Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0009256

Physical Location & Seq

Genomic Coordinates Reverse (-)

4263641 .. 4265051

Gene Structure 1411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G061400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGAAGGCCAAGCAACCACGCCTGCACGGCGAGTAATGGTGGTGGCGGATCCAACCCGAGAGTCAGCGAGCGCGCTTCAATATGCGCTCGCTCATGTAGTGCTCGAACACGATGAATTAATCCTCTTCTTTGTCGAGAACCAAAACACGTGGCGAAACACATTCACGACGCTGCTCAAAATACCTAGCATTGCCTCCACGGCCATAGCCACCATGTCCTTGGAAGGGATCAACGCAGACGAGGGCGTGGATTTTCTTAAAGAAATGAAGAATGCATGCAAGCGTGTTAAGCCAAAGCTGAGTGTGCGTGCGGAGAGGATGGGAATGGAAGATGGCAAGGACAAAGCCAACACTATCCTACATCAAAGCGATGCTCTTGGGATTGATATCATAATTATAGGGCAACGGCGGAGAATTTCTATCGAAATCCTAGGAACATATACGTGGCCTGGAGCCGGGCGAGGGACGACTAACAAAGCCATAGACACAGCAGATTATTTGATTGAAAATAGCAAGTGTGCTTGTGTTGCTGTACAGAAAAAGGGCCAGGATAGAGGCTACCTTCTCAACTCAAGAACCCACAAAAACTTCTGGCTTCTGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

202

Amino Acids

22.31

Weight (kDa)

8.76

Isoelectric Point (pI)

32.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13450 AT4G13450
fragaria_vesca	FvH4_3g38130 FvH4_4g05010
malus_domestica	MD03G1076500.v1.1 MD11G1081000.v1.1 MD13G1223300.v1.1 MD16G1227600.v1.1
prunus_persica	Prupe.1G050300_v2.0.a1 Prupe.6G061400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0395821 RchiOBHm_Chr5g0068561
rosa_multiflora	Rmu_sc0000313.1_g000010 Rmu_sc0003221.1_g000002
rosa_roxburghii	Rroxscaffold_5G00340660
rosa_rugosa	Rorug03G0354000 Rorug05G0390800
rosa_samantha	Rh4DG057200 Rh5AG449100 Rh5BG467200
rosa_wichuraiana	Rw4G005150 Rw5G041930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	74
AciI	CCGC	3 cut(s)	47, 311, 409
AclWI	GGATC	3 cut(s)	44, 57, 236
AcoI	YGGCCR	1 cut(s)	201
AcsI	RAATTY	1 cut(s)	414
AcvI	CACGTG	1 cut(s)	150
AfaI	GTAC	1 cut(s)	534
AfiI	CCNNNNNNNGG	3 cut(s)	225, 455, 462
AflIII	ACRYGT	1 cut(s)	147
AgsI	TTSAA	2 cut(s)	80, 506
AjnI	CCWGG	2 cut(s)	448, 546
AluBI	AGCT	1 cut(s)	298
AluI	AGCT	1 cut(s)	298
Alw21I	GWGCWC	1 cut(s)	105
AlwI	GGATC	3 cut(s)	44, 57, 236
Ama87I	CYCGRG	1 cut(s)	57
AoxI	GGCC	4 cut(s)	7, 201, 446, 544
ApeKI	GCWGC	1 cut(s)	172
ApoI	RAATTY	1 cut(s)	414
AseI	ATTAAT	1 cut(s)	119
AspA2I	CCTAGG	1 cut(s)	430
AspLEI	GCGC	3 cut(s)	74, 76, 88
AspS9I	GGNCC	1 cut(s)	544
AsuC2I	CCSGG	1 cut(s)	457
AvaI	CYCGRG	1 cut(s)	57
AvrII	CCTAGG	1 cut(s)	430
BamHI	GGATCC	1 cut(s)	49
BbrPI	CACGTG	1 cut(s)	150
Bbv12I	GWGCWC	1 cut(s)	105
BbvI	GCAGC	1 cut(s)	159
BccI	CCATC	2 cut(s)	313, 326
BceAI	ACGGC	3 cut(s)	44, 216, 422
BciT130I	CCWGG	2 cut(s)	450, 548
BcnI	CCSGG	1 cut(s)	457
BfaI	CTAG	2 cut(s)	186, 431
BglI	GCCNNNNNGGC	2 cut(s)	28, 200
BisI	GCNGC	1 cut(s)	173
BlnI	CCTAGG	1 cut(s)	430
BlsI	GCNGC	1 cut(s)	174
Bme1390I	CCNGG	3 cut(s)	450, 457, 548
BmeT110I	CYCGRG	1 cut(s)	57
BmgT120I	GGNCC	1 cut(s)	544
BmiI	GGNNCC	2 cut(s)	51, 454
BmrFI	CCNGG	3 cut(s)	450, 457, 548
BmsI	GCATC	1 cut(s)	361
BpmI	CTGGAG	1 cut(s)	471
BpuEI	CTTGAG	1 cut(s)	556
BpuMI	CCSGG	1 cut(s)	457
BsaAI	YACGTR	2 cut(s)	150, 444
BsaBI	GATNNNNATC	1 cut(s)	386
BsaJI	CCNNGG	3 cut(s)	198, 219, 430
Bsc4I	CCNNNNNNNGG	3 cut(s)	225, 455, 462
Bse3DI	GCAATG	1 cut(s)	189
Bse8I	GATNNNNATC	1 cut(s)	386
BseBI	CCWGG	2 cut(s)	450, 548
BseDI	CCNNGG	3 cut(s)	198, 219, 430
BseGI	GGATG	1 cut(s)	324
BseJI	GATNNNNATC	1 cut(s)	386
BseLI	CCNNNNNNNGG	3 cut(s)	225, 455, 462
BseMI	GCAATG	1 cut(s)	189
BseMII	CTCAG	1 cut(s)	290
BsePI	GCGCGC	1 cut(s)	72
BseXI	GCAGC	1 cut(s)	159
BsgI	GTGCAG	1 cut(s)	9
Bsh1236I	CGCG	1 cut(s)	74
BshFI	GGCC	4 cut(s)	9, 203, 448, 546
BsiHKAI	GWGCWC	1 cut(s)	105
BsiHKCI	CYCGRG	1 cut(s)	57
BsiSI	CCGG	1 cut(s)	456
BslFI	GGGAC	1 cut(s)	478
BslI	CCNNNNNNNGG	3 cut(s)	225, 455, 462
BsmFI	GGGAC	1 cut(s)	478
BsmI	GAATGC	1 cut(s)	277
BsnI	GGCC	4 cut(s)	9, 203, 448, 546
BsoBI	CYCGRG	1 cut(s)	57
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp1407I	TGTACA	1 cut(s)	532
Bsp143I	GATC	2 cut(s)	49, 228
BspACI	CCGC	3 cut(s)	47, 311, 409
BspANI	GGCC	4 cut(s)	9, 203, 448, 546
BspCNI	CTCAG	1 cut(s)	291
BspFNI	CGCG	1 cut(s)	74
BspLI	GGNNCC	2 cut(s)	51, 454
BspPI	GGATC	3 cut(s)	44, 57, 236
BsrDI	GCAATG	1 cut(s)	189
BsrGI	TGTACA	1 cut(s)	532
BssECI	CCNNGG	3 cut(s)	198, 219, 430
BssHII	GCGCGC	1 cut(s)	72
BssMI	GATC	2 cut(s)	49, 228
BssT1I	CCWWGG	2 cut(s)	219, 430
Bst2UI	CCWGG	2 cut(s)	450, 548
Bst6I	CTCTTC	1 cut(s)	131
BstAUI	TGTACA	1 cut(s)	532
BstBAI	YACGTR	2 cut(s)	150, 444
BstC8I	GCNNGC	7 cut(s)	24, 70, 74, 90, 277, 281, 309
BstDEI	CTNAG	1 cut(s)	299
BstDSI	CCRYGG	1 cut(s)	198
BstF5I	GGATG	1 cut(s)	324
BstFNI	CGCG	1 cut(s)	74
BstHHI	GCGC	3 cut(s)	74, 76, 88
BstKTI	GATC	2 cut(s)	52, 231
BstMBI	GATC	2 cut(s)	49, 228
BstMWI	GCNNNNNNNGC	5 cut(s)	28, 200, 289, 304, 527
BstNI	CCWGG	2 cut(s)	450, 548
BstNSI	RCATGY	1 cut(s)	279
BstSCI	CCNGG	3 cut(s)	448, 455, 546
BstUI	CGCG	1 cut(s)	74
BstV1I	GCAGC	1 cut(s)	159
BstX2I	RGATCY	1 cut(s)	49
BstXI	CCANNNNNNTGG	1 cut(s)	220
BstYI	RGATCY	1 cut(s)	49
BsuRI	GGCC	4 cut(s)	9, 203, 448, 546
BtgI	CCRYGG	1 cut(s)	198
BtgZI	GCGATG	1 cut(s)	384
BtsCI	GGATG	1 cut(s)	324
Cac8I	GCNNGC	7 cut(s)	24, 70, 74, 90, 277, 281, 309
CfoI	GCGC	3 cut(s)	74, 76, 88
Cfr13I	GGNCC	1 cut(s)	544
CseI	GACGC	1 cut(s)	178
Csp6I	GTAC	1 cut(s)	533
CspCI	CAANNNNNGTGG	2 cut(s)	131, 166
CviAII	CATG	3 cut(s)	95, 214, 276
CviQI	GTAC	1 cut(s)	533
DdeI	CTNAG	1 cut(s)	299
DpnI	GATC	2 cut(s)	51, 230
DpnII	GATC	2 cut(s)	49, 228
EaeI	YGGCCR	1 cut(s)	201
Eam1104I	CTCTTC	1 cut(s)	131
EarI	CTCTTC	1 cut(s)	131
EciI	GGCGGA	2 cut(s)	62, 424
Eco130I	CCWWGG	2 cut(s)	219, 430
Eco32I	GATATC	1 cut(s)	388
Eco72I	CACGTG	1 cut(s)	150
Eco88I	CYCGRG	1 cut(s)	57
EcoRII	CCWGG	2 cut(s)	448, 546
EcoRV	GATATC	1 cut(s)	388
EcoT14I	CCWWGG	2 cut(s)	219, 430
EcoT22I	ATGCAT	1 cut(s)	277
ErhI	CCWWGG	2 cut(s)	219, 430
FaeI	CATG	3 cut(s)	98, 217, 279
FaqI	GGGAC	1 cut(s)	478
FatI	CATG	3 cut(s)	94, 213, 275
Fnu4HI	GCNGC	1 cut(s)	173
FokI	GGATG	1 cut(s)	331
Fsp4HI	GCNGC	1 cut(s)	173
FspBI	CTAG	2 cut(s)	186, 431
GlaI	GCGC	3 cut(s)	73, 75, 87
GluI	GCNGC	1 cut(s)	173
GsuI	CTGGAG	1 cut(s)	471
HaeIII	GGCC	4 cut(s)	9, 203, 448, 546
HapII	CCGG	1 cut(s)	456
HgaI	GACGC	1 cut(s)	178
HhaI	GCGC	3 cut(s)	74, 76, 88
Hin1II	CATG	3 cut(s)	98, 217, 279
Hin6I	GCGC	3 cut(s)	72, 74, 86
HinP1I	GCGC	3 cut(s)	72, 74, 86
HinfI	GANTC	1 cut(s)	62
HpaII	CCGG	1 cut(s)	456
Hpy188III	TCNNGA	3 cut(s)	136, 166, 573
Hpy99I	CGWCG	1 cut(s)	172
HpyAV	CCTTC	2 cut(s)	218, 572
HpyCH4IV	ACGT	2 cut(s)	149, 443
HpyCH4V	TGCA	3 cut(s)	26, 275, 279
HpyF10VI	GCNNNNNNNGC	5 cut(s)	28, 200, 289, 304, 527
HpyF3I	CTNAG	1 cut(s)	299
HpySE526I	ACGT	2 cut(s)	149, 443
Hsp92II	CATG	3 cut(s)	98, 217, 279
HspAI	GCGC	3 cut(s)	72, 74, 86
Kzo9I	GATC	2 cut(s)	49, 228
LmnI	GCTCC	1 cut(s)	452
LpnPI	CCDG	8 cut(s)	36, 435, 462, 469, 533, 560, 577, 584
Lsp1109I	GCAGC	1 cut(s)	159
LweI	GCATC	1 cut(s)	361
MaeI	CTAG	2 cut(s)	186, 431
MaeII	ACGT	2 cut(s)	149, 443
MalI	GATC	2 cut(s)	51, 230
MboI	GATC	2 cut(s)	49, 228
MboII	GAAGA	3 cut(s)	118, 280, 341
MflI	RGATCY	1 cut(s)	49
MhlI	GDGCHC	1 cut(s)	105
MluCI	AATT	3 cut(s)	116, 393, 414
MlyI	GAGTC	1 cut(s)	71
MmeI	TCCRAC	1 cut(s)	77
MnlI	CCTC	6 cut(s)	134, 205, 235, 309, 455, 548
Mph1103I	ATGCAT	1 cut(s)	277
MseI	TTAA	4 cut(s)	119, 258, 288, 604
MslI	CAYNNNNRTG	1 cut(s)	442
MspI	CCGG	1 cut(s)	456
MspR9I	CCNGG	3 cut(s)	450, 457, 548
Mva1269I	GAATGC	1 cut(s)	277
MvaI	CCWGG	2 cut(s)	450, 548
MvnI	CGCG	1 cut(s)	74
MwoI	GCNNNNNNNGC	5 cut(s)	28, 200, 289, 304, 527
NciI	CCSGG	1 cut(s)	457
NdeII	GATC	2 cut(s)	49, 228
NlaIII	CATG	3 cut(s)	98, 217, 279
NlaIV	GGNNCC	2 cut(s)	51, 454
NsiI	ATGCAT	1 cut(s)	277
NspI	RCATGY	1 cut(s)	279
PaeI	GCATGC	1 cut(s)	279
PauI	GCGCGC	1 cut(s)	72
PctI	GAATGC	1 cut(s)	277
PkrI	GCNGC	1 cut(s)	174
PleI	GAGTC	1 cut(s)	70
PmaCI	CACGTG	1 cut(s)	150
PmlI	CACGTG	1 cut(s)	150
PpsI	GAGTC	1 cut(s)	70
Ppu21I	YACGTR	2 cut(s)	150, 444
PshBI	ATTAAT	1 cut(s)	119
Psp6I	CCWGG	2 cut(s)	448, 546
PspCI	CACGTG	1 cut(s)	150
PspGI	CCWGG	2 cut(s)	448, 546
PspN4I	GGNNCC	2 cut(s)	51, 454
PspPI	GGNCC	1 cut(s)	544
PsuI	RGATCY	1 cut(s)	49
PteI	GCGCGC	1 cut(s)	72
RsaI	GTAC	1 cut(s)	534
RsaNI	GTAC	1 cut(s)	533
RseI	CAYNNNNRTG	1 cut(s)	442
SaqAI	TTAA	4 cut(s)	119, 258, 288, 604
SatI	GCNGC	1 cut(s)	173
Sau3AI	GATC	2 cut(s)	49, 228
Sau96I	GGNCC	1 cut(s)	544
SchI	GAGTC	1 cut(s)	71
ScrFI	CCNGG	3 cut(s)	450, 457, 548
SduI	GDGCHC	1 cut(s)	105
SetI	ASST	5 cut(s)	152, 187, 300, 446, 564
SfaNI	GCATC	1 cut(s)	361
SmiMI	CAYNNNNRTG	1 cut(s)	442
SmlI	CTYRAG	1 cut(s)	571
SmoI	CTYRAG	1 cut(s)	571
SphI	GCATGC	1 cut(s)	279
Sse9I	AATT	3 cut(s)	116, 393, 414
SsiI	CCGC	3 cut(s)	47, 311, 409
SspMI	CTAG	2 cut(s)	186, 431
StyD4I	CCNGG	3 cut(s)	448, 455, 546
StyI	CCWWGG	2 cut(s)	219, 430
TaiI	ACGT	2 cut(s)	152, 446
TaqI	TCGA	3 cut(s)	105, 135, 423
TasI	AATT	3 cut(s)	116, 393, 414
TatI	WGTACW	1 cut(s)	532
Tru1I	TTAA	4 cut(s)	119, 258, 288, 604
Tru9I	TTAA	4 cut(s)	119, 258, 288, 604
TseI	GCWGC	1 cut(s)	172
TspDTI	ATGAA	2 cut(s)	129, 281
VspI	ATTAAT	1 cut(s)	119
XapI	RAATTY	1 cut(s)	414
XceI	RCATGY	1 cut(s)	279
XcmI	CCANNNNNNNNNTGG	1 cut(s)	217
XmaJI	CCTAGG	1 cut(s)	430
XspI	CTAG	2 cut(s)	186, 431
Zsp2I	ATGCAT	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.