTACAAAAAAAGGGGTTAGATGGAGGCTACCTTCTCAACTCAAGAACCCTAAAGAATTTCTGGCTTCTGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

198

Amino Acids

22.12

Weight (kDa)

6.85

Isoelectric Point (pI)

30.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 28, 200
AciI CCGC 6 cut(s) 26, 28, 68, 198, 200, 479
AclWI GGATC 3 cut(s) 44, 115, 439
AcoI YGGCCR 1 cut(s) 201
AcsI RAATTY 2 cut(s) 411, 574
AfaI GTAC 2 cut(s) 285, 522
AflIII ACRYGT 1 cut(s) 280
AgsI TTSAA 3 cut(s) 107, 224, 257
AjiI CACGTC 1 cut(s) 244
AjnI CCWGG 2 cut(s) 149, 445
Alw21I GWGCWC 1 cut(s) 76
Alw26I GTCTC 1 cut(s) 330
Alw44I GTGCAC 1 cut(s) 72
AlwI GGATC 3 cut(s) 44, 115, 439
Ama87I CYCGRG 1 cut(s) 57
AoxI GGCC 2 cut(s) 201, 443
ApaLI GTGCAC 1 cut(s) 72
ApoI RAATTY 2 cut(s) 411, 574
AspLEI GCGC 1 cut(s) 88
AsuC2I CCSGG 2 cut(s) 58, 59
AvaI CYCGRG 1 cut(s) 57
BaeGI GKGCMC 1 cut(s) 76
Bbv12I GWGCWC 1 cut(s) 76
BccI CCATC 3 cut(s) 212, 412, 533
BciT130I CCWGG 2 cut(s) 151, 447
BcnI CCSGG 2 cut(s) 58, 59
BcoDI GTCTC 1 cut(s) 330
BfaI CTAG 1 cut(s) 186
BglI GCCNNNNNGGC 2 cut(s) 200, 451
BisI GCNGC 2 cut(s) 29, 201
BlsI GCNGC 2 cut(s) 30, 202
Bme1390I CCNGG 4 cut(s) 58, 59, 151, 447
BmeT110I CYCGRG 1 cut(s) 57
BmgBI CACGTC 1 cut(s) 244
BmiI GGNNCC 1 cut(s) 229
BmrFI CCNGG 4 cut(s) 58, 59, 151, 447
BmsI GCATC 1 cut(s) 198
BpmI CTGGAG 1 cut(s) 468
BpuEI CTTGAG 1 cut(s) 544
BpuMI CCSGG 2 cut(s) 58, 59
BsaAI YACGTR 1 cut(s) 441
BsaJI CCNNGG 3 cut(s) 26, 57, 198
BsaXI ACNNNNNCTCC 2 cut(s) 7, 37
Bse3DI GCAATG 1 cut(s) 327
BseBI CCWGG 2 cut(s) 151, 447
BseDI CCNNGG 3 cut(s) 26, 57, 198
BseMI GCAATG 1 cut(s) 327
BseRI GAGGAG 1 cut(s) 251
BseSI GKGCMC 1 cut(s) 76
Bsh1236I CGCG 2 cut(s) 28, 200
BshFI GGCC 2 cut(s) 203, 445
BsiHKAI GWGCWC 1 cut(s) 76
BsiHKCI CYCGRG 1 cut(s) 57
BsiSI CCGG 1 cut(s) 58
BsmAI GTCTC 1 cut(s) 330
BsnI GGCC 2 cut(s) 203, 445
BsoBI CYCGRG 1 cut(s) 57
Bsp1286I GDGCHC 1 cut(s) 76
Bsp1407I TGTACA 1 cut(s) 283
Bsp143I GATC 4 cut(s) 49, 120, 431, 489
BspACI CCGC 6 cut(s) 26, 28, 68, 198, 200, 479
BspANI GGCC 2 cut(s) 203, 445
BspFNI CGCG 2 cut(s) 28, 200
BspLI GGNNCC 1 cut(s) 229
BspPI GGATC 3 cut(s) 44, 115, 439
BsrDI GCAATG 1 cut(s) 327
BsrGI TGTACA 1 cut(s) 283
BssECI CCNNGG 3 cut(s) 26, 57, 198
BssMI GATC 4 cut(s) 49, 120, 431, 489
Bst2UI CCWGG 2 cut(s) 151, 447
BstAUI TGTACA 1 cut(s) 283
BstBAI YACGTR 1 cut(s) 441
BstDEI CTNAG 1 cut(s) 232
BstDSI CCRYGG 2 cut(s) 26, 198
BstFNI CGCG 2 cut(s) 28, 200
BstHHI GCGC 1 cut(s) 88
BstKTI GATC 4 cut(s) 52, 123, 434, 492
BstMAI GTCTC 1 cut(s) 330
BstMBI GATC 4 cut(s) 49, 120, 431, 489
BstMWI GCNNNNNNNGC 3 cut(s) 200, 206, 451
BstNI CCWGG 2 cut(s) 151, 447
BstSCI CCNGG 4 cut(s) 56, 57, 149, 445
BstSLI GKGCMC 1 cut(s) 76
BstUI CGCG 2 cut(s) 28, 200
BstX2I RGATCY 1 cut(s) 49
BstYI RGATCY 1 cut(s) 49
BsuRI GGCC 2 cut(s) 203, 445
BtgI CCRYGG 2 cut(s) 26, 198
BtgZI GCGATG 3 cut(s) 175, 190, 381
BtrI CACGTC 1 cut(s) 244
CfoI GCGC 1 cut(s) 88
Cfr42I CCGCGG 2 cut(s) 29, 201
Cfr9I CCCGGG 1 cut(s) 57
Csp6I GTAC 2 cut(s) 284, 521
CviAII CATG 1 cut(s) 95
CviJI RGCY 5 cut(s) 203, 445, 546, 583, 590
CviKI_1 RGCY 5 cut(s) 203, 445, 546, 583, 590
CviQI GTAC 2 cut(s) 284, 521
DdeI CTNAG 1 cut(s) 232
DpnI GATC 4 cut(s) 51, 122, 433, 491
DpnII GATC 4 cut(s) 49, 120, 431, 489
EaeI YGGCCR 1 cut(s) 201
Eco32I GATATC 1 cut(s) 385
Eco88I CYCGRG 1 cut(s) 57
EcoRII CCWGG 2 cut(s) 149, 445
EcoRV GATATC 1 cut(s) 385
FaeI CATG 1 cut(s) 98
FaiI YATR 7 cut(s) 84, 96, 274, 389, 395, 436, 438
FatI CATG 1 cut(s) 94
FauI CCCGC 1 cut(s) 61
Fnu4HI GCNGC 2 cut(s) 29, 201
Fsp4HI GCNGC 2 cut(s) 29, 201
FspBI CTAG 1 cut(s) 186
GlaI GCGC 1 cut(s) 87
GluI GCNGC 2 cut(s) 29, 201
GsuI CTGGAG 1 cut(s) 468
HaeIII GGCC 2 cut(s) 203, 445
HapII CCGG 1 cut(s) 58
HhaI GCGC 1 cut(s) 88
Hin1II CATG 1 cut(s) 98
Hin6I GCGC 1 cut(s) 86
HinP1I GCGC 1 cut(s) 86
HinfI GANTC 1 cut(s) 62
HpaII CCGG 1 cut(s) 58
Hpy166II GTNNAC 2 cut(s) 74, 284
Hpy188III TCNNGA 4 cut(s) 104, 166, 254, 561
Hpy8I GTNNAC 2 cut(s) 74, 284
Hpy99I CGWCG 1 cut(s) 172
HpyAV CCTTC 4 cut(s) 218, 323, 399, 560
HpyCH4IV ACGT 5 cut(s) 7, 170, 243, 280, 440
HpyCH4V TGCA 4 cut(s) 20, 74, 98, 518
HpyF10VI GCNNNNNNNGC 3 cut(s) 200, 206, 451
HpyF3I CTNAG 1 cut(s) 232
HpySE526I ACGT 5 cut(s) 7, 170, 243, 280, 440
Hsp92II CATG 1 cut(s) 98
HspAI GCGC 1 cut(s) 86
KspI CCGCGG 2 cut(s) 29, 201
Kzo9I GATC 4 cut(s) 49, 120, 431, 489
LpnPI CCDG 7 cut(s) 71, 136, 163, 432, 459, 565, 572
LweI GCATC 1 cut(s) 198
MaeI CTAG 1 cut(s) 186
MaeII ACGT 5 cut(s) 7, 170, 243, 280, 440
MaeIII GTNAC 1 cut(s) 171
MalI GATC 4 cut(s) 51, 122, 433, 491
MboI GATC 4 cut(s) 49, 120, 431, 489
MboII GAAGA 2 cut(s) 269, 277
MflI RGATCY 1 cut(s) 49
MhlI GDGCHC 1 cut(s) 76
MluCI AATT 3 cut(s) 116, 411, 574
MmeI TCCRAC 1 cut(s) 77
MnlI CCTC 9 cut(s) 33, 205, 229, 232, 306, 319, 443, 449, 536
MseI TTAA 1 cut(s) 592
MslI CAYNNNNRTG 1 cut(s) 439
MspA1I CMGCKG 4 cut(s) 28, 68, 200, 479
MspI CCGG 1 cut(s) 58
MspR9I CCNGG 4 cut(s) 58, 59, 151, 447
MvaI CCWGG 2 cut(s) 151, 447
MvnI CGCG 2 cut(s) 28, 200
MwoI GCNNNNNNNGC 3 cut(s) 200, 206, 451
NciI CCSGG 2 cut(s) 58, 59
NdeII GATC 4 cut(s) 49, 120, 431, 489
NlaIII CATG 1 cut(s) 98
NlaIV GGNNCC 1 cut(s) 229
PfeI GAWTC 1 cut(s) 62
PkrI GCNGC 2 cut(s) 30, 202
Ppu21I YACGTR 1 cut(s) 441
Psp6I CCWGG 2 cut(s) 149, 445
PspGI CCWGG 2 cut(s) 149, 445
PspN4I GGNNCC 1 cut(s) 229
PsuI RGATCY 1 cut(s) 49
RsaI GTAC 2 cut(s) 285, 522
RsaNI GTAC 2 cut(s) 284, 521
RseI CAYNNNNRTG 1 cut(s) 439
SacII CCGCGG 2 cut(s) 29, 201
SaqAI TTAA 1 cut(s) 592
SatI GCNGC 2 cut(s) 29, 201
Sau3AI GATC 4 cut(s) 49, 120, 431, 489
ScrFI CCNGG 4 cut(s) 58, 59, 151, 447
SduI GDGCHC 1 cut(s) 76
SfaNI GCATC 1 cut(s) 198
Sfr303I CCGCGG 2 cut(s) 29, 201
SgrBI CCGCGG 2 cut(s) 29, 201
SmaI CCCGGG 1 cut(s) 59
SmiMI CAYNNNNRTG 1 cut(s) 439
SmlI CTYRAG 1 cut(s) 559
SmoI CTYRAG 1 cut(s) 559
Sse9I AATT 3 cut(s) 116, 411, 574
SsiI CCGC 6 cut(s) 26, 28, 68, 198, 200, 479
SspMI CTAG 1 cut(s) 186
StyD4I CCNGG 4 cut(s) 56, 57, 149, 445
TaiI ACGT 5 cut(s) 10, 173, 246, 283, 443
TaqI TCGA 2 cut(s) 416, 492
TasI AATT 3 cut(s) 116, 411, 574
TatI WGTACW 2 cut(s) 283, 520
TauI GCSGC 2 cut(s) 31, 203
TfiI GAWTC 1 cut(s) 62
Tru1I TTAA 1 cut(s) 592
Tru9I TTAA 1 cut(s) 592
TspDTI ATGAA 2 cut(s) 129, 278
TspMI CCCGGG 1 cut(s) 57
VneI GTGCAC 1 cut(s) 72
XapI RAATTY 2 cut(s) 411, 574
XmaI CCCGGG 1 cut(s) 57
XspI CTAG 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.