Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0009256

Physical Location & Seq

Genomic Coordinates Forward (+)

32566746 .. 32568213

Gene Structure 1468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g38130.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGCAAGAGCCGGCAAAGACAGTATTGGTGGTGGCGGATCCGAACCGAGAATCATCAAGTGCTCTCCAATACGCACTTTCTCATTCAGTGCTCGATCACGACGAGTTGATCCTCTTTCATGTCGATAATCCTAGTAACTGGATACACGCATTCCATCTCAATACGTTCCTCAAAATCCCGCCGGCTAATGCCGGCGTCCATGCCATGTCGTCGGATCACGGCAGCGGGAGTGGAACTGCTAATTTAGAAAAAGGAACCGCCGTGAAAGATTTTCTCGAAGAAATGAAGAAGGAATGCAATCGGACAAAACCAAAGCTAAATGTGCGCATAGAGAGGGTGGCATTGGAAGCTGCAAGAGACAGAGCCAACACTATTTTGCATCATAGCGAAGTTCTTGGGGTCGACATCGTTGTTATAGGGCAAAAGCGAAGTCTTTTTGCCAAGGGACATTTAGGATCATATACTTGGCCTAGGCCTGGAGGGCGATCATCAGGGTCGTCATCGAAAGGGATAAACACAGCGGAGTATTTGATTGAGAACTGCAAGTGCACTTGTGTTGGAGTACAGAAGAAAGCCCTAGCTGGAGGATACGTTCTCAACTCAAAAACACACAAAAATTTCTGGCTTCTTGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

212

Amino Acids

23.04

Weight (kDa)

9.03

Isoelectric Point (pI)

35.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13450 AT4G13450
fragaria_vesca	FvH4_3g38130 FvH4_4g05010
malus_domestica	MD03G1076500.v1.1 MD11G1081000.v1.1 MD13G1223300.v1.1 MD16G1227600.v1.1
prunus_persica	Prupe.1G050300_v2.0.a1 Prupe.6G061400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0395821 RchiOBHm_Chr5g0068561
rosa_multiflora	Rmu_sc0000313.1_g000010 Rmu_sc0003221.1_g000002
rosa_roxburghii	Rroxscaffold_5G00340660
rosa_rugosa	Rorug03G0354000 Rorug05G0390800
rosa_samantha	Rh4DG057200 Rh5AG449100 Rh5BG467200
rosa_wichuraiana	Rw4G005150 Rw5G041930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	326
AccI	GTMKAC	1 cut(s)	402
AciI	CCGC	5 cut(s)	35, 179, 225, 258, 521
AclWI	GGATC	5 cut(s)	32, 45, 103, 222, 463
AcsI	RAATTY	1 cut(s)	616
AcyI	GRCGYC	1 cut(s)	195
AfaI	GTAC	1 cut(s)	564
AfiI	CCNNNNNNNGG	1 cut(s)	476
AjnI	CCWGG	1 cut(s)	475
AloI	GAACNNNNNNTCC	2 cut(s)	576, 608
AluBI	AGCT	3 cut(s)	316, 350, 581
AluI	AGCT	3 cut(s)	316, 350, 581
Alw21I	GWGCWC	3 cut(s)	64, 93, 551
Alw26I	GTCTC	1 cut(s)	351
Alw44I	GTGCAC	1 cut(s)	547
AlwI	GGATC	5 cut(s)	32, 45, 103, 222, 463
AoxI	GGCC	2 cut(s)	467, 473
ApaLI	GTGCAC	1 cut(s)	547
ApeKI	GCWGC	2 cut(s)	222, 350
ApoI	RAATTY	1 cut(s)	616
ArsI	GACNNNNNNTTYG	2 cut(s)	415, 447
AspA2I	CCTAGG	1 cut(s)	470
AspLEI	GCGC	1 cut(s)	327
AvrII	CCTAGG	1 cut(s)	470
BaeGI	GKGCMC	1 cut(s)	551
BamHI	GGATCC	1 cut(s)	37
Bbv12I	GWGCWC	3 cut(s)	64, 93, 551
BbvI	GCAGC	2 cut(s)	234, 337
BccI	CCATC	1 cut(s)	162
BceAI	ACGGC	2 cut(s)	235, 245
BciT130I	CCWGG	1 cut(s)	477
BciVI	GTATCC	2 cut(s)	135, 581
BcoDI	GTCTC	1 cut(s)	351
BfaI	CTAG	3 cut(s)	132, 471, 578
BfuI	GTATCC	2 cut(s)	135, 581
BglI	GCCNNNNNGGC	1 cut(s)	481
BisI	GCNGC	2 cut(s)	223, 351
BlnI	CCTAGG	1 cut(s)	470
BlsI	GCNGC	2 cut(s)	224, 352
Bme1390I	CCNGG	1 cut(s)	477
BmiI	GGNNCC	2 cut(s)	39, 256
BmrFI	CCNGG	1 cut(s)	477
BmsI	GCATC	1 cut(s)	388
BpmI	CTGGAG	2 cut(s)	498, 603
BsaHI	GRCGYC	1 cut(s)	195
BsaJI	CCNNGG	2 cut(s)	441, 470
BsaXI	ACNNNNNCTCC	2 cut(s)	576, 606
Bsc4I	CCNNNNNNNGG	1 cut(s)	476
Bse118I	RCCGGY	3 cut(s)	10, 181, 191
Bse1I	ACTGG	1 cut(s)	143
BseBI	CCWGG	1 cut(s)	477
BseDI	CCNNGG	2 cut(s)	441, 470
BseLI	CCNNNNNNNGG	1 cut(s)	476
BseNI	ACTGG	1 cut(s)	143
BseSI	GKGCMC	1 cut(s)	551
BseXI	GCAGC	2 cut(s)	234, 337
BshFI	GGCC	2 cut(s)	469, 475
BsiHKAI	GWGCWC	3 cut(s)	64, 93, 551
BsiSI	CCGG	3 cut(s)	11, 182, 192
BslFI	GGGAC	1 cut(s)	459
BslI	CCNNNNNNNGG	1 cut(s)	476
BsmAI	GTCTC	1 cut(s)	351
BsmFI	GGGAC	1 cut(s)	459
BsmI	GAATGC	2 cut(s)	149, 299
BsnI	GGCC	2 cut(s)	469, 475
Bsp1286I	GDGCHC	3 cut(s)	64, 93, 551
Bsp143I	GATC	6 cut(s)	37, 94, 108, 214, 455, 485
BspACI	CCGC	5 cut(s)	35, 179, 225, 258, 521
BspANI	GGCC	2 cut(s)	469, 475
BspLI	GGNNCC	2 cut(s)	39, 256
BspPI	GGATC	5 cut(s)	32, 45, 103, 222, 463
BsrFI	RCCGGY	3 cut(s)	10, 181, 191
BsrI	ACTGG	1 cut(s)	143
BssAI	RCCGGY	3 cut(s)	10, 181, 191
BssECI	CCNNGG	2 cut(s)	441, 470
BssMI	GATC	6 cut(s)	37, 94, 108, 214, 455, 485
BssNI	GRCGYC	1 cut(s)	195
BssT1I	CCWWGG	2 cut(s)	441, 470
Bst2UI	CCWGG	1 cut(s)	477
Bst4CI	ACNGT	1 cut(s)	22
BstACI	GRCGYC	1 cut(s)	195
BstC8I	GCNNGC	3 cut(s)	12, 183, 193
BstHHI	GCGC	1 cut(s)	327
BstKTI	GATC	6 cut(s)	40, 97, 111, 217, 458, 488
BstMAI	GTCTC	1 cut(s)	351
BstMBI	GATC	6 cut(s)	37, 94, 108, 214, 455, 485
BstMWI	GCNNNNNNNGC	3 cut(s)	322, 347, 481
BstNI	CCWGG	1 cut(s)	477
BstSCI	CCNGG	1 cut(s)	475
BstSLI	GKGCMC	1 cut(s)	551
BstV1I	GCAGC	2 cut(s)	234, 337
BstX2I	RGATCY	1 cut(s)	37
BstYI	RGATCY	1 cut(s)	37
BsuI	GTATCC	2 cut(s)	135, 581
BsuRI	GGCC	2 cut(s)	469, 475
BtsIMutI	CAGTG	1 cut(s)	93
Cac8I	GCNNGC	3 cut(s)	12, 183, 193
CfoI	GCGC	1 cut(s)	327
Cfr10I	RCCGGY	3 cut(s)	10, 181, 191
CseI	GACGC	1 cut(s)	184
Csp6I	GTAC	1 cut(s)	563
CviAII	CATG	3 cut(s)	119, 200, 205
CviQI	GTAC	1 cut(s)	563
DpnI	GATC	6 cut(s)	39, 96, 110, 216, 457, 487
DpnII	GATC	6 cut(s)	37, 94, 108, 214, 455, 485
EciI	GGCGGA	1 cut(s)	50
Eco130I	CCWWGG	2 cut(s)	441, 470
Eco147I	AGGCCT	1 cut(s)	475
EcoRII	CCWGG	1 cut(s)	475
EcoT14I	CCWWGG	2 cut(s)	441, 470
ErhI	CCWWGG	2 cut(s)	441, 470
FaeI	CATG	3 cut(s)	122, 203, 208
FaiI	YATR	8 cut(s)	120, 201, 206, 329, 384, 416, 460, 462
FaqI	GGGAC	1 cut(s)	459
FatI	CATG	3 cut(s)	118, 199, 204
FauI	CCCGC	2 cut(s)	186, 218
FblI	GTMKAC	1 cut(s)	402
Fnu4HI	GCNGC	2 cut(s)	223, 351
Fsp4HI	GCNGC	2 cut(s)	223, 351
FspAI	RTGCGCAY	1 cut(s)	326
FspBI	CTAG	3 cut(s)	132, 471, 578
FspI	TGCGCA	1 cut(s)	326
GlaI	GCGC	1 cut(s)	326
GluI	GCNGC	2 cut(s)	223, 351
GsuI	CTGGAG	2 cut(s)	498, 603
HaeIII	GGCC	2 cut(s)	469, 475
HapII	CCGG	3 cut(s)	11, 182, 192
HgaI	GACGC	1 cut(s)	184
HhaI	GCGC	1 cut(s)	327
Hin1I	GRCGYC	1 cut(s)	195
Hin1II	CATG	3 cut(s)	122, 203, 208
Hin6I	GCGC	1 cut(s)	325
HinP1I	GCGC	1 cut(s)	325
HincII	GTYRAC	1 cut(s)	403
HindII	GTYRAC	1 cut(s)	403
HinfI	GANTC	1 cut(s)	50
HpaII	CCGG	3 cut(s)	11, 182, 192
Hpy166II	GTNNAC	2 cut(s)	403, 549
Hpy188I	TCNGA	3 cut(s)	42, 214, 303
Hpy188III	TCNNGA	2 cut(s)	98, 275
Hpy8I	GTNNAC	2 cut(s)	403, 549
Hpy99I	CGWCG	2 cut(s)	104, 214
HpyAV	CCTTC	1 cut(s)	283
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4IV	ACGT	2 cut(s)	164, 591
HpyCH4V	TGCA	6 cut(s)	4, 297, 353, 379, 543, 549
HpyF10VI	GCNNNNNNNGC	3 cut(s)	322, 347, 481
HpySE526I	ACGT	2 cut(s)	164, 591
Hsp92I	GRCGYC	1 cut(s)	195
Hsp92II	CATG	3 cut(s)	122, 203, 208
HspAI	GCGC	1 cut(s)	325
KroI	GCCGGC	3 cut(s)	10, 181, 191
KroNI	GCCGGC	3 cut(s)	12, 183, 193
Kzo9I	GATC	6 cut(s)	37, 94, 108, 214, 455, 485
LpnPI	CCDG	9 cut(s)	24, 124, 195, 205, 462, 477, 489, 567, 607
Lsp1109I	GCAGC	2 cut(s)	234, 337
LweI	GCATC	1 cut(s)	388
MaeI	CTAG	3 cut(s)	132, 471, 578
MaeII	ACGT	2 cut(s)	164, 591
MaeIII	GTNAC	1 cut(s)	134
MalI	GATC	6 cut(s)	39, 96, 110, 216, 457, 487
MboI	GATC	6 cut(s)	37, 94, 108, 214, 455, 485
MboII	GAAGA	3 cut(s)	290, 298, 580
MflI	RGATCY	1 cut(s)	37
MhlI	GDGCHC	3 cut(s)	64, 93, 551
MluCI	AATT	2 cut(s)	241, 616
MmeI	TCCRAC	2 cut(s)	192, 538
MnlI	CCTC	5 cut(s)	122, 179, 327, 473, 578
MroNI	GCCGGC	3 cut(s)	10, 181, 191
MspA1I	CMGCKG	2 cut(s)	225, 521
MspI	CCGG	3 cut(s)	11, 182, 192
MspR9I	CCNGG	1 cut(s)	477
Mva1269I	GAATGC	2 cut(s)	149, 299
MvaI	CCWGG	1 cut(s)	477
MwoI	GCNNNNNNNGC	3 cut(s)	322, 347, 481
NaeI	GCCGGC	3 cut(s)	12, 183, 193
NdeII	GATC	6 cut(s)	37, 94, 108, 214, 455, 485
NgoMIV	GCCGGC	3 cut(s)	10, 181, 191
NlaIII	CATG	3 cut(s)	122, 203, 208
NlaIV	GGNNCC	2 cut(s)	39, 256
NsbI	TGCGCA	1 cut(s)	326
PceI	AGGCCT	1 cut(s)	475
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PctI	GAATGC	2 cut(s)	149, 299
PdiI	GCCGGC	3 cut(s)	12, 183, 193
PfeI	GAWTC	1 cut(s)	50
PkrI	GCNGC	2 cut(s)	224, 352
Psp6I	CCWGG	1 cut(s)	475
PspGI	CCWGG	1 cut(s)	475
PspN4I	GGNNCC	2 cut(s)	39, 256
PsuI	RGATCY	1 cut(s)	37
RsaI	GTAC	1 cut(s)	564
RsaNI	GTAC	1 cut(s)	563
SalI	GTCGAC	1 cut(s)	401
SatI	GCNGC	2 cut(s)	223, 351
Sau3AI	GATC	6 cut(s)	37, 94, 108, 214, 455, 485
ScrFI	CCNGG	1 cut(s)	477
SduI	GDGCHC	3 cut(s)	64, 93, 551
SetI	ASST	5 cut(s)	167, 318, 352, 583, 594
SfaNI	GCATC	1 cut(s)	388
Sse9I	AATT	2 cut(s)	241, 616
SseBI	AGGCCT	1 cut(s)	475
SsiI	CCGC	5 cut(s)	35, 179, 225, 258, 521
SspMI	CTAG	3 cut(s)	132, 471, 578
StuI	AGGCCT	1 cut(s)	475
StyD4I	CCNGG	1 cut(s)	475
StyI	CCWWGG	2 cut(s)	441, 470
TaaI	ACNGT	1 cut(s)	22
TaiI	ACGT	2 cut(s)	167, 594
TaqI	TCGA	5 cut(s)	93, 123, 276, 402, 503
TasI	AATT	2 cut(s)	241, 616
TatI	WGTACW	1 cut(s)	562
TfiI	GAWTC	1 cut(s)	50
TscAI	CASTG	1 cut(s)	93
TseI	GCWGC	2 cut(s)	222, 350
TspDTI	ATGAA	2 cut(s)	107, 299
TspRI	CASTG	1 cut(s)	93
VneI	GTGCAC	1 cut(s)	547
XapI	RAATTY	1 cut(s)	616
XmaJI	CCTAGG	1 cut(s)	470
XmiI	GTMKAC	1 cut(s)	402
XspI	CTAG	3 cut(s)	132, 471, 578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.