Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009256

Physical Location & Seq

Genomic Coordinates Forward (+)

74522247 .. 74523408

Gene Structure 1162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34400

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGCAAGCGCCGGCAAAAAAAGTATTGGTGGTGGCAGATCCGACCCGAGATTCATCGGGTGCGCTCCAATACGCACTTTCTCATTCAGTGCTCGAACACGACGAATTGATCCTCCTTCATGTCGAGAACCCAAGTAATTGGATACACGGATTCAATCTCAATACATTGCTCAAAATCCCGCCTAATCTAGCTACCGTCGCCGCGCAAGCCATGTCGTTTGATCACGGGAAAGGAAATGGAATTGCAAACTCAGGGGAGCCGGTAAAGGATTTTCTTGAAGAAATGAAGAATGAATGCAATCGGGCAAAACCAAAACTAAATGTGCGTATAGAGAGGGTGACATTGGAAGCTGGCAGAGACAGAGCAAACACTATTTTACATCATAGCGAAGTTCTTGGGGTTGACATCATTGTTATAGGGCAACGGCGAAGTCTTTTTCCCAAGGGACATTTAGGAGCATATACATGGCCTGGAGGGCGATCGACAGGGTCATCGAAAGGGATAAACACAGCAGAGTATTTGATTGAGAACTGCAAGTGCACTTGTGTTGGAGTACAGAAGAAGAGCCAAGCTGGAGGCTACGTTCTCAACTCAAAAACCCACAAAAATTTCTGGCTTCTTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

208

Amino Acids

22.73

Weight (kDa)

9.05

Isoelectric Point (pI)

31.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13450 AT4G13450
fragaria_vesca	FvH4_3g38130 FvH4_4g05010
malus_domestica	MD03G1076500.v1.1 MD11G1081000.v1.1 MD13G1223300.v1.1 MD16G1227600.v1.1
prunus_persica	Prupe.1G050300_v2.0.a1 Prupe.6G061400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0395821 RchiOBHm_Chr5g0068561
rosa_multiflora	Rmu_sc0000313.1_g000010 Rmu_sc0003221.1_g000002
rosa_roxburghii	Rroxscaffold_5G00340660
rosa_rugosa	Rorug03G0354000 Rorug05G0390800
rosa_samantha	Rh4DG057200 Rh5AG449100 Rh5BG467200
rosa_wichuraiana	Rw4G005150 Rw5G041930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	203
AciI	CCGC	2 cut(s)	179, 201
AclWI	GGATC	2 cut(s)	32, 103
AcsI	RAATTY	1 cut(s)	607
AfaI	GTAC	1 cut(s)	555
AgsI	TTSAA	2 cut(s)	154, 278
AjnI	CCWGG	1 cut(s)	469
AloI	GAACNNNNNNTCC	2 cut(s)	567, 599
AluBI	AGCT	3 cut(s)	191, 350, 572
AluI	AGCT	3 cut(s)	191, 350, 572
Alw21I	GWGCWC	2 cut(s)	93, 542
Alw26I	GTCTC	1 cut(s)	351
Alw44I	GTGCAC	1 cut(s)	538
AlwI	GGATC	2 cut(s)	32, 103
Ama87I	CYCGRG	1 cut(s)	45
AoxI	GGCC	1 cut(s)	467
ApaLI	GTGCAC	1 cut(s)	538
ApoI	RAATTY	1 cut(s)	607
AspLEI	GCGC	3 cut(s)	10, 64, 205
AsuHPI	GGTGA	1 cut(s)	349
AvaI	CYCGRG	1 cut(s)	45
BaeGI	GKGCMC	1 cut(s)	542
Bbv12I	GWGCWC	2 cut(s)	93, 542
BceAI	ACGGC	1 cut(s)	440
BciT130I	CCWGG	1 cut(s)	471
BciVI	GTATCC	1 cut(s)	135
BclI	TGATCA	1 cut(s)	220
BcoDI	GTCTC	1 cut(s)	351
BfaI	CTAG	1 cut(s)	188
BfoI	RGCGCY	1 cut(s)	11
BfuI	GTATCC	1 cut(s)	135
BglI	GCCNNNNNGGC	1 cut(s)	475
BisI	GCNGC	1 cut(s)	201
BlsI	GCNGC	1 cut(s)	202
Bme1390I	CCNGG	1 cut(s)	471
BmeT110I	CYCGRG	1 cut(s)	45
BmiI	GGNNCC	1 cut(s)	258
BmrFI	CCNGG	1 cut(s)	471
BpmI	CTGGAG	2 cut(s)	492, 594
BsaJI	CCNNGG	1 cut(s)	441
BsaXI	ACNNNNNCTCC	2 cut(s)	567, 597
Bse118I	RCCGGY	2 cut(s)	10, 259
Bse3DI	GCAATG	1 cut(s)	164
BseBI	CCWGG	1 cut(s)	471
BseDI	CCNNGG	1 cut(s)	441
BseMI	GCAATG	1 cut(s)	164
BseMII	CTCAG	1 cut(s)	264
BseSI	GKGCMC	1 cut(s)	542
Bsh1236I	CGCG	1 cut(s)	203
Bsh1285I	CGRYCG	1 cut(s)	482
BshFI	GGCC	1 cut(s)	469
BsiEI	CGRYCG	1 cut(s)	482
BsiHKAI	GWGCWC	2 cut(s)	93, 542
BsiHKCI	CYCGRG	1 cut(s)	45
BsiSI	CCGG	2 cut(s)	11, 260
BslFI	GGGAC	1 cut(s)	459
BsmAI	GTCTC	1 cut(s)	351
BsmFI	GGGAC	1 cut(s)	459
BsmI	GAATGC	1 cut(s)	299
BsnI	GGCC	1 cut(s)	469
BsoBI	CYCGRG	1 cut(s)	45
Bsp1286I	GDGCHC	2 cut(s)	93, 542
Bsp143I	GATC	4 cut(s)	37, 108, 220, 479
BspACI	CCGC	2 cut(s)	179, 201
BspANI	GGCC	1 cut(s)	469
BspCNI	CTCAG	1 cut(s)	263
BspFNI	CGCG	1 cut(s)	203
BspLI	GGNNCC	1 cut(s)	258
BspPI	GGATC	2 cut(s)	32, 103
BspQI	GCTCTTC	1 cut(s)	557
BsrDI	GCAATG	1 cut(s)	164
BsrFI	RCCGGY	2 cut(s)	10, 259
BssAI	RCCGGY	2 cut(s)	10, 259
BssECI	CCNNGG	1 cut(s)	441
BssMI	GATC	4 cut(s)	37, 108, 220, 479
BssT1I	CCWWGG	1 cut(s)	441
Bst2UI	CCWGG	1 cut(s)	471
Bst4CI	ACNGT	1 cut(s)	196
Bst6I	CTCTTC	1 cut(s)	557
BstC8I	GCNNGC	4 cut(s)	6, 12, 207, 352
BstDEI	CTNAG	1 cut(s)	250
BstFNI	CGCG	1 cut(s)	203
BstH2I	RGCGCY	1 cut(s)	11
BstHHI	GCGC	3 cut(s)	10, 64, 205
BstKTI	GATC	4 cut(s)	40, 111, 223, 482
BstMAI	GTCTC	1 cut(s)	351
BstMBI	GATC	4 cut(s)	37, 108, 220, 479
BstMCI	CGRYCG	1 cut(s)	482
BstMWI	GCNNNNNNNGC	3 cut(s)	197, 206, 475
BstNI	CCWGG	1 cut(s)	471
BstSCI	CCNGG	1 cut(s)	469
BstSLI	GKGCMC	1 cut(s)	542
BstUI	CGCG	1 cut(s)	203
BstX2I	RGATCY	1 cut(s)	37
BstXI	CCANNNNNNTGG	1 cut(s)	138
BstYI	RGATCY	1 cut(s)	37
BsuI	GTATCC	1 cut(s)	135
BsuRI	GGCC	1 cut(s)	469
BtsIMutI	CAGTG	1 cut(s)	93
Cac8I	GCNNGC	4 cut(s)	6, 12, 207, 352
CfoI	GCGC	3 cut(s)	10, 64, 205
Cfr10I	RCCGGY	2 cut(s)	10, 259
Csp6I	GTAC	1 cut(s)	554
CviAII	CATG	3 cut(s)	119, 211, 465
CviJI	RGCY	9 cut(s)	191, 209, 259, 350, 469, 567, 572, 579, 616
CviKI_1	RGCY	9 cut(s)	191, 209, 259, 350, 469, 567, 572, 579, 616
CviQI	GTAC	1 cut(s)	554
DdeI	CTNAG	1 cut(s)	250
DpnI	GATC	4 cut(s)	39, 110, 222, 481
DpnII	GATC	4 cut(s)	37, 108, 220, 479
Eam1104I	CTCTTC	1 cut(s)	557
EarI	CTCTTC	1 cut(s)	557
Eco130I	CCWWGG	1 cut(s)	441
Eco88I	CYCGRG	1 cut(s)	45
EcoRII	CCWGG	1 cut(s)	469
EcoT14I	CCWWGG	1 cut(s)	441
ErhI	CCWWGG	1 cut(s)	441
FaeI	CATG	3 cut(s)	122, 214, 468
FaiI	YATR	9 cut(s)	120, 212, 329, 384, 416, 460, 462, 466, 625
FaqI	GGGAC	1 cut(s)	459
FatI	CATG	3 cut(s)	118, 210, 464
FauI	CCCGC	1 cut(s)	186
FbaI	TGATCA	1 cut(s)	220
Fnu4HI	GCNGC	1 cut(s)	201
Fsp4HI	GCNGC	1 cut(s)	201
FspBI	CTAG	1 cut(s)	188
GlaI	GCGC	3 cut(s)	9, 63, 204
GluI	GCNGC	1 cut(s)	201
GsuI	CTGGAG	2 cut(s)	492, 594
HaeII	RGCGCY	1 cut(s)	11
HaeIII	GGCC	1 cut(s)	469
HapII	CCGG	2 cut(s)	11, 260
HhaI	GCGC	3 cut(s)	10, 64, 205
Hin1II	CATG	3 cut(s)	122, 214, 468
Hin6I	GCGC	3 cut(s)	8, 62, 203
HinP1I	GCGC	3 cut(s)	8, 62, 203
HincII	GTYRAC	1 cut(s)	403
HindII	GTYRAC	1 cut(s)	403
HinfI	GANTC	2 cut(s)	50, 150
HpaII	CCGG	2 cut(s)	11, 260
HphI	GGTGA	1 cut(s)	349
Hpy166II	GTNNAC	2 cut(s)	403, 540
Hpy188I	TCNGA	1 cut(s)	42
Hpy188III	TCNNGA	2 cut(s)	124, 275
Hpy8I	GTNNAC	2 cut(s)	403, 540
Hpy99I	CGWCG	2 cut(s)	104, 200
HpyAV	CCTTC	1 cut(s)	125
HpyCH4III	ACNGT	1 cut(s)	196
HpyCH4IV	ACGT	1 cut(s)	582
HpyCH4V	TGCA	6 cut(s)	4, 245, 297, 534, 540, 623
HpyF10VI	GCNNNNNNNGC	3 cut(s)	197, 206, 475
HpyF3I	CTNAG	1 cut(s)	250
HpySE526I	ACGT	1 cut(s)	582
Hsp92II	CATG	3 cut(s)	122, 214, 468
HspAI	GCGC	3 cut(s)	8, 62, 203
KroI	GCCGGC	1 cut(s)	10
KroNI	GCCGGC	1 cut(s)	12
Ksp22I	TGATCA	1 cut(s)	220
Kzo9I	GATC	4 cut(s)	37, 108, 220, 479
LguI	GCTCTTC	1 cut(s)	557
LmnI	GCTCC	3 cut(s)	69, 256, 455
LpnPI	CCDG	9 cut(s)	24, 237, 273, 336, 456, 471, 483, 558, 598
MaeI	CTAG	1 cut(s)	188
MaeII	ACGT	1 cut(s)	582
MaeIII	GTNAC	1 cut(s)	337
MalI	GATC	4 cut(s)	39, 110, 222, 481
MboI	GATC	4 cut(s)	37, 108, 220, 479
MboII	GAAGA	4 cut(s)	290, 298, 571, 574
MflI	RGATCY	1 cut(s)	37
MhlI	GDGCHC	2 cut(s)	93, 542
MluCI	AATT	4 cut(s)	104, 136, 240, 607
MmeI	TCCRAC	2 cut(s)	65, 529
MnlI	CCTC	4 cut(s)	122, 327, 467, 569
MroNI	GCCGGC	1 cut(s)	10
MslI	CAYNNNNRTG	1 cut(s)	463
MspI	CCGG	2 cut(s)	11, 260
MspR9I	CCNGG	1 cut(s)	471
Mva1269I	GAATGC	1 cut(s)	299
MvaI	CCWGG	1 cut(s)	471
MvnI	CGCG	1 cut(s)	203
MwoI	GCNNNNNNNGC	3 cut(s)	197, 206, 475
NaeI	GCCGGC	1 cut(s)	12
NdeII	GATC	4 cut(s)	37, 108, 220, 479
NgoMIV	GCCGGC	1 cut(s)	10
NlaIII	CATG	3 cut(s)	122, 214, 468
NlaIV	GGNNCC	1 cut(s)	258
NmuCI	GTSAC	1 cut(s)	337
PciSI	GCTCTTC	1 cut(s)	557
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PctI	GAATGC	1 cut(s)	299
PdiI	GCCGGC	1 cut(s)	12
PfeI	GAWTC	2 cut(s)	50, 150
PflFI	GACNNNGTC	1 cut(s)	487
PkrI	GCNGC	1 cut(s)	202
Ple19I	CGATCG	1 cut(s)	482
Psp6I	CCWGG	1 cut(s)	469
PspGI	CCWGG	1 cut(s)	469
PspN4I	GGNNCC	1 cut(s)	258
PsuI	RGATCY	1 cut(s)	37
PsyI	GACNNNGTC	1 cut(s)	487
PvuI	CGATCG	1 cut(s)	482
RsaI	GTAC	1 cut(s)	555
RsaNI	GTAC	1 cut(s)	554
RseI	CAYNNNNRTG	1 cut(s)	463
SapI	GCTCTTC	1 cut(s)	557
SatI	GCNGC	1 cut(s)	201
Sau3AI	GATC	4 cut(s)	37, 108, 220, 479
ScrFI	CCNGG	1 cut(s)	471
SduI	GDGCHC	2 cut(s)	93, 542
SetI	ASST	4 cut(s)	193, 352, 574, 585
SmiMI	CAYNNNNRTG	1 cut(s)	463
Sse9I	AATT	4 cut(s)	104, 136, 240, 607
SsiI	CCGC	2 cut(s)	179, 201
SspMI	CTAG	1 cut(s)	188
StyD4I	CCNGG	1 cut(s)	469
StyI	CCWWGG	1 cut(s)	441
TaaI	ACNGT	1 cut(s)	196
TaiI	ACGT	1 cut(s)	585
TaqI	TCGA	4 cut(s)	93, 123, 482, 494
TasI	AATT	4 cut(s)	104, 136, 240, 607
TatI	WGTACW	1 cut(s)	553
TauI	GCSGC	1 cut(s)	203
TfiI	GAWTC	2 cut(s)	50, 150
TscAI	CASTG	1 cut(s)	93
TseFI	GTSAC	1 cut(s)	337
Tsp45I	GTSAC	1 cut(s)	337
TspDTI	ATGAA	4 cut(s)	42, 107, 299, 306
TspGWI	ACGGA	1 cut(s)	162
TspRI	CASTG	1 cut(s)	93
Tth111I	GACNNNGTC	1 cut(s)	487
VneI	GTGCAC	1 cut(s)	538
XapI	RAATTY	1 cut(s)	607
XspI	CTAG	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.