Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009256

Physical Location & Seq

Genomic Coordinates Reverse (-)

3527636 .. 3528490

Gene Structure 855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G050300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGAAGGTGGATGTAGACGGAGAGTAATGGTGGTAGCAGATCCAAACCAAGAGTCAGCAGGTGCCCTACAATATGCACTTTCTAAAGCAATTCGTGAGAACGACGAGTTGATCCTCTTCAATGTCGAAAACCCTAACTCGTGGCGAAACACACTAACGACGTTCCTTAGAAGACCTAGCCGCAGTTCAGGCTCAGCTGCCGCGTCCATAGAAGGCAGCTTAGGGCACGCCGACTTTCTTGAAGAAATGAAGAATGCATGCAAACTTGCAAAACCAAAAGTACGCGTGCGCGTAGAGAAGGTGGCGTTGATAGAAGGCAAAGAGAAAGCAAGCATTATTCTAGATCATAGCAAGGCTCTTGGGGTCGATATCCTAATTATAGGGCAACGACGGAGTCTTTCTACTATAATCTTAGGATACAGGAGGCCCGGAGGGTCCACGCGAGGGACAAAACCAATAGACACAGCAGAGTATTTGATTGATAAAAGCAGCTGCACATGTGTTGGAGTTCAGAAAAAGGGCCAAAATGGAGGCTACCTTCTCAACACAAAGACCCACAAGAACTTCTGGCTTCTGGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

194

Amino Acids

21.17

Weight (kDa)

9.72

Isoelectric Point (pI)

48.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13450 AT4G13450
fragaria_vesca	FvH4_3g38130 FvH4_4g05010
malus_domestica	MD03G1076500.v1.1 MD11G1081000.v1.1 MD13G1223300.v1.1 MD16G1227600.v1.1
prunus_persica	Prupe.1G050300_v2.0.a1 Prupe.6G061400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0395821 RchiOBHm_Chr5g0068561
rosa_multiflora	Rmu_sc0000313.1_g000010 Rmu_sc0003221.1_g000002
rosa_roxburghii	Rroxscaffold_5G00340660
rosa_rugosa	Rorug03G0354000 Rorug05G0390800
rosa_samantha	Rh4DG057200 Rh5AG449100 Rh5BG467200
rosa_wichuraiana	Rw4G005150 Rw5G041930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	50
Acc36I	ACCTGC	1 cut(s)	50
AccB1I	GGYRCC	1 cut(s)	62
AccI	GTMKAC	1 cut(s)	16
AccII	CGCG	4 cut(s)	203, 285, 291, 442
AciI	CCGC	2 cut(s)	181, 201
AclWI	GGATC	2 cut(s)	35, 106
AfaI	GTAC	1 cut(s)	282
AfiI	CCNNNNNNNGG	1 cut(s)	444
AflIII	ACRYGT	2 cut(s)	283, 497
AgsI	TTSAA	2 cut(s)	121, 242
AluBI	AGCT	3 cut(s)	197, 219, 492
AluI	AGCT	3 cut(s)	197, 219, 492
AlwI	GGATC	2 cut(s)	35, 106
AoxI	GGCC	2 cut(s)	425, 520
ApeKI	GCWGC	4 cut(s)	197, 216, 489, 492
ArsI	GACNNNNNNTTYG	2 cut(s)	38, 70
AspLEI	GCGC	1 cut(s)	291
AspS9I	GGNCC	3 cut(s)	426, 435, 520
AsuC2I	CCSGG	1 cut(s)	429
AvaII	GGWCC	1 cut(s)	435
BaeGI	GKGCMC	2 cut(s)	67, 228
BanI	GGYRCC	1 cut(s)	62
BauI	CACGAG	1 cut(s)	139
BbsI	GAAGAC	1 cut(s)	178
BbvI	GCAGC	4 cut(s)	184, 228, 479, 501
BciVI	GTATCC	1 cut(s)	410
BcnI	CCSGG	1 cut(s)	429
BfaI	CTAG	2 cut(s)	177, 341
BfuAI	ACCTGC	1 cut(s)	50
BfuI	GTATCC	1 cut(s)	410
BisI	GCNGC	6 cut(s)	181, 198, 201, 217, 490, 493
BlpI	GCTNAGC	1 cut(s)	193
BlsI	GCNGC	6 cut(s)	182, 199, 202, 218, 491, 494
Bme1390I	CCNGG	1 cut(s)	429
Bme18I	GGWCC	1 cut(s)	435
BmgT120I	GGNCC	3 cut(s)	426, 435, 520
BmiI	GGNNCC	2 cut(s)	64, 436
BmrFI	CCNGG	1 cut(s)	429
BpiI	GAAGAC	1 cut(s)	178
Bpu10I	CCTNAGC	1 cut(s)	220
Bpu1102I	GCTNAGC	1 cut(s)	193
BpuMI	CCSGG	1 cut(s)	429
Bsc4I	CCNNNNNNNGG	1 cut(s)	444
BseGI	GGATG	1 cut(s)	17
BseLI	CCNNNNNNNGG	1 cut(s)	444
BseMII	CTCAG	1 cut(s)	207
BseSI	GKGCMC	2 cut(s)	67, 228
BseXI	GCAGC	4 cut(s)	184, 228, 479, 501
BsgI	GTGCAG	1 cut(s)	478
Bsh1236I	CGCG	4 cut(s)	203, 285, 291, 442
BshFI	GGCC	2 cut(s)	427, 522
BshNI	GGYRCC	1 cut(s)	62
BsiSI	CCGG	1 cut(s)	429
BslFI	GGGAC	1 cut(s)	460
BslI	CCNNNNNNNGG	1 cut(s)	444
BsmFI	GGGAC	1 cut(s)	460
BsmI	GAATGC	1 cut(s)	259
BsnI	GGCC	2 cut(s)	427, 522
Bsp1286I	GDGCHC	2 cut(s)	67, 228
Bsp143I	GATC	3 cut(s)	40, 111, 343
Bsp1720I	GCTNAGC	1 cut(s)	193
BspACI	CCGC	2 cut(s)	181, 201
BspANI	GGCC	2 cut(s)	427, 522
BspCNI	CTCAG	1 cut(s)	206
BspFNI	CGCG	4 cut(s)	203, 285, 291, 442
BspLI	GGNNCC	2 cut(s)	64, 436
BspMI	ACCTGC	1 cut(s)	50
BspPI	GGATC	2 cut(s)	35, 106
BspT107I	GGYRCC	1 cut(s)	62
BssMI	GATC	3 cut(s)	40, 111, 343
BssSI	CACGAG	1 cut(s)	139
Bst2BI	CACGAG	1 cut(s)	139
Bst6I	CTCTTC	1 cut(s)	122
BstC8I	GCNNGC	4 cut(s)	228, 259, 287, 331
BstDEI	CTNAG	4 cut(s)	167, 193, 220, 412
BstF5I	GGATG	1 cut(s)	17
BstFNI	CGCG	4 cut(s)	203, 285, 291, 442
BstHHI	GCGC	1 cut(s)	291
BstKTI	GATC	3 cut(s)	43, 114, 346
BstMBI	GATC	3 cut(s)	40, 111, 343
BstMWI	GCNNNNNNNGC	1 cut(s)	189
BstNSI	RCATGY	2 cut(s)	261, 501
BstSCI	CCNGG	1 cut(s)	427
BstSLI	GKGCMC	2 cut(s)	67, 228
BstUI	CGCG	4 cut(s)	203, 285, 291, 442
BstV1I	GCAGC	4 cut(s)	184, 228, 479, 501
BstV2I	GAAGAC	1 cut(s)	178
BstX2I	RGATCY	1 cut(s)	40
BstYI	RGATCY	1 cut(s)	40
BsuI	GTATCC	1 cut(s)	410
BsuRI	GGCC	2 cut(s)	427, 522
BtsCI	GGATG	1 cut(s)	17
BveI	ACCTGC	1 cut(s)	50
Cac8I	GCNNGC	4 cut(s)	228, 259, 287, 331
CfoI	GCGC	1 cut(s)	291
Cfr13I	GGNCC	3 cut(s)	426, 435, 520
CseI	GACGC	1 cut(s)	192
Csp6I	GTAC	1 cut(s)	281
CviAII	CATG	2 cut(s)	258, 498
CviQI	GTAC	1 cut(s)	281
DdeI	CTNAG	4 cut(s)	167, 193, 220, 412
DpnI	GATC	3 cut(s)	42, 113, 345
DpnII	GATC	3 cut(s)	40, 111, 343
Eam1104I	CTCTTC	1 cut(s)	122
EarI	CTCTTC	1 cut(s)	122
Eco32I	GATATC	1 cut(s)	370
Eco47I	GGWCC	1 cut(s)	435
EcoRV	GATATC	1 cut(s)	370
EcoT22I	ATGCAT	1 cut(s)	259
FaeI	CATG	2 cut(s)	261, 501
FaiI	YATR	7 cut(s)	75, 209, 259, 348, 380, 407, 499
FaqI	GGGAC	1 cut(s)	460
FatI	CATG	2 cut(s)	257, 497
FblI	GTMKAC	1 cut(s)	16
Fnu4HI	GCNGC	6 cut(s)	181, 198, 201, 217, 490, 493
FokI	GGATG	1 cut(s)	24
Fsp4HI	GCNGC	6 cut(s)	181, 198, 201, 217, 490, 493
FspBI	CTAG	2 cut(s)	177, 341
GlaI	GCGC	1 cut(s)	290
GluI	GCNGC	6 cut(s)	181, 198, 201, 217, 490, 493
HaeIII	GGCC	2 cut(s)	427, 522
HapII	CCGG	1 cut(s)	429
HgaI	GACGC	1 cut(s)	192
HhaI	GCGC	1 cut(s)	291
Hin1II	CATG	2 cut(s)	261, 501
Hin6I	GCGC	1 cut(s)	289
HinP1I	GCGC	1 cut(s)	289
HinfI	GANTC	2 cut(s)	53, 394
HpaII	CCGG	1 cut(s)	429
Hpy166II	GTNNAC	2 cut(s)	17, 438
Hpy188I	TCNGA	1 cut(s)	513
Hpy188III	TCNNGA	3 cut(s)	95, 239, 341
Hpy8I	GTNNAC	2 cut(s)	17, 438
Hpy99I	CGWCG	3 cut(s)	107, 163, 393
HpyAV	CCTTC	4 cut(s)	206, 292, 308, 548
HpyCH4IV	ACGT	1 cut(s)	161
HpyCH4V	TGCA	5 cut(s)	77, 257, 261, 269, 495
HpyF10VI	GCNNNNNNNGC	1 cut(s)	189
HpyF3I	CTNAG	4 cut(s)	167, 193, 220, 412
HpySE526I	ACGT	1 cut(s)	161
Hsp92II	CATG	2 cut(s)	261, 501
HspAI	GCGC	1 cut(s)	289
Kzo9I	GATC	3 cut(s)	40, 111, 343
LpnPI	CCDG	6 cut(s)	45, 174, 406, 442, 553, 560
Lsp1109I	GCAGC	4 cut(s)	184, 228, 479, 501
MaeI	CTAG	2 cut(s)	177, 341
MaeII	ACGT	1 cut(s)	161
MalI	GATC	3 cut(s)	42, 113, 345
MboI	GATC	3 cut(s)	40, 111, 343
MboII	GAAGA	4 cut(s)	109, 183, 254, 262
MflI	RGATCY	1 cut(s)	40
MhlI	GDGCHC	2 cut(s)	67, 228
MluCI	AATT	2 cut(s)	90, 375
MluI	ACGCGT	1 cut(s)	283
MlyI	GAGTC	2 cut(s)	62, 403
MmeI	TCCRAC	1 cut(s)	484
MnlI	CCTC	5 cut(s)	125, 417, 425, 437, 524
Mph1103I	ATGCAT	1 cut(s)	259
MspA1I	CMGCKG	2 cut(s)	197, 492
MspI	CCGG	1 cut(s)	429
MspR9I	CCNGG	1 cut(s)	429
Mva1269I	GAATGC	1 cut(s)	259
MvnI	CGCG	4 cut(s)	203, 285, 291, 442
MwoI	GCNNNNNNNGC	1 cut(s)	189
NciI	CCSGG	1 cut(s)	429
NdeII	GATC	3 cut(s)	40, 111, 343
NlaIII	CATG	2 cut(s)	261, 501
NlaIV	GGNNCC	2 cut(s)	64, 436
NsiI	ATGCAT	1 cut(s)	259
NspI	RCATGY	2 cut(s)	261, 501
PaeI	GCATGC	1 cut(s)	261
PaqCI	CACCTGC	1 cut(s)	50
PciI	ACATGT	1 cut(s)	497
PctI	GAATGC	1 cut(s)	259
PflFI	GACNNNGTC	1 cut(s)	393
PkrI	GCNGC	6 cut(s)	182, 199, 202, 218, 491, 494
PleI	GAGTC	2 cut(s)	61, 402
PpsI	GAGTC	2 cut(s)	61, 402
PscI	ACATGT	1 cut(s)	497
PspN4I	GGNNCC	2 cut(s)	64, 436
PspPI	GGNCC	3 cut(s)	426, 435, 520
PsuI	RGATCY	1 cut(s)	40
PsyI	GACNNNGTC	1 cut(s)	393
PvuII	CAGCTG	2 cut(s)	197, 492
RsaI	GTAC	1 cut(s)	282
RsaNI	GTAC	1 cut(s)	281
SatI	GCNGC	6 cut(s)	181, 198, 201, 217, 490, 493
Sau3AI	GATC	3 cut(s)	40, 111, 343
Sau96I	GGNCC	3 cut(s)	426, 435, 520
SchI	GAGTC	2 cut(s)	62, 403
ScrFI	CCNGG	1 cut(s)	429
SduI	GDGCHC	2 cut(s)	67, 228
SetI	ASST	9 cut(s)	10, 64, 164, 178, 199, 221, 303, 494, 540
SinI	GGWCC	1 cut(s)	435
SphI	GCATGC	1 cut(s)	261
Sse9I	AATT	2 cut(s)	90, 375
SsiI	CCGC	2 cut(s)	181, 201
SspMI	CTAG	2 cut(s)	177, 341
StyD4I	CCNGG	1 cut(s)	427
TaiI	ACGT	1 cut(s)	164
TaqI	TCGA	2 cut(s)	126, 366
TasI	AATT	2 cut(s)	90, 375
TauI	GCSGC	2 cut(s)	183, 203
TseI	GCWGC	4 cut(s)	197, 216, 489, 492
TspDTI	ATGAA	1 cut(s)	263
TspGWI	ACGGA	2 cut(s)	34, 406
Tth111I	GACNNNGTC	1 cut(s)	393
VpaK11BI	GGWCC	1 cut(s)	435
XbaI	TCTAGA	1 cut(s)	340
XceI	RCATGY	2 cut(s)	261, 501
XmiI	GTMKAC	1 cut(s)	16
XspI	CTAG	2 cut(s)	177, 341
Zsp2I	ATGCAT	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.